Tomato yellow leaf curl Axarquia virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000880235.1
Isolate Italy: Sicily, Ragusa
Release date 2015/2/22
Submitter Davino,S., Napoli,C., Dellacroce,C., Miozzi,L., Noris,E., Davino,M., Accotto,G.P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_011024
TAATATTACCGGATGGCCGCGCTCCCCGATAAAGAAGTGGGTCCTACGCAGTAATTTCTGTCGACCAATGAAATTCCAGCCTCAAAGCTTAAATAATTGTTTAGCTTTCTTATAAACTTGCTCACTAAGTTTTAAAAATACCACAAAATGTGGGATCCATTATTAAATGAATTTCCTGATTCTGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACCTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTTCAGTCCTATGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTTACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATTAAGTCAATTTATATTTTAGGGAAGATTTGGATGGATGAAAATATAAAAAAACAAAATCATACTAACCAGGTTATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTAAGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCATCAAGAGCAGGCGAAGTATGAGAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACATTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAATAAAGATTAAATTTTATTTCATGATTTTCAGCTACATCAATTGTTCCTTCAAATACATCATACAATACATAATCAACTGCTCTAATAACATTATTTAAAGAAATTACACCCAAATTATTCAAATATTTACAAACTTGATATTTAAATACTCTTAAAAAATGACCAGTCGGAGACTGTAAAGTCGTCCAAATGCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAAATTGTGGTTGAATCTGATTTGGAATATTAGTGTGTTGTACTTGTTGTTGAATGGGTTCTGATTGTGTTTGGTTATCTTGAAATATAGGGGATTTGTTATCCCGAAGGTATAAACGCCACTCGTTGCTTGAAGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTATGCAGTCTAAGTGTATGTAATATGAGCATCCACAGTCCAGATCGACCCTTCTACGCCTCACCTGCCTCTTCTTGGCGATGTGGTGTTGTATTTTGATGGGTATCTGTGAACAATGGCTGGTGGATGGTGACGAAGATCGCATTCTTAATAGCCCAATTTTTTAATGGTTGGTTTTTTTCTTCGTCGAGATATTCTTTAAATGATGATTGTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCATACTTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAAATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAAGGAACGGGCCCACATGGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTATACTTACCGGTCTCCAAGGCCGCGCAGCGGCATCCATGACGTTCTCGGCGACCCACTCTTCAAGTTCATCTGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGAAACATAAACTTCTAAAGGAGGACTAAAAATCCTATCTAAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGATTTACTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAATTCTCCGTCTTTCTCCACGTAGGTCTTGACATCTGTTGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTTTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAATTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGATAACAATTGGGATATGTCAGGAAATAATTTTTGGCATATATTTTAAATAAACGAGGCATGTTGAAATGAATCGGTGTCCCTCACAGCTCTATGGCAATCGGTGTATTGGTGTCTTACTTATACCTGGACACCTAATGGCTATATGGTAATTTAATAAATGTTTATTGCAATTCAAAATTCAAACTTCAAAAATCAAATCATTAAAGCGGCCATCCGTA

Gene Information

NCBI Accession YP_001994907.1
Location 148-495
Gene Name V2
Protein Name precoat protein
Coding Region ATGTGGGATCCATTATTAAATGAATTTCCTGATTCTGTCCATGGTCTCCGATGCATGCTCGCAATTAAATATTTGCAGCTAGTTGAAGAAACCTACGAACCTAATACCCTTGGTCACGACCTAATTAGGGATCTCATCTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRRYTNFNARLEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVSKAADVQNVQKP

NCBI Accession YP_001994908.1
Location 308-1081
Gene Name V1
Protein Name coat protein
Coding Region ATGCCGAAGCGAACCGGCGATATACTAATTTCAACGCCCGTCTCGAAGGTTCGTCGAAGACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTACCTCCGGGTTGTGAAGGTCCCTGTAAAGTTCAGTCCTATGAGCAGCGTGATGACGTCAAGCATACCGGTGTTGTGCGTTGTGTTAGTGATGTTACTAGGGGTTCTGGTATTACTCATAGAGTTGGTAAACGTTTTTGTATTAAGTCAATTTATATTTTAGGGAAGATTTGGATGGATGAAAATATAAAAAAACAAAATCATACTAACCAGGTTATGTTTTTCCTTGTTCGAGACCGAAGGCCTTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCCAGTACTGCTACGGTGAAGAACGACTTAAGGGATAGGTATCAAGTAATGAGGAAGTTTCATGCTACGGTTGTTGGAGGTCCGTCAGGGATGAAGGAGCAGTGTTTGCTGAAGAGATTTTTTAAAATTAATACCCATGTAGTTTATAATCATCAAGAGCAGGCGAAGTATGAGAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCTTCTAACCCAGTGTACGCTACATTGAAAATACGTATTTATTTTTATGATGCTGTAACAAATTAA
Protein Sequence MPKRTGDILISTPVSKVRRRLNFDSPYTSRAAAPTVQGIKRRSWTYRPMYRKPRMYRMYRSPDVPPGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKINTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession YP_001994909.1
Location 1078-1482
Gene Name C3
Protein Name REn protein
Coding Region ATGGATTTACGCACAGGGGAGTACATCACTGCGCTTCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCAAGATAACCAAACACAATCAGAACCCATTCAACAACAAGTACAACACACTAATATTCCAAATCAGATTCAACCACAATTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCGCATTTGGACGACTTTACAGTCTCCGACTGGTCATTTTTTAAGAGTATTTAAATATCAAGTTTGTAAATATTTGAATAATTTGGGTGTAATTTCTTTAAATAATGTTATTAGAGCAGTTGATTATGTATTGTATGATGTATTTGAAGGAACAATTGATGTAGCTGAAAATCATGAAATAAAATTTAATCTTTATTAA
Protein Sequence MDLRTGEYITALQATSGVYTFGITNPLYFKITKHNQNPFNNKYNTLIFQIRFNHNLRKELGIHKCFLNFRIWTTLQSPTGHFLRVFKYQVCKYLNNLGVISLNNVIRAVDYVLYDVFEGTIDVAENHEIKFNLY

NCBI Accession YP_001994910.1
Location 1223-1630
Gene Name C2
Protein Name TrAP protein
Coding Region ATGCGATCTTCGTCACCATCCACCAGCCATTGTTCACAGATACCCATCAAAATACAACACCACATCGCCAAGAAGAGGCAGGTGAGGCGTAGAAGGGTCGATCTGGACTGTGGATGCTCATATTACATACACTTAGACTGCATAAATCATGGATTTACGCACAGGGGAGTACATCACTGCGCTTCAAGCAACGAGTGGCGTTTATACCTTCGGGATAACAAATCCCCTATATTTCAAGATAACCAAACACAATCAGAACCCATTCAACAACAAGTACAACACACTAATATTCCAAATCAGATTCAACCACAATTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCGCATTTGGACGACTTTACAGTCTCCGACTGGTCATTTTTTAAGAGTATTTAA
Protein Sequence MRSSSPSTSHCSQIPIKIQHHIAKKRQVRRRRVDLDCGCSYYIHLDCINHGFTHRGVHHCASSNEWRLYLRDNKSPIFQDNQTQSEPIQQQVQHTNIPNQIQPQFEEGTGDSQMFSQLPHLDDFTVSDWSFFKSI

NCBI Accession YP_001994911.1
Location 1539-2612
Gene Name C1
Protein Name Rep protein
Coding Region ATGCCTCGTTTATTTAAAATATATGCCAAAAATTATTTCCTGACATATCCCAATTGTTATCTCTCTAAAGAGGAAGCACTTTCCCAATTAAAAAACCTAGAAACCCCAACAAATAAAAAATACATCAAAGTTTGCAGAGAATTCCACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAAAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGAATTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAGTAAATCCGAGGCCCTCAATATATTAAAAGAGAAGGCCCCAAAGGACTATATTTTACAATTTCATAATTTAAGTTCAAATTTAGATAGGATTTTTAGTCCTCCTTTAGAAGTTTATGTTTCTCCATTTCTTTCTTCTTCTTTTAATCAAGTTCCAGATGAACTTGAAGAGTGGGTCGCCGAGAACGTCATGGATGCCGCTGCGCGGCCTTGGAGACCGGTAAGTATAGTGATTGAGGGTGACAGCCGGACAGGAAAGACCATGTGGGCCCGTTCCTTAGGCCCACATAATTATTTGTGCGGCCATCTTGACCTCAGTCAAAAAGTATACAGCAATAATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTATTTAAAGCACTTTAAAGAGTTTATGGGGGCCCAAAGAGACTGGCAGAGCAACACCAAGTATGGGAAGCCCATTCAAATTAAAGGAGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCACAATCATCATTTAAAGAATATCTCGACGAAGAAAAAAACCAACCATTAAAAAATTGGGCTATTAAGAATGCGATCTTCGTCACCATCCACCAGCCATTGTTCACAGATACCCATCAAAATACAACACCACATCGCCAAGAAGAGGCAGGTGAGGCGTAG
Protein Sequence MPRLFKIYAKNYFLTYPNCYLSKEEALSQLKNLETPTNKKYIKVCREFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEKDGEFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNLSSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVMDAAARPWRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSQKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPQSSFKEYLDEEKNQPLKNWAIKNAIFVTIHQPLFTDTHQNTTPHRQEEAGEA

NCBI Accession YP_001994912.1
Location 2168-2461
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAAAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGAATTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAGTAAATCCGAGGCCCTCAATATATTAA
Protein Sequence MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLRAQQMSRPTWRKTENSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY

References More References in PubMed

1

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
2

Recurrent speciation of a tomato yellow leaf curl geminivirus in Portugal by recombination.

Fiallo-Olivé E, et al.  Sci Rep. 2019 Feb 4;9(1):1332. doi: 10.1038/s41598-018-37971-z.

PMID: 30718735
3

Begomovirus genetic diversity in the native plant reservoir Solanum nigrum: Evidence for the presence of a new virus species of recombinant nature.

García-Andrés S, et al.  Virology. 2006 Jul 5;350(2):433-42. doi: 10.1016/j.virol.2006.02.028. Epub 2006 Mar 31.

PMID: 16580040