Tomato yellow leaf curl China virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000862185.1 |
| Release date |
2015/2/13 |
| Submitter |
Yin,Q., Yang,H., Gong,Q., Wang,H., Liu,Y., Hong,Y., Tien,P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTTAAAGTGGTCCCCCCCATGTGCGCGTTTGTCCAATAGAAGGCGCTCCTCAAAGCTTATTTATTAAATGGTCCCCTATAAAACGTAGCTCCCAAGTATATACGTTAAACATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTGCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTCGAAAATACATACTCCCCCGATACATTAGGTTACGATTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAGGGGTTGTGAAGGCCCATGTAAAGTTCAATCATGTGAGGCCCGTCATGATGTTTCACATACTGGTAAGGTTATTTGTGTATCGGATGTTACTCGTGGTAACGGTATTACTCACCGTGTTGGCAAGAGGTTCTGTGTTAAATCCATTTACGTCATTGGGAAAATATGGATGGACGAAAATATTAAATTTAAGAATCATACAAATACAGTAATGTTTTTTCTTGTTAGAGATCGACGTCCAAGTGGTACTCCTATGGATTTCCAGCAAGTCTTTAATTGTTATGACAATGAACCTAGCACTGCTACTGTAAAAAACGATTTAAGGGATCGTTTTCAAGTTCGTCGTAAATTTTATTCAACGGTTACGGGCGGACAGTATGCTTGTAAGGAGCAGGCGTTGGTGAAGAGATTTATCCGTCTTAATACTCATGTTGTTTACAACCATCAAGAACAGGCGAAGTACGAGAATCATACGGAGAATGCATTATTGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAGTGCGCATCTATTTCTATGATTCACAAATGAATTAATAAATATTGAATTTTATATCATGTTTTTCAATTACATCTATTGTTCCATTCAGTACATCATATAATACATGACTAAAAGCCCTAATACAATTGTTAATGCTAATCACTCCCAACCTATCTAAATATTTAATAAATTGGTATTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAACGAGTCCAGATTTGGCAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGTATTGTGATTATGTCGTGGTTCCTCAGAAATGGTCTCTCGTGGTGTTTGGTTATCTTGAAATACAGGGGATTTTTGACCGTCCAGATATACACGCCATTCTCTGATTGAGCTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCATGATTGTGACAGCCTAAAGCAACGAAGTAAGAACAACCACAAGGTAGATCAACCCGTCGTCGTCTGGTTGTCTTCTTGGCGATTCGGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGGCCCGTTGAGGGAGACGAAGATCGCATTCTTTACAGCCCAGTTTCGAAGTGCTGAGTTCTTTTCTTCTTCCAGATACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGACTCAGATCCAAATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTATCACTATACTTACCGGTCTTAAAGGCCGCGCAGCGGCACTCACAACATTATCGACCGCCCACTCATCAAGTTCTTCGGGAACTTGGTCAAATGAAGAAGAAGAAAAAGGAGAAATATATTCCACTATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTTTCCCTCAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTGTGGGGATGTGAGATCGAAGAATCTTTGATTCTTACACTGGAACTTTCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCTCTACAGATTCTGATAAATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCCTCTTCCTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTCTGAATTTATTTGGGGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAAATGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATTATCGTAATTCCCAAAAGAAATTCAAAATTCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_660164.1
|
|
Location
|
133-480 |
|
Gene Name
|
AV1 |
|
Protein Name
|
AV1 protein |
|
Coding Region
|
ATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTGCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTCGAAAATACATACTCCCCCGATACATTAGGTTACGATTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARDYGETSRRYCHFHSRLEGASPAELRQPLYGSCCCPHCPRHQKTNVVKQAHVPEAHDVPDVQKP |
|
NCBI Accession
|
NP_660165.1
|
|
Location
|
293-1063 |
|
Gene Name
|
AV2 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAGGGGTTGTGAAGGCCCATGTAAAGTTCAATCATGTGAGGCCCGTCATGATGTTTCACATACTGGTAAGGTTATTTGTGTATCGGATGTTACTCGTGGTAACGGTATTACTCACCGTGTTGGCAAGAGGTTCTGTGTTAAATCCATTTACGTCATTGGGAAAATATGGATGGACGAAAATATTAAATTTAAGAATCATACAAATACAGTAATGTTTTTTCTTGTTAGAGATCGACGTCCAAGTGGTACTCCTATGGATTTCCAGCAAGTCTTTAATTGTTATGACAATGAACCTAGCACTGCTACTGTAAAAAACGATTTAAGGGATCGTTTTCAAGTTCGTCGTAAATTTTATTCAACGGTTACGGGCGGACAGTATGCTTGTAAGGAGCAGGCGTTGGTGAAGAGATTTATCCGTCTTAATACTCATGTTGTTTACAACCATCAAGAACAGGCGAAGTACGAGAATCATACGGAGAATGCATTATTGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAGTGCGCATCTATTTCTATGATTCACAAATGAATTAA |
|
Protein Sequence
|
MAKRPADIVISTPASKVRRRLNFDSPYTGRVAAPTVRVTRRQMWSNRPMYRKPMMYRMYRSPDVPRGCEGPCKVQSCEARHDVSHTGKVICVSDVTRGNGITHRVGKRFCVKSIYVIGKIWMDENIKFKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEPSTATVKNDLRDRFQVRRKFYSTVTGGQYACKEQALVKRFIRLNTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKVRIYFYDSQMN |
|
NCBI Accession
|
NP_660166.1
|
|
Location
|
1060-1464 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTACTCACTGCAGCTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTGTATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAACCACGACATAATCACAATACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAAATACCAATTTATTAAATATTTAGATAGGTTGGGAGTGATTAGCATTAACAATTGTATTAGGGCTTTTAGTCATGTATTATATGATGTACTGAATGGAACAATAGATGTAATTGAAAAACATGATATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELLTAAQSENGVYIWTVKNPLYFKITKHHERPFLRNHDIITIQVQFNYNLRKALGIHKCFLTCQIWTRLHPQTSHFLRVFKYQFIKYLDRLGVISINNCIRAFSHVLYDVLNGTIDVIEKHDIKFNIY |
|
NCBI Accession
|
NP_660167.1
|
|
Location
|
1205-1609 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCGATCTTCGTCTCCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGAATCGCCAAGAAGACAACCAGACGACGACGGGTTGATCTACCTTGTGGTTGTTCTTACTTCGTTGCTTTAGGCTGTCACAATCATGGATTCACGCACAGGGGAACTACTCACTGCAGCTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTGTATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAACCACGACATAATCACAATACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MRSSSPSTGHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTTHCSSIREWRVYLDGQKSPVFQDNQTPRETISEEPRHNHNTSPIQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
NP_660168.1
|
|
Location
|
1512-2597 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGGCTCCCCCAAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAGGAAGAGGCACTTTCCCAAATTAAAACCCTAGAAACCCCAGTAAATAAACTATTTATCAGAATCTGTAGAGAATTACACGAAGATGGGTCTCCTCACTTGCATGTTCTCATCCAATTCGAAGGAAAGTTCCAGTGTAAGAATCAAAGATTCTTCGATCTCACATCCCCACACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTGAGGGAAAAGGCTCCTAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATAGTGGAATATATTTCTCCTTTTTCTTCTTCTTCATTTGACCAAGTTCCCGAAGAACTTGATGAGTGGGCGGTCGATAATGTTGTGAGTGCCGCTGCGCGGCCTTTAAGACCGGTAAGTATAGTGATAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCATTAGGACCACATAATTACTTGTGTGGTCATTTGGATCTGAGTCCAAAGGTGTACAGTAATGATGCTTGGTTCAACGTCATTGATGACGTAGATCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAGTTCAAATTAAAGGCGGGATCCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTATCTGGAAGAAGAAAAGAACTCAGCACTTCGAAACTGGGCTGTAAAGAATGCGATCTTCGTCTCCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGAATCGCCAAGAAGACAACCAGACGACGACGGGTTGA |
|
Protein Sequence
|
MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKTLETPVNKLFIRICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPHRSAHFHPNIQGAKSSTDVKSYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIVEYISPFSSSSFDQVPEELDEWAVDNVVSAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAVKNAIFVSLNGPLYSGSYQGATPNRQEDNQTTTG |
|
NCBI Accession
|
NP_660169.1
|
|
Location
|
2147-2440 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCCTCACTTGCATGTTCTCATCCAATTCGAAGGAAAGTTCCAGTGTAAGAATCAAAGATTCTTCGATCTCACATCCCCACACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTGA |
|
Protein Sequence
|
MGLLTCMFSSNSKESSSVRIKDSSISHPHTGQHISIRTFRELKAQQMSNPTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY |