Tomato yellow leaf curl Sardinia virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000844945.1
Release date 2015/2/12
Submitter Noris,E., Vaira,A.M., Caciagli,P., Masenga,V., Gronenborn,B., Accotto,G.P., Laufs,J., Schumacher,S., Geisler,N., Jupin,I., Desbiez,C., David,C., Mettouchi,A., Traut,W., Heyraud,F., Matzeit,V., Rogers,S.G., Schell,J., Kheyr-Pour,A., Bendahmane,M., Crespi,S.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003828
TAATATTACCGGATGGCCGCGCTCCCCGATAAAGAAGTGGGTCCTACGCAGTAGTTTCTGTCGACCAATGAAATTGCAGCCTCAAAGCTTAAATAACTGTTCAGCTGTGTTATAAACTTGCTCCCTAAGTTTAAAAAATATACAAAATGTGGGATCCATTATTAAATGAATTTCCTGATTCAGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACTTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTGCAGTCGTACGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATCAAGTCAATTTATATATTAGGAAAGATTTGGATGGATGAAAACATAAAAAAACAAAATCATACTAACCAAGTGATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTACGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCACCAAGAGCAGGCGAAGTATGAAAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACGTTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAATAAAAATTAAATTTTATTTCATGATTTTCAGTTACATCAATTGTTCTTTCAAATACATGAAACAATACATAATCAACTGCTCTAACAACATTATTTAAAGAAATTACACCCAAATTATTCAAATATTTACAGACTTGATATTTAAAGACTCTTAAAAAATGACCAGTCGGAGACTGTAAGGTCGTCCAGATGTGGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAAGTTGTGGTTGAATCTGATTTGGAATGTTAGTGTGTTGTATTTGTTGTTGAATGGGTTCTGATTGTGTCTGGTTATCGTGAAATATAGGGGATTTGTTATCCCGAAGGTATAAACGCCACTCGTTGCTTGATGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTATGCAGTCTAAGTGTATGTAATAAGAGCAGCCACAGTCCAGATCTACCCTTCTACGCCTCACTTGCCTCTTCTTGGCGATGTGATGTTGTATTTTGATTGGTATCTGCGAACAATGGCTGGTGGATGGTGACGAAGATTGCATTCTTAGTAGCCCAGTTTTTTAATGCTTGATTTTTTTCTTCGTCGAGATATTCTTTAAATGATGATTGTGGGCCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTTTTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCACGTTGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTATACTCACCGGTCTCCAAGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCAGTGTTCAAGTTCATCAGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAACATAAGGTGCCGGAGGCACCTGGAAAACCTTATCTAAATTACTATTTATATTATGAAAATGTAGAACGTAATCTCTAGGCGCTAATTCTTTAATTACATCAAGAGCCTGCGACTTACTTCCTGCGTTAATTGCCTTTGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCCCTAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAACATCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTGGTACAATTGTATTTTCCTTCGAATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTAGTTCTCTGCAAATTTTGATGAATAATTTGTTTGTGGGTGTTTGTAGGTTTGTTATTTGGGAAAGTGCATTTTCTTTTGTTAAATCACATTTGGGATATGTAAGGAAATAATTTTTAGCCTTGATACTAAAACGACCTGATCTTGGCATTTTTGCTGTCGTTCTGAATCGGGGGACACTCAAAGTATCCAGCAATTGGGGGAATTGGGGGGCAATATATATGATGCCCCCTAAATGGCATAGATGTAATTATTCAAAGTAATAAATTTATTTTTTAATTTTTTTTTGGTAAAGCGGCCATCCGTA

Gene Information

NCBI Accession NP_620737.1
Location 147-494
Gene Name V2
Protein Name V2 protein
Coding Region ATGTGGGATCCATTATTAAATGAATTTCCTGATTCAGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACTTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVSKAADVQNVQKP

NCBI Accession NP_620738.1
Location 307-1080
Gene Name V1
Protein Name capsid protein
Coding Region ATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTGCAGTCGTACGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATCAAGTCAATTTATATATTAGGAAAGATTTGGATGGATGAAAACATAAAAAAACAAAATCATACTAACCAAGTGATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTACGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCACCAAGAGCAGGCGAAGTATGAAAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACGTTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAA
Protein Sequence MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWTYRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession NP_620739.1
Location 1077-1481
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAGTACATCACTGCGCATCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCACGATAACCAGACACAATCAGAACCCATTCAACAACAAATACAACACACTAACATTCCAAATCAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCACATCTGGACGACCTTACAGTCTCCGACTGGTCATTTTTTAAGAGTCTTTAAATATCAAGTCTGTAAATATTTGAATAATTTGGGTGTAATTTCTTTAAATAATGTTGTTAGAGCAGTTGATTATGTATTGTTTCATGTATTTGAAAGAACAATTGATGTAACTGAAAATCATGAAATAAAATTTAATTTTTATTAA
Protein Sequence MDLRTGEYITAHQATSGVYTFGITNPLYFTITRHNQNPFNNKYNTLTFQIRFNHNLRKELGIHKCFLNFHIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNNVVRAVDYVLFHVFERTIDVTENHEIKFNFY

NCBI Accession NP_620740.1
Location 1222-1629
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAATCTTCGTCACCATCCACCAGCCATTGTTCGCAGATACCAATCAAAATACAACATCACATCGCCAAGAAGAGGCAAGTGAGGCGTAGAAGGGTAGATCTGGACTGTGGCTGCTCTTATTACATACACTTAGACTGCATAAATCATGGATTTACGCACAGGGGAGTACATCACTGCGCATCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCACGATAACCAGACACAATCAGAACCCATTCAACAACAAATACAACACACTAACATTCCAAATCAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCACATCTGGACGACCTTACAGTCTCCGACTGGTCATTTTTTAAGAGTCTTTAA
Protein Sequence MQSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHLDCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQSEPIQQQIQHTNIPNQIQPQLEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL

NCBI Accession NP_620741.1
Location 1538-2617
Gene Name C1
Protein Name Rep protein
Coding Region ATGCCAAGATCAGGTCGTTTTAGTATCAAGGCTAAAAATTATTTCCTTACATATCCCAAATGTGATTTAACAAAAGAAAATGCACTTTCCCAAATAACAAACCTACAAACACCCACAAACAAATTATTCATCAAAATTTGCAGAGAACTACATGAAAATGGGGAACCTCATCTCCATATTCTCATCCAATTCGAAGGAAAATACAATTGTACCAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGATGTTCTTGAATGGGGTACTTTCCAGATCGACGGACGATCTGCTAGGGGAGGACAACAGACAGCCAACGACGCTTACGCAAAGGCAATTAACGCAGGAAGTAAGTCGCAGGCTCTTGATGTAATTAAAGAATTAGCGCCTAGAGATTACGTTCTACATTTTCATAATATAAATAGTAATTTAGATAAGGTTTTCCAGGTGCCTCCGGCACCTTATGTTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCTGATGAACTTGAACACTGGGTTTCCGAGAACGTCATGGATGCCGCTGCGCGGCCTTGGAGACCGGTGAGTATAGTGATTGAGGGTGACAGCCGGACAGGAAAGACAACGTGGGCCCGTTCATTAGGCCCACATAATTATTTGTGCGGCCATCTTGACCTCAGTCAAAAAGTATACAGCAATAATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATTTAAAACACTTTAAAGAATTTATGGGGGCCCAAAGAGATTGGCAAAGCAACACAAAGTATGGCAAGCCCATTCAAATTAAAGGAGGCATTCCCACTATCTTCCTATGCAATCCAGGCCCACAATCATCATTTAAAGAATATCTCGACGAAGAAAAAAATCAAGCATTAAAAAACTGGGCTACTAAGAATGCAATCTTCGTCACCATCCACCAGCCATTGTTCGCAGATACCAATCAAAATACAACATCACATCGCCAAGAAGAGGCAAGTGAGGCGTAG
Protein Sequence MPRSGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSQALDVIKELAPRDYVLHFHNINSNLDKVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWRPVSIVIEGDSRTGKTTWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQALKNWATKNAIFVTIHQPLFADTNQNTTSHRQEEASEA

NCBI Accession NP_620742.1
Location 2170-2466
Gene Name C4
Protein Name C4 protein
Coding Region ATGAAAATGGGGAACCTCATCTCCATATTCTCATCCAATTCGAAGGAAAATACAATTGTACCAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGATGTTCTTGAATGGGGTACTTTCCAGATCGACGGACGATCTGCTAGGGGAGGACAACAGACAGCCAACGACGCTTACGCAAAGGCAATTAACGCAGGAAGTAAGTCGCAGGCTCTTGATGTAA
Protein Sequence MKMGNLISIFSSNSKENTIVPINDSSTWYPQPGQHISIRTFRELNRAPTSSPISTRTEMFLNGVLSRSTDDLLGEDNRQPTTLTQRQLTQEVSRRLLM

References More References in PubMed

1

Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato.

Sacco Botto C, et al.  Int J Mol Sci. 2023 Feb 2;24(3):2893. doi: 10.3390/ijms24032893.

PMID: 36769211

2

The C4 protein of tomato yellow leaf curl Sardinia virus primes drought tolerance in tomato through morphological adjustments.

Pagliarani C, et al.  Hortic Res. 2022 Jul 27;9:uhac164. doi: 10.1093/hr/uhac164. eCollection 2022.

PMID: 36324645

3

No Evidence for Seed Transmission of Tomato Yellow Leaf Curl Sardinia Virus in Tomato.

Tabein S, et al.  Cells. 2021 Jul 2;10(7):1673. doi: 10.3390/cells10071673.

PMID: 34359841

4

Refining the emergence scenario of the invasive recombinant Tomato yellow leaf curl virus -IS76.

Jammes M, et al.  Virology. 2023 Jan;578:71-80. doi: 10.1016/j.virol.2022.11.006. Epub 2022 Nov 22.

PMID: 36473279

5

Tomato Yellow Leaf Curl Sardinia Virus, a Begomovirus Species Evolving by Mutation and Recombination: A Challenge for Virus Control.

Díaz-Pendón JA, et al.  Viruses. 2019 Jan 9;11(1):45. doi: 10.3390/v11010045.

PMID: 30634476

6

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703

7

Crinivirus Tomato Chlorosis Virus Compromises the Control of Tomato Yellow Leaf Curl Virus in Tomato Plants by the Ty-1 Gene.

Fortes IM, et al.  Phytopathology. 2023 Jul;113(7):1347-1359. doi: 10.1094/PHYTO-09-22-0334-R. Epub 2023 Aug 29.

PMID: 36690608

8

The NLR Protein Encoded by the Resistance Gene Ty-2 Is Triggered by the Replication-Associated Protein Rep/C1 of Tomato Yellow Leaf Curl Virus.

Shen X, et al.  Front Plant Sci. 2020 Sep 10;11:545306. doi: 10.3389/fpls.2020.545306. eCollection 2020.

PMID: 33013967

9

Immunity to tomato yellow leaf curl virus in transgenic tomato is associated with accumulation of transgene small RNA.

Leibman D, et al.  Arch Virol. 2015 Nov;160(11):2727-39. doi: 10.1007/s00705-015-2551-7. Epub 2015 Aug 9.

PMID: 26255053

10

A New Tomato yellow leaf curl virus Strain in Southern Spain.

Morilla G, et al.  Plant Dis. 2003 Aug;87(8):1004. doi: 10.1094/PDIS.2003.87.8.1004B.

PMID: 30812778