Tomato vein clearing leaf deformation virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_018585205.1
Isolate Argentina
Release date 2021/6/1
Submitter Vaghi Medina,C.G., Bornancini,V.A., Lopez Lambertini,P.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055570
ACCGGATGGCCGCCCGAAGTTTTGGAGACATTGTGATAGGTCTTTAATTTGAATAAAGGACGCGGCGTGGGTTTTGTGGTCCCTTTCTCGGAAATTTCGCCGCAATTACGTGTGGGCCAACGAGAGCGCGTCTTGAAAGCTTAGTTATTTGATAAGTCTTGGTCGCTAAGTTTGACACGTGTATAAATTGGTACGACATATAAATGTCTCATCAATCATGTTGCTGAACCCGACATGATTGGGTGGAGTGGATGCTTTATGTCTCCATTTGATTTCTAGTTCGAAATGCCGAAGCGGGATGGTTCATGGCGTTCGATCGAGGGAACGTCGAAGGTTAGGCGCTCCCTCAATTTTTCGCCCCGTGGAGGTACGGGCTTTAAAGTTAATAAATCACAGGCCTGGGTTAATAGGCCCATGTACAGGAAGCCCAGGATCTATCGGGCTTTCAGATCGCCTGATGTTCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCGTACGAGCAACGCCATGATATCGCTCATACTGGGAAGGTGATATGCATCTCCGACGTGACGCGTGGCAATGGCATCACTCACCGTGTCGGTAAGCGTTTCTGTGTGAAGTCTGTCTATATCTTAGGTAAGATATGGATGGATGACAATATCAAGCTGAGGAACCACACGAACAACGTGATGTTCTGGCTGGTGAGAGACCGGAGACCGTATGGTACCCCCATGGATTTCGGACAGGTGTTTAACTTGTTCGACAACGAGCCAAGCACCGCCACCGTGAAGAACGATCTCCGTGATCGTTTCCAAGTGATGCACAAGTTCCACACCACGGTCACGGGTGGTCAGTATGCTGCCAAGGAGCAGGCCCTGGTTAAGCGGTTCTGGAAGGTCAACAACCATGTGACCTATAACCATCAGGAGGCTGCTAAGTACGAGAACCACACTGAGAACGCCCTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCTGTGTATGCTACATTGAAGATTCGGATCTATTTTTATGATTCGACTTCAAATTAATAAAGTTTGAATTTTATTGAATGATGTTCGAGTACATAAGTTACATATGCTTTATCTGTTGCGAAACGAACAGCTCTAATTACATTATTAATTGAAATAACACCTAATTGATCTAAATACAATAAAACTAAATGTCTAAGTCTATTTAAATATGTCGTCCCAGAAGCTGTCACTGATGTCGTCCAGACCTGGAAGTTCAAGAAGGCTTTGTGAAGACCCAGCTCCTTCCTCAAGTTGTGGTTGAACCGGATCTGGATGTGGTACACTCTGGCGTTCGTGTATAGGGGGTCTTCCACCCTGGTTATTTTGAAATACAGGGGATTTGTTATCTCCCAGATATACACGCCATTCTCTGCTTGAGGCGCAGTGATGAATTCCCCTGTGCGTGAATCCATGATTGGCGCAGTTGATGTGCCTGAAGAAAGAGCAGCCGCAATCGATGTCGATTCGTCTACGGCGAATTGCCCTGCGCTTGGCCGCTCTGTGTGCTACCTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCTTAAAGATGCATTTTCCTCTTTGTCTAGGAATGCTTTATAGCTGGAACCCGCTCCTGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTTGACTGCCAGTCTCTTTGGGCCCCAATTATCTCTTTCCAGTGCTTTAGATATTGCGGATTGACATCATCAATGACGTTGTAATCCACATTGTTTGAGTAAACCCTAGAATTTAAATCTAAGTGTCCACACAAATAATTATGTGGGCCCAGAGCACGCGCCCACATCGTCTTCCCCGTCCGACTATCACCCTCGACGATTATACTAATAGGTCGTTCCGGCCGCGCAGCGGAACTCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGCCCATGGTTCCGGAGGCTTCTGAAATATCCGTTCTAGATTTGATCGGATGTTATGATGTTGAAGGACGAAGTCTTTTGGTTGTTCTTCCTTCAGTATATTGAGCGCCTCCAAGATGGATCCAGCGTTGAGGACCTTGGCATACGTATCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTGTTTCTCCACATAGGTTTTGACGTCCGATGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGAGATACAAGATCGAAGAATCTTTGATTTGTGCAGACGTATTTTCCTTCGAACTGGATGAGCACATGGAGATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAACCCTAATGAATTTCTTGTTGACAGGAGTCCCTAGGGCTTGCAATTGGGATAGGGCTTCTTCTTTAGAAAGGGAACAATGTGGGTAAGTGAGGAAGAAATTCTTGGATTGGACTCTAAAACGCTTCGGAGCTGATGGCATTTTTGTAATAATGGGGATGTCTCCAATTGGAGCTCTCGCAAAGTATTCAAATGAATTGGAGACTGGAGTACAATATATACAAGTGCCCTTAATCTTGAAAATCTCCACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_010087636.1
Location 286-1041
Gene Name AV1
Protein Name capsid protein
Coding Region ATGCCGAAGCGGGATGGTTCATGGCGTTCGATCGAGGGAACGTCGAAGGTTAGGCGCTCCCTCAATTTTTCGCCCCGTGGAGGTACGGGCTTTAAAGTTAATAAATCACAGGCCTGGGTTAATAGGCCCATGTACAGGAAGCCCAGGATCTATCGGGCTTTCAGATCGCCTGATGTTCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCGTACGAGCAACGCCATGATATCGCTCATACTGGGAAGGTGATATGCATCTCCGACGTGACGCGTGGCAATGGCATCACTCACCGTGTCGGTAAGCGTTTCTGTGTGAAGTCTGTCTATATCTTAGGTAAGATATGGATGGATGACAATATCAAGCTGAGGAACCACACGAACAACGTGATGTTCTGGCTGGTGAGAGACCGGAGACCGTATGGTACCCCCATGGATTTCGGACAGGTGTTTAACTTGTTCGACAACGAGCCAAGCACCGCCACCGTGAAGAACGATCTCCGTGATCGTTTCCAAGTGATGCACAAGTTCCACACCACGGTCACGGGTGGTCAGTATGCTGCCAAGGAGCAGGCCCTGGTTAAGCGGTTCTGGAAGGTCAACAACCATGTGACCTATAACCATCAGGAGGCTGCTAAGTACGAGAACCACACTGAGAACGCCCTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCTGTGTATGCTACATTGAAGATTCGGATCTATTTTTATGATTCGACTTCAAATTAA
Protein Sequence MPKRDGSWRSIEGTSKVRRSLNFSPRGGTGFKVNKSQAWVNRPMYRKPRIYRAFRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKNDLRDRFQVMHKFHTTVTGGQYAAKEQALVKRFWKVNNHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSTSN

NCBI Accession YP_010087637.1
Location 1038-1436
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAATTCATCACTGCGCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTGTATTTCAAAATAACCAGGGTGGAAGACCCCCTATACACGAACGCCAGAGTGTACCACATCCAGATCCGGTTCAACCACAACTTGAGGAAGGAGCTGGGTCTTCACAAAGCCTTCTTGAACTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAGACTTAGACATTTAGTTTTATTGTATTTAGATCAATTAGGTGTTATTTCAATTAATAATGTAATTAGAGCTGTTCGTTTCGCAACAGATAAAGCATATGTAACTTATGTACTCGAACATCATTCAATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGEFITAPQAENGVYIWEITNPLYFKITRVEDPLYTNARVYHIQIRFNHNLRKELGLHKAFLNFQVWTTSVTASGTTYLNRLRHLVLLYLDQLGVISINNVIRAVRFATDKAYVTYVLEHHSIKFKLY

NCBI Accession YP_010087638.1
Location 1183-1572
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGGTAGCACACAGAGCGGCCAAGCGCAGGGCAATTCGCCGTAGACGAATCGACATCGATTGCGGCTGCTCTTTCTTCAGGCACATCAACTGCGCCAATCATGGATTCACGCACAGGGGAATTCATCACTGCGCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTGTATTTCAAAATAACCAGGGTGGAAGACCCCCTATACACGAACGCCAGAGTGTACCACATCCAGATCCGGTTCAACCACAACTTGAGGAAGGAGCTGGGTCTTCACAAAGCCTTCTTGAACTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAG
Protein Sequence MLNSSSSTPPSIKVAHRAAKRRAIRRRRIDIDCGCSFFRHINCANHGFTHRGIHHCASSREWRVYLGDNKSPVFQNNQGGRPPIHERQSVPHPDPVQPQLEEGAGSSQSLLELPGLDDISDSFWDDIFK

NCBI Accession YP_010087639.1
Location 1493-2566
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCATCAGCTCCGAAGCGTTTTAGAGTCCAATCCAAGAATTTCTTCCTCACTTACCCACATTGTTCCCTTTCTAAAGAAGAAGCCCTATCCCAATTGCAAGCCCTAGGGACTCCTGTCAACAAGAAATTCATTAGGGTTTGCAGAGAACTCCATGAGAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAAGGAAAATACGTCTGCACAAATCAAAGATTCTTCGATCTTGTATCTCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCATCGGACGTCAAAACCTATGTGGAGAAACACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGATACGTATGCCAAGGTCCTCAACGCTGGATCCATCTTGGAGGCGCTCAATATACTGAAGGAAGAACAACCAAAAGACTTCGTCCTTCAACATCATAACATCCGATCAAATCTAGAACGGATATTTCAGAAGCCTCCGGAACCATGGGCTCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCGGACGATTATTTTGGGAGGAGTTCCGCTGCGCGGCCGGAACGACCTATTAGTATAATCGTCGAGGGTGATAGTCGGACGGGGAAGACGATGTGGGCGCGTGCTCTGGGCCCACATAATTATTTGTGTGGACACTTAGATTTAAATTCTAGGGTTTACTCAAACAATGTGGATTACAACGTCATTGATGATGTCAATCCGCAATATCTAAAGCACTGGAAAGAGATAATTGGGGCCCAAAGAGACTGGCAGTCAAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTATGCAATCCAGGAGCGGGTTCCAGCTATAAAGCATTCCTAGACAAAGAGGAAAATGCATCTTTAAGAGCCTGGACACTCCACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAGGTAGCACACAGAGCGGCCAAGCGCAGGGCAATTCGCCGTAG
Protein Sequence MPSAPKRFRVQSKNFFLTYPHCSLSKEEALSQLQALGTPVNKKFIRVCRELHENGEPHLHVLIQFEGKYVCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYVEKHGDFIDFGVFQIDGRSARGGQQSANDTYAKVLNAGSILEALNILKEEQPKDFVLQHHNIRSNLERIFQKPPEPWAPPFPLSSFTNVPDEMQEWADDYFGRSSAARPERPISIIVEGDSRTGKTMWARALGPHNYLCGHLDLNSRVYSNNVDYNVIDDVNPQYLKHWKEIIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGAGSSYKAFLDKEENASLRAWTLHNAKFIFLDSPLYQGSTQSGQAQGNSP

NCBI Accession YP_010087640.1
Location 2113-2412
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAGAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAAGGAAAATACGTCTGCACAAATCAAAGATTCTTCGATCTTGTATCTCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCATCGGACGTCAAAACCTATGTGGAGAAACACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGATACGTATGCCAAGGTCCTCAACGCTGGATCCATCTTGGAGGCGCTCAATATACTGA
Protein Sequence MRMGSLISMCSSSSKENTSAQIKDSSILYLQPGQHISIRTFRELRAHRTSKPMWRNTETSLILEFSKSMADQLEEVSNLPTIRMPRSSTLDPSWRRSIY

References More References in PubMed

1

Tomato severe rugose virus: Another Begomovirus Causing Leaf Deformation and Mosaic Symptoms on Potato in Brazil.

Souza-Dias JAC, et al.  Plant Dis. 2008 Mar;92(3):487. doi: 10.1094/PDIS-92-3-0487C.

PMID: 30769698
2

Infection of tomato leaf curl New Delhi virus (ToLCNDV), a bipartite begomovirus with betasatellites, results in enhanced level of helper virus components and antagonistic interaction between DNA B and betasatellites.

Jyothsna P, et al.  Appl Microbiol Biotechnol. 2013 Jun;97(12):5457-71. doi: 10.1007/s00253-012-4685-9. Epub 2013 Jan 10.

PMID: 23306645
3

Pest categorisation of non-EU viruses and viroids of Vitis L.

EFSA Panel on Plant Health (EFSA PLH Panel), et al.  EFSA J. 2019 Sep 30;17(9):e05669. doi: 10.2903/j.efsa.2019.5669. eCollection 2019 Sep.

PMID: 32626420
4

Host recovery and reduced virus level in the upper leaves after Potato virus Y infection occur in tobacco and tomato but not in potato plants.

Nie X, et al.  Viruses. 2015 Feb 11;7(2):680-98. doi: 10.3390/v7020680.

PMID: 25679498
5

First Report of Alfalfa mosaic virus Infecting Tedera (Bituminaria bituminosa (L.) C.H. Stirton var. albomarginata and crassiuscula) in Australia.

Jones RAC, et al.  Plant Dis. 2012 Sep;96(9):1384. doi: 10.1094/PDIS-04-12-0378-PDN.

PMID: 30727195
6

First Report of a Tobamovirus in Dieffenbachia and Impatiens.

Rivas EB, et al.  Plant Dis. 2000 Jun;84(6):707. doi: 10.1094/PDIS.2000.84.6.707A.

PMID: 30841123
7

Subgroup Determination of Bulgarian Isolates of Cucumber Mosaic Virus and the Presence of Satellite RNAs.

Mavrodieva VA, et al.  Plant Dis. 1998 Aug;82(8):960. doi: 10.1094/PDIS.1998.82.8.960C.

PMID: 30856936