Tomato twisted leaf virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_013088455.1
Isolate Venezuela
Release date 2021/6/1
Submitter Romay,G., Geraud-Pouey,F., Chirinos,D.T., Mahillon,M., Gillis,A., Mahillon,J., Bragard,C.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055524
ACCGGATGGCCGCGCGATTTTGTGGAGTCCCCGCTTTTCTGTGATTATTATTTGAATTAAAGTGTTTTACTTTCATGTGGACCAATGAGAGAGCGTCTGTGGAGCCTAGATATTATGACTTGGTCCCTAAGTTGTGGGCCTATAAAAGAAATGACGCTCTCTCTCTGTCACTTTAATTCGAAATGCCTAAGCGGGATGCCCCATGGCGCACTATTGCGGGGACCTCAAAGGTCTCTCGCTCTTCTACTCAGTCGCCTCGTGGTGGTATGGGCCCTAAGGCAACTGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGAACTTGGAGATCACCTGACGTCCCCAAGGGATGTGAAGGCCCATGTAAGGTTCAGTCTTTTGAGCAGCGTCACGATATCTCTCATGTTGGGAAGGTGATCTGTATATCCGATGTTACTCGTGGTCCTGGTATCACTCACCGTGTTGGGAAACGTTTCTGCGTGAAGTCAGTCTACATTCTAGGCAAGATATGGATGGACGAGAACATCAAACTTAAGAACCACACTAACAGCGTCATGTTCTGGTTAGTTAGGGACAGGAGACCATATGGCACCCCCATGGATTTTGGCCAAGTTTTCAACATGTACGACAACGAGCCCAGTACTGCCACTGTGAAGAACGATCTCCGTGATCGTTTCCAAGTTATGCACAGGTTCTACGCTAAGGTTACCGGTGGTCAGTATGCTAGCAACGAGCAGGCTCTAGTCAGGCGATTTTGGAAGGTCCACAACCATGTGGTCTACAACCATCAGGAAGCTGGGAAGTACGAGAATCACACTGAGAACGCCCTATTATTGTATATGGCATGCACTCATGCCTCTAACCCTGTATATGCTACGTTGAAAATACGTAGCTATTTTTATGACTCGATCAGCAATTAATAAAAGTTGAATTTTATTTCATGATTCTCGTGTACATAATTTACATATGATTTGTCCGTTGCGAAACGAACTGCACGTATTACATTATTAATTCCGATAACACCTATCCTATCTAAATACAATAAAACTAAATATCTAAATCTATTTAAATATGTCGTCCCAGAAGCTCGAACTGATGTCGTCCAGACTTGGAAGTTCAGGAAAGCTTTGTGAAGATTCAACGCCCTCCTGAGGTTGTGGTTGAACCGGATCTGGATGTGGTAAATCCTGAGCGACGTGTGAATTGGATCCTCTACTTGTTGAATCTTGAAATAAAGGGGATTTGGAACCTCCCAGATAAAAACGGAACTCTCTGCCTGACGCACAGTGATGTTCTCCCCGGTGCGTGAATCCATTATTAGAGCAGTTGATGTGCATGAAGATTGAACAGCCGCAGTTCAAGTCAATGCGTCTCCGTCTGAGTGCCCTCTTCTTGGCGATTCTGTGCTGTGCCTTGATAGAGGGGGGCGTCGAGGAAGATGAATTTAGCATTCTTAAGCGTCCACGCCCTCAGAGCTGCATTTTCCTCTTTGTCGAGGAATTCTTTATAGCTGCTCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTTGACTGCCAGTCCTTTTGAGCGCCAATTAACTCCTTCCAATGCTTTAACTTTAGATAATGCGGAGTTATGTCATCAATGACGTTATACTCCACTTCATTTGAATAGACCCTTGCATTGAAATCTAAATGACCGCTCAAATAATTGTGGGACCCCAATGCACGTGCCCACATGGTCTTCCCTGTACGACTATCACCTTCGACGATGATACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTCCTCCCAAAGTAATCATCAGCCCACTCTTGCATCTCCTCCGGTACGTTAGTGAAAGAGGAGAGTTGAAACGGAGGAACCCATGGTTCTGGAGCCTTTTGAAAAAGACGTTCTAAATTCGATTTTATGTTATGGTAACTGACTATGAACGTCTTTGGATCTCCTGCACGGATAATGTCGATAGCTTCTCCCACACTAGATGCATGGACGGCGTTGTGATACACGTCGTCTTTATTTGACTTTGTTCCGCCAGACACTTTGTATTGTCCGGATTCACAATAATCACCCTCCTTGGTGATGTAGTTCTTGACGGCATTGGCGTCTTTGGCTGCCTGGACATTTGGGTGAAAAGTGGAAGACCTTCTGGGGTGAGTAAGGTCGAAAAACCTAGCATCCTTGATGTTTGACTTGCCGGAGAGCTGGATGAGACAGTGGAGATGTGGGAGACCGTCGGAGTGTTCCTCTCTTGCGACTCTGATGTAGGTTGGTTTGACGATTGACCATGAGAGTGCTTGAAGCATCTCAATAGCCTCATCTTTGGATATGTCGCACTGGGGATATGTTAAAAAGATATTTCTGGCTTGTAAGCGAAATGAATTAGGGTTTCGTGGCATATTTGTAAATATGAGAGGGGACTCCAGCTGAGGACTCCAGGGAGAGCTCTCAACTTCTGTGCTATATGCTGGAGTCCTGGAGTCCCATTTATACTAGAAGTCTCTGGGGTTAGATCAGCCACGTGGCGGCCATCCGCAATAATATT

Gene Information

NCBI Accession YP_010087241.1
Location 85-426
Protein Name hypothetical protein
Coding Region ATGAGAGAGCGTCTGTGGAGCCTAGATATTATGACTTGGTCCCTAAGTTGTGGGCCTATAAAAGAAATGACGCTCTCTCTCTGTCACTTTAATTCGAAATGCCTAAGCGGGATGCCCCATGGCGCACTATTGCGGGGACCTCAAAGGTCTCTCGCTCTTCTACTCAGTCGCCTCGTGGTGGTATGGGCCCTAAGGCAACTGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGAACTTGGAGATCACCTGACGTCCCCAAGGGATGTGAAGGCCCATGTAAGGTTCAGTCTTTTGAGCAGCGTCACGATATCTCTCATGTTGGGAAGGTGA
Protein Sequence MRERLWSLDIMTWSLSCGPIKEMTLSLCHFNSKCLSGMPHGALLRGPQRSLALLLSRLVVVWALRQLLGLTGPCTGSPGSTELGDHLTSPRDVKAHVRFSLLSSVTISLMLGR

NCBI Accession YP_010087242.1
Location 183-929
Gene Name V1
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATGCCCCATGGCGCACTATTGCGGGGACCTCAAAGGTCTCTCGCTCTTCTACTCAGTCGCCTCGTGGTGGTATGGGCCCTAAGGCAACTGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGAACTTGGAGATCACCTGACGTCCCCAAGGGATGTGAAGGCCCATGTAAGGTTCAGTCTTTTGAGCAGCGTCACGATATCTCTCATGTTGGGAAGGTGATCTGTATATCCGATGTTACTCGTGGTCCTGGTATCACTCACCGTGTTGGGAAACGTTTCTGCGTGAAGTCAGTCTACATTCTAGGCAAGATATGGATGGACGAGAACATCAAACTTAAGAACCACACTAACAGCGTCATGTTCTGGTTAGTTAGGGACAGGAGACCATATGGCACCCCCATGGATTTTGGCCAAGTTTTCAACATGTACGACAACGAGCCCAGTACTGCCACTGTGAAGAACGATCTCCGTGATCGTTTCCAAGTTATGCACAGGTTCTACGCTAAGGTTACCGGTGGTCAGTATGCTAGCAACGAGCAGGCTCTAGTCAGGCGATTTTGGAAGGTCCACAACCATGTGGTCTACAACCATCAGGAAGCTGGGAAGTACGAGAATCACACTGAGAACGCCCTATTATTGTATATGGCATGCACTCATGCCTCTAACCCTGTATATGCTACGTTGAAAATACGTAGCTATTTTTATGACTCGATCAGCAATTAA
Protein Sequence MPKRDAPWRTIAGTSKVSRSSTQSPRGGMGPKATAWVNRPMYRKPRIYRTWRSPDVPKGCEGPCKVQSFEQRHDISHVGKVICISDVTRGPGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVHNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRSYFYDSISN

NCBI Accession YP_010087243.1
Location 926-1324
Gene Name C3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACCGGGGAGAACATCACTGTGCGTCAGGCAGAGAGTTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATTCAACAAGTAGAGGATCCAATTCACACGTCGCTCAGGATTTACCACATCCAGATCCGGTTCAACCACAACCTCAGGAGGGCGTTGAATCTTCACAAAGCTTTCCTGAACTTCCAAGTCTGGACGACATCAGTTCGAGCTTCTGGGACGACATATTTAAATAGATTTAGATATTTAGTTTTATTGTATTTAGATAGGATAGGTGTTATCGGAATTAATAATGTAATACGTGCAGTTCGTTTCGCAACGGACAAATCATATGTAAATTATGTACACGAGAATCATGAAATAAAATTCAACTTTTATTAA
Protein Sequence MDSRTGENITVRQAESSVFIWEVPNPLYFKIQQVEDPIHTSLRIYHIQIRFNHNLRRALNLHKAFLNFQVWTTSVRASGTTYLNRFRYLVLLYLDRIGVIGINNVIRAVRFATDKSYVNYVHENHEIKFNFY

NCBI Accession YP_010087244.1
Location 1071-1460
Gene Name C2
Protein Name transcriptional activator protein
Coding Region ATGCTAAATTCATCTTCCTCGACGCCCCCCTCTATCAAGGCACAGCACAGAATCGCCAAGAAGAGGGCACTCAGACGGAGACGCATTGACTTGAACTGCGGCTGTTCAATCTTCATGCACATCAACTGCTCTAATAATGGATTCACGCACCGGGGAGAACATCACTGTGCGTCAGGCAGAGAGTTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAAGATTCAACAAGTAGAGGATCCAATTCACACGTCGCTCAGGATTTACCACATCCAGATCCGGTTCAACCACAACCTCAGGAGGGCGTTGAATCTTCACAAAGCTTTCCTGAACTTCCAAGTCTGGACGACATCAGTTCGAGCTTCTGGGACGACATATTTAAATAG
Protein Sequence MLNSSSSTPPSIKAQHRIAKKRALRRRRIDLNCGCSIFMHINCSNNGFTHRGEHHCASGREFRFYLGGSKSPLFQDSTSRGSNSHVAQDLPHPDPVQPQPQEGVESSQSFPELPSLDDISSSFWDDIFK

NCBI Accession YP_010087245.1
Location 1372-2451
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCACGAAACCCTAATTCATTTCGCTTACAAGCCAGAAATATCTTTTTAACATATCCCCAGTGCGACATATCCAAAGATGAGGCTATTGAGATGCTTCAAGCACTCTCATGGTCAATCGTCAAACCAACCTACATCAGAGTCGCAAGAGAGGAACACTCCGACGGTCTCCCACATCTCCACTGTCTCATCCAGCTCTCCGGCAAGTCAAACATCAAGGATGCTAGGTTTTTCGACCTTACTCACCCCAGAAGGTCTTCCACTTTTCACCCAAATGTCCAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAGGAGGGTGATTATTGTGAATCCGGACAATACAAAGTGTCTGGCGGAACAAAGTCAAATAAAGACGACGTGTATCACAACGCCGTCCATGCATCTAGTGTGGGAGAAGCTATCGACATTATCCGTGCAGGAGATCCAAAGACGTTCATAGTCAGTTACCATAACATAAAATCGAATTTAGAACGTCTTTTTCAAAAGGCTCCAGAACCATGGGTTCCTCCGTTTCAACTCTCCTCTTTCACTAACGTACCGGAGGAGATGCAAGAGTGGGCTGATGATTACTTTGGGAGGAGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTATCATCGTCGAAGGTGATAGTCGTACAGGGAAGACCATGTGGGCACGTGCATTGGGGTCCCACAATTATTTGAGCGGTCATTTAGATTTCAATGCAAGGGTCTATTCAAATGAAGTGGAGTATAACGTCATTGATGACATAACTCCGCATTATCTAAAGTTAAAGCATTGGAAGGAGTTAATTGGCGCTCAAAAGGACTGGCAGTCAAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGTATCCCATCAATCGTGCTGTGCAATCCAGGAGAGGGGAGCAGCTATAAAGAATTCCTCGACAAAGAGGAAAATGCAGCTCTGAGGGCGTGGACGCTTAAGAATGCTAAATTCATCTTCCTCGACGCCCCCCTCTATCAAGGCACAGCACAGAATCGCCAAGAAGAGGGCACTCAGACGGAGACGCATTGA
Protein Sequence MPRNPNSFRLQARNIFLTYPQCDISKDEAIEMLQALSWSIVKPTYIRVAREEHSDGLPHLHCLIQLSGKSNIKDARFFDLTHPRRSSTFHPNVQAAKDANAVKNYITKEGDYCESGQYKVSGGTKSNKDDVYHNAVHASSVGEAIDIIRAGDPKTFIVSYHNIKSNLERLFQKAPEPWVPPFQLSSFTNVPEEMQEWADDYFGRSSAARPERPISIIVEGDSRTGKTMWARALGSHNYLSGHLDFNARVYSNEVEYNVIDDITPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKEFLDKEENAALRAWTLKNAKFIFLDAPLYQGTAQNRQEEGTQTETH

NCBI Accession YP_010087246.1
Location 1980-2372
Gene Name C4
Protein Name C4 protein
Coding Region ATGAGGCTATTGAGATGCTTCAAGCACTCTCATGGTCAATCGTCAAACCAACCTACATCAGAGTCGCAAGAGAGGAACACTCCGACGGTCTCCCACATCTCCACTGTCTCATCCAGCTCTCCGGCAAGTCAAACATCAAGGATGCTAGGTTTTTCGACCTTACTCACCCCAGAAGGTCTTCCACTTTTCACCCAAATGTCCAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAGGAGGGTGATTATTGTGAATCCGGACAATACAAAGTGTCTGGCGGAACAAAGTCAAATAAAGACGACGTGTATCACAACGCCGTCCATGCATCTAGTGTGGGAGAAGCTATCGACATTATCCGTGCAGGAGATCCAAAGACGTTCATAG
Protein Sequence MRLLRCFKHSHGQSSNQPTSESQERNTPTVSHISTVSSSSPASQTSRMLGFSTLLTPEGLPLFTQMSRQPKTPMPSRTTSPRRVIIVNPDNTKCLAEQSQIKTTCITTPSMHLVWEKLSTLSVQEIQRRS

References More References in PubMed

1

Tomato Twisted Leaf Virus: A Novel Indigenous New World Monopartite Begomovirus Infecting Tomato in Venezuela.

Romay G, et al.  Viruses. 2019 Apr 4;11(4):327. doi: 10.3390/v11040327.

PMID: 30987360

2

First Report of Tomato Yellow Leaf Curl Virus Infecting Pepper and Tomato in Oklahoma.

Paslay C, et al.  Plant Dis. 2022 Aug 12. doi: 10.1094/PDIS-04-22-0927-PDN. Online ahead of print.

PMID: 35961018

3

An anomalous detection of Tomato yellow leaf curl virus in tomato in New York State.

Perry KL.  Plant Dis. 2021 Apr 28. doi: 10.1094/PDIS-02-21-0356-PDN. Online ahead of print.

PMID: 33908793

4

Spinach latent virus Infecting Tomato in Virginia, United States.

Vargas-Asencio J, et al.  Plant Dis. 2013 Dec;97(12):1663. doi: 10.1094/PDIS-05-13-0529-PDN.

PMID: 30716862

5

Association of tomato leaf curl New Delhi virus DNA-B with bhendi yellow vein mosaic virus in okra showing yellow vein mosaic disease symptoms.

Venkataravanappa V, et al.  Acta Virol. 2015 Jun;59(2):125-39. doi: 10.4149/av_2015_02_125.

PMID: 26104329

6

Pest categorisation of non-EU viruses and viroids of Prunus L.

EFSA Panel on Plant Health (PLH), et al.  EFSA J. 2019 Sep 30;17(9):e05735. doi: 10.2903/j.efsa.2019.5735. eCollection 2019 Sep.

PMID: 32626421

7

Molecular characterization of novel bipartite begomovirus associated with enation leaf disease of Garden croton (Codiaeum variegatum L.).

Venkataravanappa V, et al.  Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1.

PMID: 35991698

8

Leaf Curl Disease of Carica papaya from India May Be Caused by a Bipartite Geminivirus.

Saxena S, et al.  Plant Dis. 1998 Jan;82(1):126. doi: 10.1094/PDIS.1998.82.1.126A.

PMID: 30857046

9

Effects of a Potato Spindle Tuber Viroid Tomato Strain on the Symptoms, Biomass, and Yields of Classical Indicator and Currently Grown Potato and Tomato Cultivars.

Mackie AE, et al.  Plant Dis. 2019 Dec;103(12):3009-3017. doi: 10.1094/PDIS-02-19-0312-RE. Epub 2019 Sep 25.

PMID: 31567060

10

First Report of a Phytoplasma Affecting Tomato in Poland.

Pospieszny H, et al.  Plant Dis. 2007 Aug;91(8):1054. doi: 10.1094/PDIS-91-8-1054B.

PMID: 30780451