Tomato yellow leaf curl China virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000862185.1
Release date 2015/2/13
Submitter Yin,Q., Yang,H., Gong,Q., Wang,H., Liu,Y., Hong,Y., Tien,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004044
ACCGGATGGCCGCGCGATTTTTTTTAAAGTGGTCCCCCCCATGTGCGCGTTTGTCCAATAGAAGGCGCTCCTCAAAGCTTATTTATTAAATGGTCCCCTATAAAACGTAGCTCCCAAGTATATACGTTAAACATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTGCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTCGAAAATACATACTCCCCCGATACATTAGGTTACGATTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAGGGGTTGTGAAGGCCCATGTAAAGTTCAATCATGTGAGGCCCGTCATGATGTTTCACATACTGGTAAGGTTATTTGTGTATCGGATGTTACTCGTGGTAACGGTATTACTCACCGTGTTGGCAAGAGGTTCTGTGTTAAATCCATTTACGTCATTGGGAAAATATGGATGGACGAAAATATTAAATTTAAGAATCATACAAATACAGTAATGTTTTTTCTTGTTAGAGATCGACGTCCAAGTGGTACTCCTATGGATTTCCAGCAAGTCTTTAATTGTTATGACAATGAACCTAGCACTGCTACTGTAAAAAACGATTTAAGGGATCGTTTTCAAGTTCGTCGTAAATTTTATTCAACGGTTACGGGCGGACAGTATGCTTGTAAGGAGCAGGCGTTGGTGAAGAGATTTATCCGTCTTAATACTCATGTTGTTTACAACCATCAAGAACAGGCGAAGTACGAGAATCATACGGAGAATGCATTATTGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAGTGCGCATCTATTTCTATGATTCACAAATGAATTAATAAATATTGAATTTTATATCATGTTTTTCAATTACATCTATTGTTCCATTCAGTACATCATATAATACATGACTAAAAGCCCTAATACAATTGTTAATGCTAATCACTCCCAACCTATCTAAATATTTAATAAATTGGTATTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAACGAGTCCAGATTTGGCAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGTATTGTGATTATGTCGTGGTTCCTCAGAAATGGTCTCTCGTGGTGTTTGGTTATCTTGAAATACAGGGGATTTTTGACCGTCCAGATATACACGCCATTCTCTGATTGAGCTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCATGATTGTGACAGCCTAAAGCAACGAAGTAAGAACAACCACAAGGTAGATCAACCCGTCGTCGTCTGGTTGTCTTCTTGGCGATTCGGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGGCCCGTTGAGGGAGACGAAGATCGCATTCTTTACAGCCCAGTTTCGAAGTGCTGAGTTCTTTTCTTCTTCCAGATACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGACTCAGATCCAAATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTATCACTATACTTACCGGTCTTAAAGGCCGCGCAGCGGCACTCACAACATTATCGACCGCCCACTCATCAAGTTCTTCGGGAACTTGGTCAAATGAAGAAGAAGAAAAAGGAGAAATATATTCCACTATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTTTCCCTCAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTGTGGGGATGTGAGATCGAAGAATCTTTGATTCTTACACTGGAACTTTCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCTCTACAGATTCTGATAAATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCCTCTTCCTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTCTGAATTTATTTGGGGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAAATGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATTATCGTAATTCCCAAAAGAAATTCAAAATTCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_660164.1
Location 133-480
Gene Name AV1
Protein Name AV1 protein
Coding Region ATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTGCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTCGAAAATACATACTCCCCCGATACATTAGGTTACGATTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARDYGETSRRYCHFHSRLEGASPAELRQPLYGSCCCPHCPRHQKTNVVKQAHVPEAHDVPDVQKP

NCBI Accession NP_660165.1
Location 293-1063
Gene Name AV2
Protein Name coat protein
Coding Region ATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAGGGGTTGTGAAGGCCCATGTAAAGTTCAATCATGTGAGGCCCGTCATGATGTTTCACATACTGGTAAGGTTATTTGTGTATCGGATGTTACTCGTGGTAACGGTATTACTCACCGTGTTGGCAAGAGGTTCTGTGTTAAATCCATTTACGTCATTGGGAAAATATGGATGGACGAAAATATTAAATTTAAGAATCATACAAATACAGTAATGTTTTTTCTTGTTAGAGATCGACGTCCAAGTGGTACTCCTATGGATTTCCAGCAAGTCTTTAATTGTTATGACAATGAACCTAGCACTGCTACTGTAAAAAACGATTTAAGGGATCGTTTTCAAGTTCGTCGTAAATTTTATTCAACGGTTACGGGCGGACAGTATGCTTGTAAGGAGCAGGCGTTGGTGAAGAGATTTATCCGTCTTAATACTCATGTTGTTTACAACCATCAAGAACAGGCGAAGTACGAGAATCATACGGAGAATGCATTATTGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAGTGCGCATCTATTTCTATGATTCACAAATGAATTAA
Protein Sequence MAKRPADIVISTPASKVRRRLNFDSPYTGRVAAPTVRVTRRQMWSNRPMYRKPMMYRMYRSPDVPRGCEGPCKVQSCEARHDVSHTGKVICVSDVTRGNGITHRVGKRFCVKSIYVIGKIWMDENIKFKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEPSTATVKNDLRDRFQVRRKFYSTVTGGQYACKEQALVKRFIRLNTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKVRIYFYDSQMN

NCBI Accession NP_660166.1
Location 1060-1464
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAACTACTCACTGCAGCTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTGTATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAACCACGACATAATCACAATACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAAATACCAATTTATTAAATATTTAGATAGGTTGGGAGTGATTAGCATTAACAATTGTATTAGGGCTTTTAGTCATGTATTATATGATGTACTGAATGGAACAATAGATGTAATTGAAAAACATGATATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELLTAAQSENGVYIWTVKNPLYFKITKHHERPFLRNHDIITIQVQFNYNLRKALGIHKCFLTCQIWTRLHPQTSHFLRVFKYQFIKYLDRLGVISINNCIRAFSHVLYDVLNGTIDVIEKHDIKFNIY

NCBI Accession NP_660167.1
Location 1205-1609
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGATCTTCGTCTCCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGAATCGCCAAGAAGACAACCAGACGACGACGGGTTGATCTACCTTGTGGTTGTTCTTACTTCGTTGCTTTAGGCTGTCACAATCATGGATTCACGCACAGGGGAACTACTCACTGCAGCTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTGTATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAACCACGACATAATCACAATACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAA
Protein Sequence MRSSSPSTGHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTTHCSSIREWRVYLDGQKSPVFQDNQTPRETISEEPRHNHNTSPIQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI

NCBI Accession NP_660168.1
Location 1512-2597
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGGCTCCCCCAAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAGGAAGAGGCACTTTCCCAAATTAAAACCCTAGAAACCCCAGTAAATAAACTATTTATCAGAATCTGTAGAGAATTACACGAAGATGGGTCTCCTCACTTGCATGTTCTCATCCAATTCGAAGGAAAGTTCCAGTGTAAGAATCAAAGATTCTTCGATCTCACATCCCCACACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTGAGGGAAAAGGCTCCTAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATAGTGGAATATATTTCTCCTTTTTCTTCTTCTTCATTTGACCAAGTTCCCGAAGAACTTGATGAGTGGGCGGTCGATAATGTTGTGAGTGCCGCTGCGCGGCCTTTAAGACCGGTAAGTATAGTGATAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCATTAGGACCACATAATTACTTGTGTGGTCATTTGGATCTGAGTCCAAAGGTGTACAGTAATGATGCTTGGTTCAACGTCATTGATGACGTAGATCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAGTTCAAATTAAAGGCGGGATCCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTATCTGGAAGAAGAAAAGAACTCAGCACTTCGAAACTGGGCTGTAAAGAATGCGATCTTCGTCTCCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGAATCGCCAAGAAGACAACCAGACGACGACGGGTTGA
Protein Sequence MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKTLETPVNKLFIRICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPHRSAHFHPNIQGAKSSTDVKSYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIVEYISPFSSSSFDQVPEELDEWAVDNVVSAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAVKNAIFVSLNGPLYSGSYQGATPNRQEDNQTTTG

NCBI Accession NP_660169.1
Location 2147-2440
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCACTTGCATGTTCTCATCCAATTCGAAGGAAAGTTCCAGTGTAAGAATCAAAGATTCTTCGATCTCACATCCCCACACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTGA
Protein Sequence MGLLTCMFSSNSKESSSVRIKDSSISHPHTGQHISIRTFRELKAQQMSNPTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

First Report of Tomato yellow leaf curl virus Infecting Common Bean in China.

Ji YH, et al.  Plant Dis. 2012 Aug;96(8):1229. doi: 10.1094/PDIS-03-12-0258-PDN.

PMID: 30727082
2

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
3

Tomato Yellow Leaf Curl China Virus Impairs Photosynthesis in the Infected Nicotiana benthamiana with βC1 as an Aggravating Factor.

Farooq T, et al.  Plant Pathol J. 2019 Oct;35(5):521-529. doi: 10.5423/PPJ.OA.04.2019.0120. Epub 2019 Oct 1.

PMID: 31632226
4

Molecular characterization and pathogenicity of tomato yellow leaf curl virus in China.

Zhang H, et al.  Virus Genes. 2009 Oct;39(2):249-55. doi: 10.1007/s11262-009-0384-8.

PMID: 19590945
5

First Report of Tomato yellow leaf curl China virus with Betasatellite Infecting Panax notoginseng.

Li XJ, et al.  Plant Dis. 2014 Sep;98(9):1284. doi: 10.1094/PDIS-03-14-0255-PDN.

PMID: 30699620
6

Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana.

Wu M, et al.  BMC Genomics. 2019 Jul 4;20(1):542. doi: 10.1186/s12864-019-5842-7.

PMID: 31272383
7

A DNAbeta associated with Tomato yellow leaf curl China virus is required for symptom induction.

Cui X, et al.  J Virol. 2004 Dec;78(24):13966-74. doi: 10.1128/JVI.78.24.13966-13974.2004.

PMID: 15564504
8

First Report of Ageratum yellow vein virus Causing Tobacco Leaf Curl Disease in Fujian Province, China.

Liu Z, et al.  Plant Dis. 2008 Jan;92(1):177. doi: 10.1094/PDIS-92-1-0177B.

PMID: 30786379
9

Whitefly HES1 binds to the intergenic region of Tomato yellow leaf curl China virus and promotes viral gene transcription.

Wang YM, et al.  Virology. 2020 Mar;542:54-62. doi: 10.1016/j.virol.2020.01.009. Epub 2020 Jan 21.

PMID: 32056668
10

Dynamic Subcellular Localization, Accumulation, and Interactions of Proteins From Tomato Yellow Leaf Curl China Virus and Its Associated Betasatellite.

Li H, et al.  Front Plant Sci. 2020 Jun 16;11:840. doi: 10.3389/fpls.2020.00840. eCollection 2020.

PMID: 32612626