Tomato yellow leaf curl Sardinia virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000844945.1 |
| Release date | 2015/2/12 |
| Submitter | Noris,E., Vaira,A.M., Caciagli,P., Masenga,V., Gronenborn,B., Accotto,G.P., Laufs,J., Schumacher,S., Geisler,N., Jupin,I., Desbiez,C., David,C., Mettouchi,A., Traut,W., Heyraud,F., Matzeit,V., Rogers,S.G., Schell,J., Kheyr-Pour,A., Bendahmane,M., Crespi,S. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_003828
TAATATTACCGGATGGCCGCGCTCCCCGATAAAGAAGTGGGTCCTACGCAGTAGTTTCTGTCGACCAATGAAATTGCAGCCTCAAAGCTTAAATAACTGTTCAGCTGTGTTATAAACTTGCTCCCTAAGTTTAAAAAATATACAAAATGTGGGATCCATTATTAAATGAATTTCCTGATTCAGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACTTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTGCAGTCGTACGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATCAAGTCAATTTATATATTAGGAAAGATTTGGATGGATGAAAACATAAAAAAACAAAATCATACTAACCAAGTGATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTACGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCACCAAGAGCAGGCGAAGTATGAAAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACGTTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAATAAAAATTAAATTTTATTTCATGATTTTCAGTTACATCAATTGTTCTTTCAAATACATGAAACAATACATAATCAACTGCTCTAACAACATTATTTAAAGAAATTACACCCAAATTATTCAAATATTTACAGACTTGATATTTAAAGACTCTTAAAAAATGACCAGTCGGAGACTGTAAGGTCGTCCAGATGTGGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAAGTTGTGGTTGAATCTGATTTGGAATGTTAGTGTGTTGTATTTGTTGTTGAATGGGTTCTGATTGTGTCTGGTTATCGTGAAATATAGGGGATTTGTTATCCCGAAGGTATAAACGCCACTCGTTGCTTGATGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTATGCAGTCTAAGTGTATGTAATAAGAGCAGCCACAGTCCAGATCTACCCTTCTACGCCTCACTTGCCTCTTCTTGGCGATGTGATGTTGTATTTTGATTGGTATCTGCGAACAATGGCTGGTGGATGGTGACGAAGATTGCATTCTTAGTAGCCCAGTTTTTTAATGCTTGATTTTTTTCTTCGTCGAGATATTCTTTAAATGATGATTGTGGGCCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTTTTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCACGTTGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTATACTCACCGGTCTCCAAGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCAGTGTTCAAGTTCATCAGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAACATAAGGTGCCGGAGGCACCTGGAAAACCTTATCTAAATTACTATTTATATTATGAAAATGTAGAACGTAATCTCTAGGCGCTAATTCTTTAATTACATCAAGAGCCTGCGACTTACTTCCTGCGTTAATTGCCTTTGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCCCTAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAACATCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTGGTACAATTGTATTTTCCTTCGAATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTAGTTCTCTGCAAATTTTGATGAATAATTTGTTTGTGGGTGTTTGTAGGTTTGTTATTTGGGAAAGTGCATTTTCTTTTGTTAAATCACATTTGGGATATGTAAGGAAATAATTTTTAGCCTTGATACTAAAACGACCTGATCTTGGCATTTTTGCTGTCGTTCTGAATCGGGGGACACTCAAAGTATCCAGCAATTGGGGGAATTGGGGGGCAATATATATGATGCCCCCTAAATGGCATAGATGTAATTATTCAAAGTAATAAATTTATTTTTTAATTTTTTTTTGGTAAAGCGGCCATCCGTA
Gene Information
| NCBI Accession | NP_620737.1 |
|---|---|
| Location | 147-494 |
| Gene Name | V2 |
| Protein Name | V2 protein |
| Coding Region | ATGTGGGATCCATTATTAAATGAATTTCCTGATTCAGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACTTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGA |
| Protein Sequence | MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVSKAADVQNVQKP |
| NCBI Accession | NP_620738.1 |
|---|---|
| Location | 307-1080 |
| Gene Name | V1 |
| Protein Name | capsid protein |
| Coding Region | ATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTGCAGTCGTACGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATCAAGTCAATTTATATATTAGGAAAGATTTGGATGGATGAAAACATAAAAAAACAAAATCATACTAACCAAGTGATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTACGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCACCAAGAGCAGGCGAAGTATGAAAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACGTTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAA |
| Protein Sequence | MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWTYRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN |
| NCBI Accession | NP_620739.1 |
|---|---|
| Location | 1077-1481 |
| Gene Name | C3 |
| Protein Name | C3 protein |
| Coding Region | ATGGATTTACGCACAGGGGAGTACATCACTGCGCATCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCACGATAACCAGACACAATCAGAACCCATTCAACAACAAATACAACACACTAACATTCCAAATCAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCACATCTGGACGACCTTACAGTCTCCGACTGGTCATTTTTTAAGAGTCTTTAAATATCAAGTCTGTAAATATTTGAATAATTTGGGTGTAATTTCTTTAAATAATGTTGTTAGAGCAGTTGATTATGTATTGTTTCATGTATTTGAAAGAACAATTGATGTAACTGAAAATCATGAAATAAAATTTAATTTTTATTAA |
| Protein Sequence | MDLRTGEYITAHQATSGVYTFGITNPLYFTITRHNQNPFNNKYNTLTFQIRFNHNLRKELGIHKCFLNFHIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNNVVRAVDYVLFHVFERTIDVTENHEIKFNFY |
| NCBI Accession | NP_620740.1 |
|---|---|
| Location | 1222-1629 |
| Gene Name | C2 |
| Protein Name | C2 protein |
| Coding Region | ATGCAATCTTCGTCACCATCCACCAGCCATTGTTCGCAGATACCAATCAAAATACAACATCACATCGCCAAGAAGAGGCAAGTGAGGCGTAGAAGGGTAGATCTGGACTGTGGCTGCTCTTATTACATACACTTAGACTGCATAAATCATGGATTTACGCACAGGGGAGTACATCACTGCGCATCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCACGATAACCAGACACAATCAGAACCCATTCAACAACAAATACAACACACTAACATTCCAAATCAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCACATCTGGACGACCTTACAGTCTCCGACTGGTCATTTTTTAAGAGTCTTTAA |
| Protein Sequence | MQSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHLDCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQSEPIQQQIQHTNIPNQIQPQLEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL |
| NCBI Accession | NP_620741.1 |
|---|---|
| Location | 1538-2617 |
| Gene Name | C1 |
| Protein Name | Rep protein |
| Coding Region | ATGCCAAGATCAGGTCGTTTTAGTATCAAGGCTAAAAATTATTTCCTTACATATCCCAAATGTGATTTAACAAAAGAAAATGCACTTTCCCAAATAACAAACCTACAAACACCCACAAACAAATTATTCATCAAAATTTGCAGAGAACTACATGAAAATGGGGAACCTCATCTCCATATTCTCATCCAATTCGAAGGAAAATACAATTGTACCAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGATGTTCTTGAATGGGGTACTTTCCAGATCGACGGACGATCTGCTAGGGGAGGACAACAGACAGCCAACGACGCTTACGCAAAGGCAATTAACGCAGGAAGTAAGTCGCAGGCTCTTGATGTAATTAAAGAATTAGCGCCTAGAGATTACGTTCTACATTTTCATAATATAAATAGTAATTTAGATAAGGTTTTCCAGGTGCCTCCGGCACCTTATGTTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCTGATGAACTTGAACACTGGGTTTCCGAGAACGTCATGGATGCCGCTGCGCGGCCTTGGAGACCGGTGAGTATAGTGATTGAGGGTGACAGCCGGACAGGAAAGACAACGTGGGCCCGTTCATTAGGCCCACATAATTATTTGTGCGGCCATCTTGACCTCAGTCAAAAAGTATACAGCAATAATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATTTAAAACACTTTAAAGAATTTATGGGGGCCCAAAGAGATTGGCAAAGCAACACAAAGTATGGCAAGCCCATTCAAATTAAAGGAGGCATTCCCACTATCTTCCTATGCAATCCAGGCCCACAATCATCATTTAAAGAATATCTCGACGAAGAAAAAAATCAAGCATTAAAAAACTGGGCTACTAAGAATGCAATCTTCGTCACCATCCACCAGCCATTGTTCGCAGATACCAATCAAAATACAACATCACATCGCCAAGAAGAGGCAAGTGAGGCGTAG |
| Protein Sequence | MPRSGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSQALDVIKELAPRDYVLHFHNINSNLDKVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWRPVSIVIEGDSRTGKTTWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQALKNWATKNAIFVTIHQPLFADTNQNTTSHRQEEASEA |
| NCBI Accession | NP_620742.1 |
|---|---|
| Location | 2170-2466 |
| Gene Name | C4 |
| Protein Name | C4 protein |
| Coding Region | ATGAAAATGGGGAACCTCATCTCCATATTCTCATCCAATTCGAAGGAAAATACAATTGTACCAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGATGTTCTTGAATGGGGTACTTTCCAGATCGACGGACGATCTGCTAGGGGAGGACAACAGACAGCCAACGACGCTTACGCAAAGGCAATTAACGCAGGAAGTAAGTCGCAGGCTCTTGATGTAA |
| Protein Sequence | MKMGNLISIFSSNSKENTIVPINDSSTWYPQPGQHISIRTFRELNRAPTSSPISTRTEMFLNGVLSRSTDDLLGEDNRQPTTLTQRQLTQEVSRRLLM |