Tomato yellow leaf curl Indonesia virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000869285.1
Isolate Indonesia:Lembang
Release date 2015/2/13
Submitter Tsai,W.S., Shih,S.L., Green,S.K., Akkermans,D., Jan,F.-J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_008267
ACCTACAGGCCGCCGGGGCCCGGGGTCACTATGGTCCCCCCCCACTTTAGCTGCTTTTGCTTTTGCTTTAATGTGGTCCCGTAATAAATGAGAGAGCGCGATGAGCGCTTAGTTGATTTGTGGTCCTTCTATAAAACGTGCTGGGCACGGAGAAAGCTGAATAGCCATGTGGGATCCTCTTTTAAACGAATTTCCGGATTCTGTTCACGGTTTTCGGTGTATGCTCGCAATAAAGTATTTGCAAGGCGTTGAAGCAACCTACGCCCCTGATACTGTCGGTTACGACCTAGTTCGAGATCTGATCTCAGTTGTTCGTGCGAGCAATTATGCTGAAGCGTGCCGGAGATATAGCCTTTTCCGGTCCCGTATCGAAAGTACGCCGTCGTCTCAATTACGACAGCCCAGGTACCAGCCGTGCTGCTGTACTCACTGCCCTCGGCATAAATCGAAAGAAGTCTTGGACTTCTCGGCCTATGTACCGGAAGCCCAGGATTTACCGGATGTACCGAACAGCTGATGTCCCTAGGGGATGTGAAGGTCCTTGCAAGATTCAATCCTTTGAATCTCGACATGATATTGCTCACACCGGTAAGGTTATGTGTGTGACGGATGTTACTCGTGGCGGTGGTTTAACCCACCGTACTGGGAAGAGATTTTGCGTTAAGTCCCTCTATATCCTTGGCAAAATCTGGATGGATGAAAATATCAAGACTAAGAATCACACTAACACGGTCATGTTCTATGTTGTTCGGGATCGTAGACCCTATGGTACTCCTCAAGATTTTGGACAAGTGTTTAACATGTTCGATAACGAACCTAGCACTGCAACTGTCAAGAATGATCTTCGAGATCGGTTTCAAGTTTTGCGGAAGTTCACGGCAACTGTTGTTGGTGGTCAGTATGCTTGTAAGGAACAAACGTTAGTTAGGAAGTTCATGAGATTGAACAATTATGTTGTTTACAACCATCAGGAAACCGCAAAATATGAGAATCATACAGAGAATGCTCTGTTATTGTACATGGCATCTACGCATGCCTCTAACCCTGTGTATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAATGTTGAATTTTATTTCATAATCTGGTTGTACATCAATAGTGCGTTCTAGCACTTTAAACAAGACATGGTCTACAGCTCTAATTACATTATTAATTGAAATTACACCTAAATTATTCAAGTATTTAATACATTGAGTCTTAAAGACTTTTAAGAAAAGCCCAGTCGGAGGGTGTAAGTAAGTCCAAACTTGGAACGTCAGAAAACACCGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGCAGCCGTATTGTTATCACGTCGTGGTTCGTGTTGAACGGCCGGCTGTGATGGCTGAGTATCTTGAAATAGAGGGGATTTTGAATCTCCCAAATATAGACGCCATTCCTGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTAGCACAGTTTATTGACACGTAGTATGAGCAACCGCAATTAAGGTCTACCCGCCGTCGTCTTATTATCTTCTTTTTAGCAATCCGGTGCTGGACTTTGATGGGAACCTGAGTACAGTGGTCTCTCGAGGGTGATGAATTCTGCATTATGAAGAGACCAATTTTTAAGTGCGATGTTTTTAGGTTCGTCTAAAAACTCTTTATATGAAGATGTGGGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTTGAGTAAACCCTAGGATTGAGATCTAGATGGCCGCACAAGTAATTGTGCCTACCAAGCGATCTAGCCCACATGGTTTTACCTGTACGACTATCACCTTGTAACACCAGACTCTTTGGTCTTAATGGCCGCGCAGCGGGGTCGACTATGTTCTCGGCGACCCATTCTTCAAGTTCTTCAGGAACCTGGTCAAAGGATGAAGATAAGAATGGAGAGGTAAAGACTGGTTGCGGAGTCATGAAGATCTTGTCAAGATTTGTGTTCAAGTTATGAAACTGCAAGATGTAATCTTTAGGCGCAAGTTCTTTAAGAATATTCAGAGCCTCCGCTTTGTTTCCTGCATTCATAGCTTTTGCATAAGCGTCGTTAGCGGATTGCTTTCCGCCTCTTGAAGATCTTCCATCTATTTGGAAGGTACCCCATTCAAGGGTATCACCATCCTTTTCGATATATGCTTTGACATCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCTGGTTGGGGATACCAGATCGAAGAACCTCTTGTTCTTTGTCTTGAACTTACCCTCAAATTGGATAAGCACATGGAGATGTGGTTCCCCATCCTCGTGAAGCTCTGAGCAGATTTTGATATATTTTTTATTTGTTGGGGTATTCAAATTTCTAATTTGAGAGAGAGCTTCGCTTTTAGAGAGAGAGCAGTGAGGATAGGTGAGGAAATAGTTTTTAGCGTTTATTTGAAAACGCTTTGTGAGAGAGTTATTAGAGGGGGTTCCCCGATTGCTCTCCATTCCATCTATCGTATGTATATTGGGGAACGGGGACCTATAAATACTTCTGTCCCCAATAGGTTTTGTGCTTACGTGGCGGCCTGTAGTATAATATT

Gene Information

NCBI Accession YP_699989.1
Location 167-517
Gene Name V2
Protein Name precoat protein
Coding Region ATGTGGGATCCTCTTTTAAACGAATTTCCGGATTCTGTTCACGGTTTTCGGTGTATGCTCGCAATAAAGTATTTGCAAGGCGTTGAAGCAACCTACGCCCCTGATACTGTCGGTTACGACCTAGTTCGAGATCTGATCTCAGTTGTTCGTGCGAGCAATTATGCTGAAGCGTGCCGGAGATATAGCCTTTTCCGGTCCCGTATCGAAAGTACGCCGTCGTCTCAATTACGACAGCCCAGGTACCAGCCGTGCTGCTGTACTCACTGCCCTCGGCATAAATCGAAAGAAGTCTTGGACTTCTCGGCCTATGTACCGGAAGCCCAGGATTTACCGGATGTACCGAACAGCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQGVEATYAPDTVGYDLVRDLISVVRASNYAEACRRYSLFRSRIESTPSSQLRQPRYQPCCCTHCPRHKSKEVLDFSAYVPEAQDLPDVPNS

NCBI Accession YP_699990.1
Location 327-1100
Gene Name V1
Protein Name coat protein
Coding Region ATGCTGAAGCGTGCCGGAGATATAGCCTTTTCCGGTCCCGTATCGAAAGTACGCCGTCGTCTCAATTACGACAGCCCAGGTACCAGCCGTGCTGCTGTACTCACTGCCCTCGGCATAAATCGAAAGAAGTCTTGGACTTCTCGGCCTATGTACCGGAAGCCCAGGATTTACCGGATGTACCGAACAGCTGATGTCCCTAGGGGATGTGAAGGTCCTTGCAAGATTCAATCCTTTGAATCTCGACATGATATTGCTCACACCGGTAAGGTTATGTGTGTGACGGATGTTACTCGTGGCGGTGGTTTAACCCACCGTACTGGGAAGAGATTTTGCGTTAAGTCCCTCTATATCCTTGGCAAAATCTGGATGGATGAAAATATCAAGACTAAGAATCACACTAACACGGTCATGTTCTATGTTGTTCGGGATCGTAGACCCTATGGTACTCCTCAAGATTTTGGACAAGTGTTTAACATGTTCGATAACGAACCTAGCACTGCAACTGTCAAGAATGATCTTCGAGATCGGTTTCAAGTTTTGCGGAAGTTCACGGCAACTGTTGTTGGTGGTCAGTATGCTTGTAAGGAACAAACGTTAGTTAGGAAGTTCATGAGATTGAACAATTATGTTGTTTACAACCATCAGGAAACCGCAAAATATGAGAATCATACAGAGAATGCTCTGTTATTGTACATGGCATCTACGCATGCCTCTAACCCTGTGTATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA
Protein Sequence MLKRAGDIAFSGPVSKVRRRLNYDSPGTSRAAVLTALGINRKKSWTSRPMYRKPRIYRMYRTADVPRGCEGPCKIQSFESRHDIAHTGKVMCVTDVTRGGGLTHRTGKRFCVKSLYILGKIWMDENIKTKNHTNTVMFYVVRDRRPYGTPQDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFTATVVGGQYACKEQTLVRKFMRLNNYVVYNHQETAKYENHTENALLLYMASTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_699991.1
Location 1097-1501
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCAGGAATGGCGTCTATATTTGGGAGATTCAAAATCCCCTCTATTTCAAGATACTCAGCCATCACAGCCGGCCGTTCAACACGAACCACGACGTGATAACAATACGGCTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCGGTGTTTTCTGACGTTCCAAGTTTGGACTTACTTACACCCTCCGACTGGGCTTTTCTTAAAAGTCTTTAAGACTCAATGTATTAAATACTTGAATAATTTAGGTGTAATTTCAATTAATAATGTAATTAGAGCTGTAGACCATGTCTTGTTTAAAGTGCTAGAACGCACTATTGATGTACAACCAGATTATGAAATAAAATTCAACATTTATTAA
Protein Sequence MDLRTGEYITAAQARNGVYIWEIQNPLYFKILSHHSRPFNTNHDVITIRLQFNHNLRKALGIHRCFLTFQVWTYLHPPTGLFLKVFKTQCIKYLNNLGVISINNVIRAVDHVLFKVLERTIDVQPDYEIKFNIY

NCBI Accession YP_699992.1
Location 1242-1649
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGAATTCATCACCCTCGAGAGACCACTGTACTCAGGTTCCCATCAAAGTCCAGCACCGGATTGCTAAAAAGAAGATAATAAGACGACGGCGGGTAGACCTTAATTGCGGTTGCTCATACTACGTGTCAATAAACTGTGCTAATCATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCAGGAATGGCGTCTATATTTGGGAGATTCAAAATCCCCTCTATTTCAAGATACTCAGCCATCACAGCCGGCCGTTCAACACGAACCACGACGTGATAACAATACGGCTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCGGTGTTTTCTGACGTTCCAAGTTTGGACTTACTTACACCCTCCGACTGGGCTTTTCTTAAAAGTCTTTAA
Protein Sequence MQNSSPSRDHCTQVPIKVQHRIAKKKIIRRRRVDLNCGCSYYVSINCANHGFTHRGVHHCSSSQEWRLYLGDSKSPLFQDTQPSQPAVQHEPRRDNNTAAVQPQPEESVGNTPVFSDVPSLDLLTPSDWAFLKSL

NCBI Accession YP_699993.1
Location 1579-2667
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGAGAGCAATCGGGGAACCCCCTCTAATAACTCTCTCACAAAGCGTTTTCAAATAAACGCTAAAAACTATTTCCTCACCTATCCTCACTGCTCTCTCTCTAAAAGCGAAGCTCTCTCTCAAATTAGAAATTTGAATACCCCAACAAATAAAAAATATATCAAAATCTGCTCAGAGCTTCACGAGGATGGGGAACCACATCTCCATGTGCTTATCCAATTTGAGGGTAAGTTCAAGACAAAGAACAAGAGGTTCTTCGATCTGGTATCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAAGCATATATCGAAAAGGATGGTGATACCCTTGAATGGGGTACCTTCCAAATAGATGGAAGATCTTCAAGAGGCGGAAAGCAATCCGCTAACGACGCTTATGCAAAAGCTATGAATGCAGGAAACAAAGCGGAGGCTCTGAATATTCTTAAAGAACTTGCGCCTAAAGATTACATCTTGCAGTTTCATAACTTGAACACAAATCTTGACAAGATCTTCATGACTCCGCAACCAGTCTTTACCTCTCCATTCTTATCTTCATCCTTTGACCAGGTTCCTGAAGAACTTGAAGAATGGGTCGCCGAGAACATAGTCGACCCCGCTGCGCGGCCATTAAGACCAAAGAGTCTGGTGTTACAAGGTGATAGTCGTACAGGTAAAACCATGTGGGCTAGATCGCTTGGTAGGCACAATTACTTGTGCGGCCATCTAGATCTCAATCCTAGGGTTTACTCAAATGACGCATGGTATAACGTCATTGATGACGTCGATCCGCATTACCTAAAGCACTTTAAAGAGTTTATGGGGGCCCAGATGGACTGGCAAAGCAATACAAAGTATGGTAGACCCATTCAAATTAAAGGCGGGATACCGACCATCTTTTTATGTAATGCTGGACCCACATCTTCATATAAAGAGTTTTTAGACGAACCTAAAAACATCGCACTTAAAAATTGGTCTCTTCATAATGCAGAATTCATCACCCTCGAGAGACCACTGTACTCAGGTTCCCATCAAAGTCCAGCACCGGATTGCTAA
Protein Sequence MESNRGTPSNNSLTKRFQINAKNYFLTYPHCSLSKSEALSQIRNLNTPTNKKYIKICSELHEDGEPHLHVLIQFEGKFKTKNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKAYIEKDGDTLEWGTFQIDGRSSRGGKQSANDAYAKAMNAGNKAEALNILKELAPKDYILQFHNLNTNLDKIFMTPQPVFTSPFLSSSFDQVPEELEEWVAENIVDPAARPLRPKSLVLQGDSRTGKTMWARSLGRHNYLCGHLDLNPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQMDWQSNTKYGRPIQIKGGIPTIFLCNAGPTSSYKEFLDEPKNIALKNWSLHNAEFITLERPLYSGSHQSPAPDC

NCBI Accession YP_699994.1
Location 2283-2480
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCACATCTCCATGTGCTTATCCAATTTGAGGGTAAGTTCAAGACAAAGAACAAGAGGTTCTTCGATCTGGTATCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAAGCATATATCGAAAAGGATGGTGATACCCTTGAATGGGGTACCTTCCAAATAG
Protein Sequence MGNHISMCLSNLRVSSRQRTRGSSIWYPQPDQHISIRTFRELNQAPMSKHISKRMVIPLNGVPSK

References More References in PubMed

1

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
2

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
3

Ty-2 and Ty-3a Conferred Resistance are Insufficient Against Tomato Yellow Leaf Curl Kanchanaburi Virus from Southeast Asia in Single or Mixed Infections of Tomato.

Koeda S, et al.  Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12.

PMID: 33044916
4

Complete Genome Sequence of a Pepper Yellow Leaf Curl Indonesia Virus Isolated from Tomato in Bali, Indonesia.

Neriya Y, et al.  Microbiol Resour Announc. 2020 Jun 18;9(25):e00486-20. doi: 10.1128/MRA.00486-20.

PMID: 32554790
5

Identification of a New Begomovirus Associated with Yellow Leaf Curl Diseases of Tomato and Pepper in Sulawesi, Indonesia.

Tsai WS, et al.  Plant Dis. 2009 Mar;93(3):321. doi: 10.1094/PDIS-93-3-0321C.

PMID: 30764201
6

Molecular Characterization of Pepper yellow leaf curl Indonesia virus in Leaf Curl and Yellowing Diseased Tomato and Pepper in Indonesia.

Tsai WS, et al.  Plant Dis. 2006 Feb;90(2):247. doi: 10.1094/PD-90-0247B.

PMID: 30786428
7

First Report of Pepper yellow leaf curl Indonesia virus in Ageratum conyzoides in Indonesia.

Shibuya Y, et al.  Plant Dis. 2007 Sep;91(9):1198. doi: 10.1094/PDIS-91-9-1198B.

PMID: 30780641
8

Strains of a new bipartite begomovirus, pepper yellow leaf curl Indonesia virus, in leaf-curl-diseased tomato and yellow-vein-diseased ageratum in Indonesia.

Sakata JJ, et al.  Arch Virol. 2008;153(12):2307-13. doi: 10.1007/s00705-008-0254-z. Epub 2008 Nov 18.

PMID: 19015934
9

A begomovirus associated with Ageratum yellow vein disease in Indonesia: evidence for natural recombination between tomato leaf curl Java virus and Ageratum yellow vein virus-[Java].

Kon T, et al.  Arch Virol. 2007;152(6):1147-57. doi: 10.1007/s00705-006-0928-3. Epub 2007 Feb 12.

PMID: 17294343
10

Molecular Characterization of a Distinct Tomato-Infecting Begomovirus Associated with Yellow Leaf Curl Diseased Tomato in Lembang, Java Island of Indonesia.

Tsai WS, et al.  Plant Dis. 2006 Jun;90(6):831. doi: 10.1094/PD-90-0831B.

PMID: 30781263