Tomato yellow leaf curl Axarquia virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000880235.1
Isolate Italy: Sicily, Ragusa
Release date 2015/2/22
Submitter Davino,S., Napoli,C., Dellacroce,C., Miozzi,L., Noris,E., Davino,M., Accotto,G.P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_011024
TAATATTACCGGATGGCCGCGCTCCCCGATAAAGAAGTGGGTCCTACGCAGTAATTTCTGTCGACCAATGAAATTCCAGCCTCAAAGCTTAAATAATTGTTTAGCTTTCTTATAAACTTGCTCACTAAGTTTTAAAAATACCACAAAATGTGGGATCCATTATTAAATGAATTTCCTGATTCTGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACCTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTTCAGTCCTATGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTTACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATTAAGTCAATTTATATTTTAGGGAAGATTTGGATGGATGAAAATATAAAAAAACAAAATCATACTAACCAGGTTATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTAAGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCATCAAGAGCAGGCGAAGTATGAGAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACATTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAATAAAGATTAAATTTTATTTCATGATTTTCAGCTACATCAATTGTTCCTTCAAATACATCATACAATACATAATCAACTGCTCTAATAACATTATTTAAAGAAATTACACCCAAATTATTCAAATATTTACAAACTTGATATTTAAATACTCTTAAAAAATGACCAGTCGGAGACTGTAAAGTCGTCCAAATGCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAAATTGTGGTTGAATCTGATTTGGAATATTAGTGTGTTGTACTTGTTGTTGAATGGGTTCTGATTGTGTTTGGTTATCTTGAAATATAGGGGATTTGTTATCCCGAAGGTATAAACGCCACTCGTTGCTTGAAGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTATGCAGTCTAAGTGTATGTAATATGAGCATCCACAGTCCAGATCGACCCTTCTACGCCTCACCTGCCTCTTCTTGGCGATGTGGTGTTGTATTTTGATGGGTATCTGTGAACAATGGCTGGTGGATGGTGACGAAGATCGCATTCTTAATAGCCCAATTTTTTAATGGTTGGTTTTTTTCTTCGTCGAGATATTCTTTAAATGATGATTGTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCATACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAAGGAACGGGCCCACATGGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTATACTTACCGGTCTCCAAGGCCGCGCAGCGGCATCCATGACGTTCTCGGCGACCCACTCTTCAAGTTCATCTGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGAAACATAAACTTCTAAAGGAGGACTAAAAATCCTATCTAAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGATTTACTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAATTCTCCGTCTTTCTCCACGTAGGTCTTGACATCTGTTGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTTTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGATAACAATTGGGATATGTCAGGAAATAATTTTTGGCATATATTTTAAATAAACGAGGCATGTTGAAATGAATCGGTGTCCCTCACAGCTCTATGGCAATCGGTGTATTGGTGTCTTACTTATACCTGGACACCTAATGGCTATATGGTAATTTAATAAATGTTTATTGCAATTCAAAATTCAAACTTCAAAAATCAAATCATTAAAGCGGCCATCCGTA

Gene Information

NCBI Accession YP_001994907.1
Location 148-495
Gene Name V2
Protein Name precoat protein
Coding Region ATGTGGGATCCATTATTAAATGAATTTCCTGATTCTGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACCTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVSKAADVQNVQKP

NCBI Accession YP_001994908.1
Location 308-1081
Gene Name V1
Protein Name coat protein
Coding Region ATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTTCAGTCCTATGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTTACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATTAAGTCAATTTATATTTTAGGGAAGATTTGGATGGATGAAAATATAAAAAAACAAAATCATACTAACCAGGTTATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTAAGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCATCAAGAGCAGGCGAAGTATGAGAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACATTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAA
Protein Sequence MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWTYRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession YP_001994909.1
Location 1078-1482
Gene Name C3
Protein Name REn protein
Coding Region ATGGATTTACGCACAGGGGAGTACATCACTGCGCTTCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCAAGATAACCAAACACAATCAGAACCCATTCAACAACAAGTACAACACACTAATATTCCAAATCAGATTCAACCACAATTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCGCATTTGGACGACTTTACAGTCTCCGACTGGTCATTTTTTAAGAGTATTTAAATATCAAGTTTGTAAATATTTGAATAATTTGGGTGTAATTTCTTTAAATAATGTTATTAGAGCAGTTGATTATGTATTGTATGATGTATTTGAAGGAACAATTGATGTAGCTGAAAATCATGAAATAAAATTTAATCTTTATTAA
Protein Sequence MDLRTGEYITALQATSGVYTFGITNPLYFKITKHNQNPFNNKYNTLIFQIRFNHNLRKELGIHKCFLNFRIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNNVIRAVDYVLYDVFEGTIDVAENHEIKFNLY

NCBI Accession YP_001994910.1
Location 1223-1630
Gene Name C2
Protein Name TrAP protein
Coding Region ATGCGATCTTCGTCACCATCCACCAGCCATTGTTCACAGATACCCATCAAAATACAACACCACATCGCCAAGAAGAGGCAGGTGAGGCGTAGAAGGGTCGATCTGGACTGTGGATGCTCATATTACATACACTTAGACTGCATAAATCATGGATTTACGCACAGGGGAGTACATCACTGCGCTTCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCAAGATAACCAAACACAATCAGAACCCATTCAACAACAAGTACAACACACTAATATTCCAAATCAGATTCAACCACAATTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCGCATTTGGACGACTTTACAGTCTCCGACTGGTCATTTTTTAAGAGTATTTAA
Protein Sequence MRSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHLDCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFQDNQTQSEPIQQQVQHTNIPNQIQPQFEEGTGDSQMFSQLPHLDDFTVSDWSFFKSI

NCBI Accession YP_001994911.1
Location 1539-2612
Gene Name C1
Protein Name Rep protein
Coding Region ATGCCTCGTTTATTTAAAATATATGCCAAAAATTATTTCCTGACATATCCCAATTGTTATCTCTCTAAAGAGGAAGCACTTTCCCAATTAAAAAACCTAGAAACCCCAACAAATAAAAAATACATCAAAGTTTGCAGAGAATTCCACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAAAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGAATTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAGTAAATCCGAGGCCCTCAATATATTAAAAGAGAAGGCCCCAAAGGACTATATTTTACAATTTCATAATTTAAGTTCAAATTTAGATAGGATTTTTAGTCCTCCTTTAGAAGTTTATGTTTCTCCATTTCTTTCTTCTTCTTTTAATCAAGTTCCAGATGAACTTGAAGAGTGGGTCGCCGAGAACGTCATGGATGCCGCTGCGCGGCCTTGGAGACCGGTAAGTATAGTGATTGAGGGTGACAGCCGGACAGGAAAGACCATGTGGGCCCGTTCCTTAGGCCCACATAATTATTTGTGCGGCCATCTTGACCTCAGTCAAAAAGTATACAGCAATAATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATTTAAAGCACTTTAAAGAGTTTATGGGGGCCCAAAGAGACTGGCAGAGCAACACCAAGTATGGGAAGCCCATTCAAATTAAAGGAGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCACAATCATCATTTAAAGAATATCTCGACGAAGAAAAAAACCAACCATTAAAAAATTGGGCTATTAAGAATGCGATCTTCGTCACCATCCACCAGCCATTGTTCACAGATACCCATCAAAATACAACACCACATCGCCAAGAAGAGGCAGGTGAGGCGTAG
Protein Sequence MPRLFKIYAKNYFLTYPNCYLSKEEALSQLKNLETPTNKKYIKVCREFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEKDGEFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNLSSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVMDAAARPWRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQPLKNWAIKNAIFVTIHQPLFTDTHQNTTPHRQEEAGEA

NCBI Accession YP_001994912.1
Location 2168-2461
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAAAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGAATTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAGTAAATCCGAGGCCCTCAATATATTAA
Protein Sequence MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLRAQQMSRPTWRKTENSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY

References More References in PubMed

1

Tomato yellow leaf curl viruses: menage a trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
2

Scientific Opinion on the pest categorisation of Tomato yellow leaf curl virus and related viruses causing tomato yellow leaf curl disease in Europe.

EFSA Panel on Plant Health (PLH).  EFSA J. 2014 Oct 15;12(10):3850. doi: 10.2903/j.efsa.2014.3850. eCollection 2014 Oct.

PMID: 42087957
3

Recurrent speciation of a tomato yellow leaf curl geminivirus in Portugal by recombination.

Fiallo-Olivé E, et al.  Sci Rep. 2019 Feb 4;9(1):1332. doi: 10.1038/s41598-018-37971-z.

PMID: 30718735
4

Begomovirus genetic diversity in the native plant reservoir Solanum nigrum: Evidence for the presence of a new virus species of recombinant nature.

García-Andrés S, et al.  Virology. 2006 Jul 5;350(2):433-42. doi: 10.1016/j.virol.2006.02.028. Epub 2006 Mar 31.

PMID: 16580040