Tomato yellow leaf curl Mali virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001028945.1
Isolate Burkina Faso
Release date 2015/6/17
Submitter Sattar,M.N., Koutou,M., Husseini,S., Leke,W.N., Brown,J.K., Kvarnheden,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_027215
ACCGGATGGCCGCGCCCTTCCTTTTGTGGTCCCCATTCGGGTCCTATAGACGTCACTATCAACCAATCAAATTGCATCCTCAAACGTTAGATAAGTGTTTATTTGTCTTTATATACTTGTTCTCCAAGTTTTTTGTCATATAATATGTGGGATCCACTCTTAAATGAATTCCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTGTTAAATATTTGCAGGCCGTTGAGGAAACATATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCTTATGAGCAACGGGATGACATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGTTCTGGTATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAGTCCATTTATTTTTTAGGTAAGGTCTGGATGGATGAAAATATCAAGAAGCAGAACCATACTAATCAAGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCGAGTACCGCAACAGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACCGTTATTGGTGGGCCTTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTCTTTAGAGTTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTACTTCTATGATTCAATATCAAATTAATAAAAATTAAATTTTATATCATGGGTTTCTGTTACATCTATTGTCTTTTCAAGTACATCATACAATACATGGTCAACTGCTCTAATTACATTGTTAATGGAAATTACACCTAAACTATCTAAATACTTAAGAACTTGATATCTTCTAAATACTTTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGATTCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTACCTTCCTGATGTTGTGATTGAAGCGGATCTGCATTGAAATGATGTCGTGATCCATGTTGAATGGTTTCTGGCTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAAACGCCATTCTCTGCTTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGGTTGATGCAGTTGATGTGAAGATAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTGATTGGTTTCTTCTTGGCTATCTTGTGTTGGACCTTGATTGGTACTTGAGAACAGTGGCTTATAGAGGGTGATGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAATGACAGGTTTTTTTCTTCATCTAGATATTCTCTATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATTGTTTTTCCGGTACGACTATCACCTTCGATTACAATACTATCAGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTCGGACACCCATACCTCAAGTTCCTCTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAATATAAGGACCTGGAGGCTCCTGAAAAATTCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACGTAATCTTTGGGGGCTAGTTCCCTAATGACTCTAAGAGCTTCCGACTTACTTCTTGAGTTAAGAGCTGCTGCGTAAGCATCGTTTGCAGATTGTTGTCCCCCCCTTGCAGACCTTCCATCGATCTGAAACTCTCCCCAATCGATGGTGTCTCCATCCTTATCGATGTAGGACTTGACATCAGATGATGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTACTTTCCTTCGAACTGAACAAGGGCATGCAGATGAGGTTCCCCATTTTCGTGAAGCTCTCTGCAAATTTTAATGTATAATTTATTTACAGGAGTTTCTAGGGTTTGTAGTTGGGAAAGGGCTTCAGTTAATGAAAGAGAACACTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTTTAAAACGCTTTGGGGGAGCCATTTGGTCAATGTACCCCGATTGACTTGGATTTCATTTGGCACCTGCAATCGGTGTAATGGGGTACAATTTATACTTGTACCCCAAATGGCAATGTTGTAATTTTGCAAAAGTAAATTGCAATTAAAAATTCAAAATTCAAAAATCAAATCATTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009143522.1
Location 145-495
Gene Name V2
Protein Name pre coat protein
Coding Region ATGTGGGATCCACTCTTAAATGAATTCCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTGTTAAATATTTGCAGGCCGTTGAGGAAACATATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHTRLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDVQAHVPKAQNIQNVSKP

NCBI Accession YP_009143523.1
Location 305-1081
Gene Name CP
Protein Name Coat Protein
Coding Region ATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCTTATGAGCAACGGGATGACATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGTTCTGGTATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAGTCCATTTATTTTTTAGGTAAGGTCTGGATGGATGAAAATATCAAGAAGCAGAACCATACTAATCAAGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCGAGTACCGCAACAGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACCGTTATTGGTGGGCCTTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTCTTTAGAGTTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTACTTCTATGATTCAATATCAAATTAA
Protein Sequence MLKRPGDIIISTPASKVRRRLNFDSPYSSRAAAPIVQGINKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRVNSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSISN

NCBI Accession YP_009143524.1
Location 1078-1485
Gene Name REn
Protein Name replication enhancer protein
Coding Region ATGGATTTGCGCACAGGGGAACTCATCACTGCTCCTCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAGCCAGAAACCATTCAACATGGATCACGACATCATTTCAATGCAGATCCGCTTCAATCACAACATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAAAGTATTTAGAAGATATCAAGTTCTTAAGTATTTAGATAGTTTAGGTGTAATTTCCATTAACAATGTAATTAGAGCAGTTGACCATGTATTGTATGATGTACTTGAAAAGACAATAGATGTAACAGAAACCCATGATATAAAATTTAATTTTTATTAA
Protein Sequence MDLRTGELITAPQAENGVFIWEINNPLYFKITEHSQKPFNMDHDIISMQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLKVFRRYQVLKYLDSLGVISINNVIRAVDHVLYDVLEKTIDVTETHDIKFNFY

NCBI Accession YP_009143525.1
Location 1226-1633
Gene Name TrAp
Protein Name transcriptional activator protein
Coding Region ATGCAACCTTCATCACCCTCTATAAGCCACTGTTCTCAAGTACCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATCAGGCGTAAGCGTGTAGACCTAGACTGTGGCTGCTCATACTATCTTCACATCAACTGCATCAACCATGGATTTGCGCACAGGGGAACTCATCACTGCTCCTCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAGCCAGAAACCATTCAACATGGATCACGACATCATTTCAATGCAGATCCGCTTCAATCACAACATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAAAGTATTTAG
Protein Sequence MQPSSPSISHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHINCINHGFAHRGTHHCSSSREWRFYLGDKQSPIFQDNRTQPETIQHGSRHHFNADPLQSQHQEGTGDSQMFSQLPNLDDLTASDWSFLKSI

NCBI Accession YP_009143526.1
Location 1542-2621
Gene Name Rep
Protein Name Replication Associate Protein
Coding Region ATGGCTCCCCCAAAGCGTTTTAAAATAAATGCCAAAAATTATTTCCTTACTTATCCCCAGTGTTCTCTTTCATTAACTGAAGCCCTTTCCCAACTACAAACCCTAGAAACTCCTGTAAATAAATTATACATTAAAATTTGCAGAGAGCTTCACGAAAATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGAAAGTACCAGTGCACAAATAACAGATTCTTCGACCTGGTATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCATCATCTGATGTCAAGTCCTACATCGATAAGGATGGAGACACCATCGATTGGGGAGAGTTTCAGATCGATGGAAGGTCTGCAAGGGGGGGACAACAATCTGCAAACGATGCTTACGCAGCAGCTCTTAACTCAAGAAGTAAGTCGGAAGCTCTTAGAGTCATTAGGGAACTAGCCCCCAAAGATTACGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGAATTTTTCAGGAGCCTCCAGGTCCTTATATTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCAGAGGAACTTGAGGTATGGGTGTCCGAGAACGTCATGTCTTCCGCTGCGCGGCCATGGAGACCTGATAGTATTGTAATCGAAGGTGATAGTCGTACCGGAAAAACAATGTGGGCACGATCGTTAGGTCCACACAATTATTTGTGTGGACATCTCGATCTCAGCCCTAAGATATTTTCAAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGAGCAACACAAAATACGGGAAACCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACTTCATCGTATAGAGAATATCTAGATGAAGAAAAAAACCTGTCATTGAAAAATTGGGCTCTCAAGAATGCAACCTTCATCACCCTCTATAAGCCACTGTTCTCAAGTACCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATCAGGCGTAA
Protein Sequence MAPPKRFKINAKNYFLTYPQCSLSLTEALSQLQTLETPVNKLYIKICRELHENGEPHLHALVQFEGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNSRSKSEALRVIRELAPKDYVLQFHNLNSNLDRIFQEPPGPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPDSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNLSLKNWALKNATFITLYKPLFSSTNQGPTQDSQEETNQA

NCBI Accession YP_009143527.1
Location 2162-2464
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGAAAGTACCAGTGCACAAATAACAGATTCTTCGACCTGGTATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCATCATCTGATGTCAAGTCCTACATCGATAAGGATGGAGACACCATCGATTGGGGAGAGTTTCAGATCGATGGAAGGTCTGCAAGGGGGGGACAACAATCTGCAAACGATGCTTACGCAGCAGCTCTTAACTCAAGAAGTAAGTCGGAAGCTCTTAGAGTCATTAGGGAACTAG
Protein Sequence MGNLICMPLFSSKESTSAQITDSSTWYPQVDQHISIQTFRELNHHLMSSPTSIRMETPSIGESFRSMEGLQGGDNNLQTMLTQQLLTQEVSRKLLESLGN

References More References in PubMed

1

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
2

A severe symptom phenotype in tomato in Mali is caused by a reassortant between a novel recombinant begomovirus (Tomato yellow leaf curl Mali virus) and a betasatellite.

Chen LF, et al.  Mol Plant Pathol. 2009 May;10(3):415-30. doi: 10.1111/j.1364-3703.2009.00541.x.

PMID: 19400843
3

Tomato leaf curl Burkina Faso virus: a novel tomato-infecting monopartite begomovirus from Burkina Faso.

Ouattara A, et al.  Arch Virol. 2017 May;162(5):1427-1429. doi: 10.1007/s00705-017-3231-6. Epub 2017 Feb 4.

PMID: 28161765
4

Evidence of local evolution of tomato-infecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali.

Zhou YC, et al.  Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16.

PMID: 18278427
5

First Report of a Begomovirus Associated with Tomato Yellow Leaf Curl Disease in Ethiopia.

Shih SL, et al.  Plant Dis. 2006 Jul;90(7):974. doi: 10.1094/PD-90-0974A.

PMID: 30781051
6

Complete genomic sequences of Tomato yellow leaf curl Mali virus isolates infecting tomato and pepper from the North Province of Cameroon.

Lett JM, et al.  Arch Virol. 2009;154(3):535-40. doi: 10.1007/s00705-009-0313-0. Epub 2009 Feb 3.

PMID: 19189198
7

Roles and interactions of begomoviruses and satellite DNAs associated with okra leaf curl disease in Mali, West Africa.

Kon T, et al.  J Gen Virol. 2009 Apr;90(Pt 4):1001-1013. doi: 10.1099/vir.0.008102-0. Epub 2009 Mar 4.

PMID: 19264648
8

First Report and Molecular Characterization of DNA A of Three Distinct Begomoviruses Associated with Tomato Leaf Curl Disease in Ghana.

Osei MK, et al.  Plant Dis. 2008 Nov;92(11):1585. doi: 10.1094/PDIS-92-11-1585B.

PMID: 30764452
9

Virus surveys of Capsicum spp. in the Republic of Benin reveal the prevalence of pepper vein yellows virus and the identification of a previously uncharacterised polerovirus species.

Afouda L, et al.  Arch Virol. 2017 Jun;162(6):1599-1607. doi: 10.1007/s00705-017-3274-8. Epub 2017 Feb 20.

PMID: 28220324