Tomato vein clearing leaf deformation virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_018585205.1 |
| Isolate |
Argentina |
| Release date |
2021/6/1 |
| Submitter |
Vaghi Medina,C.G., Bornancini,V.A., Lopez Lambertini,P.M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCCCGAAGTTTTGGAGACATTGTGATAGGTCTTTAATTTGAATAAAGGACGCGGCGTGGGTTTTGTGGTCCCTTTCTCGGAAATTTCGCCGCAATTACGTGTGGGCCAACGAGAGCGCGTCTTGAAAGCTTAGTTATTTGATAAGTCTTGGTCGCTAAGTTTGACACGTGTATAAATTGGTACGACATATAAATGTCTCATCAATCATGTTGCTGAACCCGACATGATTGGGTGGAGTGGATGCTTTATGTCTCCATTTGATTTCTAGTTCGAAATGCCGAAGCGGGATGGTTCATGGCGTTCGATCGAGGGAACGTCGAAGGTTAGGCGCTCCCTCAATTTTTCGCCCCGTGGAGGTACGGGCTTTAAAGTTAATAAATCACAGGCCTGGGTTAATAGGCCCATGTACAGGAAGCCCAGGATCTATCGGGCTTTCAGATCGCCTGATGTTCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCGTACGAGCAACGCCATGATATCGCTCATACTGGGAAGGTGATATGCATCTCCGACGTGACGCGTGGCAATGGCATCACTCACCGTGTCGGTAAGCGTTTCTGTGTGAAGTCTGTCTATATCTTAGGTAAGATATGGATGGATGACAATATCAAGCTGAGGAACCACACGAACAACGTGATGTTCTGGCTGGTGAGAGACCGGAGACCGTATGGTACCCCCATGGATTTCGGACAGGTGTTTAACTTGTTCGACAACGAGCCAAGCACCGCCACCGTGAAGAACGATCTCCGTGATCGTTTCCAAGTGATGCACAAGTTCCACACCACGGTCACGGGTGGTCAGTATGCTGCCAAGGAGCAGGCCCTGGTTAAGCGGTTCTGGAAGGTCAACAACCATGTGACCTATAACCATCAGGAGGCTGCTAAGTACGAGAACCACACTGAGAACGCCCTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCTGTGTATGCTACATTGAAGATTCGGATCTATTTTTATGATTCGACTTCAAATTAATAAAGTTTGAATTTTATTGAATGATGTTCGAGTACATAAGTTACATATGCTTTATCTGTTGCGAAACGAACAGCTCTAATTACATTATTAATTGAAATAACACCTAATTGATCTAAATACAATAAAACTAAATGTCTAAGTCTATTTAAATATGTCGTCCCAGAAGCTGTCACTGATGTCGTCCAGACCTGGAAGTTCAAGAAGGCTTTGTGAAGACCCAGCTCCTTCCTCAAGTTGTGGTTGAACCGGATCTGGATGTGGTACACTCTGGCGTTCGTGTATAGGGGGTCTTCCACCCTGGTTATTTTGAAATACAGGGGATTTGTTATCTCCCAGATATACACGCCATTCTCTGCTTGAGGCGCAGTGATGAATTCCCCTGTGCGTGAATCCATGATTGGCGCAGTTGATGTGCCTGAAGAAAGAGCAGCCGCAATCGATGTCGATTCGTCTACGGCGAATTGCCCTGCGCTTGGCCGCTCTGTGTGCTACCTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCTTAAAGATGCATTTTCCTCTTTGTCTAGGAATGCTTTATAGCTGGAACCCGCTCCTGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTTGACTGCCAGTCTCTTTGGGCCCCAATTATCTCTTTCCAGTGCTTTAGATATTGCGGATTGACATCATCAATGACGTTGTAATCCACATTGTTTGAGTAAACCCTAGAATTTAAATCTAAGTGTCCACACAAATAATTATGTGGGCCCAGAGCACGCGCCCACATCGTCTTCCCCGTCCGACTATCACCCTCGACGATTATACTAATAGGTCGTTCCGGCCGCGCAGCGGAACTCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGCCCATGGTTCCGGAGGCTTCTGAAATATCCGTTCTAGATTTGATCGGATGTTATGATGTTGAAGGACGAAGTCTTTTGGTTGTTCTTCCTTCAGTATATTGAGCGCCTCCAAGATGGATCCAGCGTTGAGGACCTTGGCATACGTATCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTGTTTCTCCACATAGGTTTTGACGTCCGATGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGAGATACAAGATCGAAGAATCTTTGATTTGTGCAGACGTATTTTCCTTCGAACTGGATGAGCACATGGAGATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAACCCTAATGAATTTCTTGTTGACAGGAGTCCCTAGGGCTTGCAATTGGGATAGGGCTTCTTCTTTAGAAAGGGAACAATGTGGGTAAGTGAGGAAGAAATTCTTGGATTGGACTCTAAAACGCTTCGGAGCTGATGGCATTTTTGTAATAATGGGGATGTCTCCAATTGGAGCTCTCGCAAAGTATTCAAATGAATTGGAGACTGGAGTACAATATATACAAGTGCCCTTAATCTTGAAAATCTCCACGTGGCGGCCATCCGTTATAATATT
Gene Information
|
NCBI Accession
|
YP_010087636.1
|
|
Location
|
286-1041 |
|
Gene Name
|
AV1 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCGAAGCGGGATGGTTCATGGCGTTCGATCGAGGGAACGTCGAAGGTTAGGCGCTCCCTCAATTTTTCGCCCCGTGGAGGTACGGGCTTTAAAGTTAATAAATCACAGGCCTGGGTTAATAGGCCCATGTACAGGAAGCCCAGGATCTATCGGGCTTTCAGATCGCCTGATGTTCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCGTACGAGCAACGCCATGATATCGCTCATACTGGGAAGGTGATATGCATCTCCGACGTGACGCGTGGCAATGGCATCACTCACCGTGTCGGTAAGCGTTTCTGTGTGAAGTCTGTCTATATCTTAGGTAAGATATGGATGGATGACAATATCAAGCTGAGGAACCACACGAACAACGTGATGTTCTGGCTGGTGAGAGACCGGAGACCGTATGGTACCCCCATGGATTTCGGACAGGTGTTTAACTTGTTCGACAACGAGCCAAGCACCGCCACCGTGAAGAACGATCTCCGTGATCGTTTCCAAGTGATGCACAAGTTCCACACCACGGTCACGGGTGGTCAGTATGCTGCCAAGGAGCAGGCCCTGGTTAAGCGGTTCTGGAAGGTCAACAACCATGTGACCTATAACCATCAGGAGGCTGCTAAGTACGAGAACCACACTGAGAACGCCCTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCTGTGTATGCTACATTGAAGATTCGGATCTATTTTTATGATTCGACTTCAAATTAA |
|
Protein Sequence
|
MPKRDGSWRSIEGTSKVRRSLNFSPRGGTGFKVNKSQAWVNRPMYRKPRIYRAFRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKNDLRDRFQVMHKFHTTVTGGQYAAKEQALVKRFWKVNNHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSTSN |
|
NCBI Accession
|
YP_010087637.1
|
|
Location
|
1038-1436 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATTCATCACTGCGCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTGTATTTCAAAATAACCAGGGTGGAAGACCCCCTATACACGAACGCCAGAGTGTACCACATCCAGATCCGGTTCAACCACAACTTGAGGAAGGAGCTGGGTCTTCACAAAGCCTTCTTGAACTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAGACTTAGACATTTAGTTTTATTGTATTTAGATCAATTAGGTGTTATTTCAATTAATAATGTAATTAGAGCTGTTCGTTTCGCAACAGATAAAGCATATGTAACTTATGTACTCGAACATCATTCAATAAAATTCAAACTTTATTAA |
|
Protein Sequence
|
MDSRTGEFITAPQAENGVYIWEITNPLYFKITRVEDPLYTNARVYHIQIRFNHNLRKELGLHKAFLNFQVWTTSVTASGTTYLNRLRHLVLLYLDQLGVISINNVIRAVRFATDKAYVTYVLEHHSIKFKLY |
|
NCBI Accession
|
YP_010087638.1
|
|
Location
|
1183-1572 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGGTAGCACACAGAGCGGCCAAGCGCAGGGCAATTCGCCGTAGACGAATCGACATCGATTGCGGCTGCTCTTTCTTCAGGCACATCAACTGCGCCAATCATGGATTCACGCACAGGGGAATTCATCACTGCGCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTGTATTTCAAAATAACCAGGGTGGAAGACCCCCTATACACGAACGCCAGAGTGTACCACATCCAGATCCGGTTCAACCACAACTTGAGGAAGGAGCTGGGTCTTCACAAAGCCTTCTTGAACTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAG |
|
Protein Sequence
|
MLNSSSSTPPSIKVAHRAAKRRAIRRRRIDIDCGCSFFRHINCANHGFTHRGIHHCASSREWRVYLGDNKSPVFQNNQGGRPPIHERQSVPHPDPVQPQLEEGAGSSQSLLELPGLDDISDSFWDDIFK |
|
NCBI Accession
|
YP_010087639.1
|
|
Location
|
1493-2566 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCATCAGCTCCGAAGCGTTTTAGAGTCCAATCCAAGAATTTCTTCCTCACTTACCCACATTGTTCCCTTTCTAAAGAAGAAGCCCTATCCCAATTGCAAGCCCTAGGGACTCCTGTCAACAAGAAATTCATTAGGGTTTGCAGAGAACTCCATGAGAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAAGGAAAATACGTCTGCACAAATCAAAGATTCTTCGATCTTGTATCTCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCATCGGACGTCAAAACCTATGTGGAGAAACACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGATACGTATGCCAAGGTCCTCAACGCTGGATCCATCTTGGAGGCGCTCAATATACTGAAGGAAGAACAACCAAAAGACTTCGTCCTTCAACATCATAACATCCGATCAAATCTAGAACGGATATTTCAGAAGCCTCCGGAACCATGGGCTCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCGGACGATTATTTTGGGAGGAGTTCCGCTGCGCGGCCGGAACGACCTATTAGTATAATCGTCGAGGGTGATAGTCGGACGGGGAAGACGATGTGGGCGCGTGCTCTGGGCCCACATAATTATTTGTGTGGACACTTAGATTTAAATTCTAGGGTTTACTCAAACAATGTGGATTACAACGTCATTGATGATGTCAATCCGCAATATCTAAAGCACTGGAAAGAGATAATTGGGGCCCAAAGAGACTGGCAGTCAAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTATGCAATCCAGGAGCGGGTTCCAGCTATAAAGCATTCCTAGACAAAGAGGAAAATGCATCTTTAAGAGCCTGGACACTCCACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGGTAGCACACAGAGCGGCCAAGCGCAGGGCAATTCGCCGTAG |
|
Protein Sequence
|
MPSAPKRFRVQSKNFFLTYPHCSLSKEEALSQLQALGTPVNKKFIRVCRELHENGEPHLHVLIQFEGKYVCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYVEKHGDFIDFGVFQIDGRSARGGQQSANDTYAKVLNAGSILEALNILKEEQPKDFVLQHHNIRSNLERIFQKPPEPWAPPFPLSSFTNVPDEMQEWADDYFGRSSAARPERPISIIVEGDSRTGKTMWARALGPHNYLCGHLDLNSRVYSNNVDYNVIDDVNPQYLKHWKEIIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGAGSSYKAFLDKEENASLRAWTLHNAKFIFLDSPLYQGSTQSGQAQGNSP |
|
NCBI Accession
|
YP_010087640.1
|
|
Location
|
2113-2412 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAGAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAAGGAAAATACGTCTGCACAAATCAAAGATTCTTCGATCTTGTATCTCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCATCGGACGTCAAAACCTATGTGGAGAAACACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGATACGTATGCCAAGGTCCTCAACGCTGGATCCATCTTGGAGGCGCTCAATATACTGA |
|
Protein Sequence
|
MRMGSLISMCSSSSKENTSAQIKDSSILYLQPGQHISIRTFRELRAHRTSKPMWRNTETSLILEFSKSMADQLEEVSNLPTIRMPRSSTLDPSWRRSIY |