Tomato yellow leaf curl Sardinia virus

Basic Information

Genus	Begomovirus
NCBI Assembly	GCF_000844945.1
Release date	2015/2/12
Submitter	Noris,E., Vaira,A.M., Caciagli,P., Masenga,V., Gronenborn,B., Accotto,G.P., Laufs,J., Schumacher,S., Geisler,N., Jupin,I., Desbiez,C., David,C., Mettouchi,A., Traut,W., Heyraud,F., Matzeit,V., Rogers,S.G., Schell,J., Kheyr-Pour,A., Bendahmane,M., Crespi,S.
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Genomic Organization

JBrowse

Genome

NC_003828

TAATATTACCGGATGGCCGCGCTCCCCGATAAAGAAGTGGGTCCTACGCAGTAGTTTCTGTCGACCAATGAAATTGCAGCCTCAAAGCTTAAATAACTGTTCAGCTGTGTTATAAACTTGCTCCCTAAGTTTAAAAAATATACAAAATGTGGGATCCATTATTAAATGAATTTCCTGATTCAGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACTTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTGCAGTCGTACGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATCAAGTCAATTTATATATTAGGAAAGATTTGGATGGATGAAAACATAAAAAAACAAAATCATACTAACCAAGTGATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTACGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCACCAAGAGCAGGCGAAGTATGAAAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACGTTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAATAAAAATTAAATTTTATTTCATGATTTTCAGTTACATCAATTGTTCTTTCAAATACATGAAACAATACATAATCAACTGCTCTAACAACATTATTTAAAGAAATTACACCCAAATTATTCAAATATTTACAGACTTGATATTTAAAGACTCTTAAAAAATGACCAGTCGGAGACTGTAAGGTCGTCCAGATGTGGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAAGTTGTGGTTGAATCTGATTTGGAATGTTAGTGTGTTGTATTTGTTGTTGAATGGGTTCTGATTGTGTCTGGTTATCGTGAAATATAGGGGATTTGTTATCCCGAAGGTATAAACGCCACTCGTTGCTTGATGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTATGCAGTCTAAGTGTATGTAATAAGAGCAGCCACAGTCCAGATCTACCCTTCTACGCCTCACTTGCCTCTTCTTGGCGATGTGATGTTGTATTTTGATTGGTATCTGCGAACAATGGCTGGTGGATGGTGACGAAGATTGCATTCTTAGTAGCCCAGTTTTTTAATGCTTGATTTTTTTCTTCGTCGAGATATTCTTTAAATGATGATTGTGGGCCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTTTTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCACGTTGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTATACTCACCGGTCTCCAAGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCAGTGTTCAAGTTCATCAGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAACATAAGGTGCCGGAGGCACCTGGAAAACCTTATCTAAATTACTATTTATATTATGAAAATGTAGAACGTAATCTCTAGGCGCTAATTCTTTAATTACATCAAGAGCCTGCGACTTACTTCCTGCGTTAATTGCCTTTGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCCCTAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAACATCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTGGTACAATTGTATTTTCCTTCGAATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTAGTTCTCTGCAAATTTTGATGAATAATTTGTTTGTGGGTGTTTGTAGGTTTGTTATTTGGGAAAGTGCATTTTCTTTTGTTAAATCACATTTGGGATATGTAAGGAAATAATTTTTAGCCTTGATACTAAAACGACCTGATCTTGGCATTTTTGCTGTCGTTCTGAATCGGGGGACACTCAAAGTATCCAGCAATTGGGGGAATTGGGGGGCAATATATATGATGCCCCCTAAATGGCATAGATGTAATTATTCAAAGTAATAAATTTATTTTTTAATTTTTTTTTGGTAAAGCGGCCATCCGTA

Gene Information

NCBI Accession	NP_620737.1
Location	147-494
Gene Name	V2
Protein Name	V2 protein
Coding Region	ATGTGGGATCCATTATTAAATGAATTTCCTGATTCAGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACTTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence	MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVSKAADVQNVQKP

NCBI Accession	NP_620738.1
Location	307-1080
Gene Name	V1
Protein Name	capsid protein
Coding Region	ATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTGCAGTCGTACGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATCAAGTCAATTTATATATTAGGAAAGATTTGGATGGATGAAAACATAAAAAAACAAAATCATACTAACCAAGTGATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTACGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCACCAAGAGCAGGCGAAGTATGAAAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACGTTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAA
Protein Sequence	MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWTYRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession	NP_620739.1
Location	1077-1481
Gene Name	C3
Protein Name	C3 protein
Coding Region	ATGGATTTACGCACAGGGGAGTACATCACTGCGCATCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCACGATAACCAGACACAATCAGAACCCATTCAACAACAAATACAACACACTAACATTCCAAATCAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCACATCTGGACGACCTTACAGTCTCCGACTGGTCATTTTTTAAGAGTCTTTAAATATCAAGTCTGTAAATATTTGAATAATTTGGGTGTAATTTCTTTAAATAATGTTGTTAGAGCAGTTGATTATGTATTGTTTCATGTATTTGAAAGAACAATTGATGTAACTGAAAATCATGAAATAAAATTTAATTTTTATTAA
Protein Sequence	MDLRTGEYITAHQATSGVYTFGITNPLYFTITRHNQNPFNNKYNTLTFQIRFNHNLRKELGIHKCFLNFHIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNNVVRAVDYVLFHVFERTIDVTENHEIKFNFY

NCBI Accession	NP_620740.1
Location	1222-1629
Gene Name	C2
Protein Name	C2 protein
Coding Region	ATGCAATCTTCGTCACCATCCACCAGCCATTGTTCGCAGATACCAATCAAAATACAACATCACATCGCCAAGAAGAGGCAAGTGAGGCGTAGAAGGGTAGATCTGGACTGTGGCTGCTCTTATTACATACACTTAGACTGCATAAATCATGGATTTACGCACAGGGGAGTACATCACTGCGCATCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCACGATAACCAGACACAATCAGAACCCATTCAACAACAAATACAACACACTAACATTCCAAATCAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCACATCTGGACGACCTTACAGTCTCCGACTGGTCATTTTTTAAGAGTCTTTAA
Protein Sequence	MQSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHLDCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFHDNQTQSEPIQQQIQHTNIPNQIQPQLEEGTGDSQMFSQLPHLDDLTVSDWSFFKSL

NCBI Accession	NP_620741.1
Location	1538-2617
Gene Name	C1
Protein Name	Rep protein
Coding Region	ATGCCAAGATCAGGTCGTTTTAGTATCAAGGCTAAAAATTATTTCCTTACATATCCCAAATGTGATTTAACAAAAGAAAATGCACTTTCCCAAATAACAAACCTACAAACACCCACAAACAAATTATTCATCAAAATTTGCAGAGAACTACATGAAAATGGGGAACCTCATCTCCATATTCTCATCCAATTCGAAGGAAAATACAATTGTACCAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGATGTTCTTGAATGGGGTACTTTCCAGATCGACGGACGATCTGCTAGGGGAGGACAACAGACAGCCAACGACGCTTACGCAAAGGCAATTAACGCAGGAAGTAAGTCGCAGGCTCTTGATGTAATTAAAGAATTAGCGCCTAGAGATTACGTTCTACATTTTCATAATATAAATAGTAATTTAGATAAGGTTTTCCAGGTGCCTCCGGCACCTTATGTTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCTGATGAACTTGAACACTGGGTTTCCGAGAACGTCATGGATGCCGCTGCGCGGCCTTGGAGACCGGTGAGTATAGTGATTGAGGGTGACAGCCGGACAGGAAAGACAACGTGGGCCCGTTCATTAGGCCCACATAATTATTTGTGCGGCCATCTTGACCTCAGTCAAAAAGTATACAGCAATAATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATTTAAAACACTTTAAAGAATTTATGGGGGCCCAAAGAGATTGGCAAAGCAACACAAAGTATGGCAAGCCCATTCAAATTAAAGGAGGCATTCCCACTATCTTCCTATGCAATCCAGGCCCACAATCATCATTTAAAGAATATCTCGACGAAGAAAAAAATCAAGCATTAAAAAACTGGGCTACTAAGAATGCAATCTTCGTCACCATCCACCAGCCATTGTTCGCAGATACCAATCAAAATACAACATCACATCGCCAAGAAGAGGCAAGTGAGGCGTAG
Protein Sequence	MPRSGRFSIKAKNYFLTYPKCDLTKENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDVLEWGTFQIDGRSARGGQQTANDAYAKAINAGSKSQALDVIKELAPRDYVLHFHNINSNLDKVFQVPPAPYVSPFLSSSFDQVPDELEHWVSENVMDAAARPWRPVSIVIEGDSRTGKTTWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQALKNWATKNAIFVTIHQPLFADTNQNTTSHRQEEASEA

NCBI Accession	NP_620742.1
Location	2170-2466
Gene Name	C4
Protein Name	C4 protein
Coding Region	ATGAAAATGGGGAACCTCATCTCCATATTCTCATCCAATTCGAAGGAAAATACAATTGTACCAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGATGTTCTTGAATGGGGTACTTTCCAGATCGACGGACGATCTGCTAGGGGAGGACAACAGACAGCCAACGACGCTTACGCAAAGGCAATTAACGCAGGAAGTAAGTCGCAGGCTCTTGATGTAA
Protein Sequence	MKMGNLISIFSSNSKENTIVPINDSSTWYPQPGQHISIRTFRELNRAPTSSPISTRTEMFLNGVLSRSTDDLLGEDNRQPTTLTQRQLTQEVSRRLLM

References More References in PubMed

1	Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato. Sacco Botto C, et al. Int J Mol Sci. 2023 Feb 2;24(3):2893. doi: 10.3390/ijms24032893. PMID: 36769211
2	The C4 protein of tomato yellow leaf curl Sardinia virus primes drought tolerance in tomato through morphological adjustments. Pagliarani C, et al. Hortic Res. 2022 Jul 27;9:uhac164. doi: 10.1093/hr/uhac164. eCollection 2022. PMID: 36324645
3	No Evidence for Seed Transmission of Tomato Yellow Leaf Curl Sardinia Virus in Tomato. Tabein S, et al. Cells. 2021 Jul 2;10(7):1673. doi: 10.3390/cells10071673. PMID: 34359841
4	Refining the emergence scenario of the invasive recombinant Tomato yellow leaf curl virus -IS76. Jammes M, et al. Virology. 2023 Jan;578:71-80. doi: 10.1016/j.virol.2022.11.006. Epub 2022 Nov 22. PMID: 36473279
5	Tomato Yellow Leaf Curl Sardinia Virus, a Begomovirus Species Evolving by Mutation and Recombination: A Challenge for Virus Control. Díaz-Pendón JA, et al. Viruses. 2019 Jan 9;11(1):45. doi: 10.3390/v11010045. PMID: 30634476
6	Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector. Díaz-Pendón JA, et al. Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x. PMID: 20618703
7	Crinivirus Tomato Chlorosis Virus Compromises the Control of Tomato Yellow Leaf Curl Virus in Tomato Plants by the Ty-1 Gene. Fortes IM, et al. Phytopathology. 2023 Jul;113(7):1347-1359. doi: 10.1094/PHYTO-09-22-0334-R. Epub 2023 Aug 29. PMID: 36690608
8	The NLR Protein Encoded by the Resistance Gene Ty-2 Is Triggered by the Replication-Associated Protein Rep/C1 of Tomato Yellow Leaf Curl Virus. Shen X, et al. Front Plant Sci. 2020 Sep 10;11:545306. doi: 10.3389/fpls.2020.545306. eCollection 2020. PMID: 33013967
9	Immunity to tomato yellow leaf curl virus in transgenic tomato is associated with accumulation of transgene small RNA. Leibman D, et al. Arch Virol. 2015 Nov;160(11):2727-39. doi: 10.1007/s00705-015-2551-7. Epub 2015 Aug 9. PMID: 26255053
10	A New Tomato yellow leaf curl virus Strain in Southern Spain. Morilla G, et al. Plant Dis. 2003 Aug;87(8):1004. doi: 10.1094/PDIS.2003.87.8.1004B. PMID: 30812778