Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000874065.1 |
Isolate | Brazil |
Release date | 2015/2/13 |
Submitter | Bezerra-Agasie,I.C., Ferreira,G.B., Avila,A.C., Inoue-Nagata,A.K., Hallwass,M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_001294919.1 |
---|---|
Location | 171-926 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGTGATGCCCCATGGCGTTTAACGGCGGGAACTTCAAAGGTTTCCCGCTCTGTCAATTATTCTCCCCGTGCAGGATATGGACCCAAATATAATAAGGCCGCTGAGTGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGTACTTTGAGAGGCCCAGATGTTCCTAGAGGCTGTGAAGGGCCTTGTAAGGTTCAGTCTTACGAGTCTCGTCATGATGTTTCCCATGTCGGGAAGGTGATTTGTGTGTCTGACGTTACACGTGGTAACGGTATTACTCACCGTGTTGGTAAGCGTTTCTGCGTGAAGTCTGTATATATTTTAGGGAAGGTATGGATGGACGAGAGCATCAAGTTGAAGAATCACACAAATAGTGTGATGTTCTGGTTGGTTAGAGATCGGAGACCTTATTCGACACCTATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTTAAGAACGATCTTCGGGATCGTTTTCAGGTCATGCACAAGTTTTATGCCAAGGTTACTGGTGGACAGTATGCCAGTAATGAGCAGGCATTAGTGAAGCGCTTTTGGAAGGTCAACAACAACGTAGTCTACAACCATCAGGAGGCAGGGAAATACGAGAATCATACTGAGAACGCCTTGCTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACATTGAAAATTCGGATCTATTTTTATGATTCGATTACTAATTAA |
Protein Sequence | MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMYRKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRFCVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_001294920.1 |
---|---|
Location | 923-1321 |
Gene Name | AC3 |
Protein Name | AC3 protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTTTATATTTGGGAGATATCAAATCCCCTCTATTTCAAGATAAACAGAGTGGAGGATCCAATGTACACCGCGAGCAGAGTCTACCACGTCCAAATACGGTTCAACCACAACCTGAGGAGAGCATTGCATCTCCACAAGAGCTTCCTCAACTTCCAGATATGGACGACTTCACTGACAGCTTCTGGGACGACATATTTAACTAGATTTAAATATTTAGTCTTATTGTATCTAGATCGATTAGGCGTTATTTCCATTAATAATGTAATCAGAGCTGTTCGTTTTGCAACAGACAAATCATATGTAAATGCTGTACTCGAAAATCATTCAATAAAATTTAAATTTTATTAA |
Protein Sequence | MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVYHVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINNVIRAVRFATDKSYVNAVLENHSIKFKFY |
NCBI Accession | YP_001294921.1 |
---|---|
Location | 1068-1457 |
Gene Name | AC2 |
Protein Name | TrAP |
Coding Region | ATGCGAAATTCGTCTTCCTTAACACCCCCCTCTATCAAGGTACAACACAGAGTTGCTAAAAAACGAGGAATCAGGAGACGACGAATTGATATAGAGTGCGGGTGCTCTATTTACGTACACATCGACTGCAGAGGACATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTTTATATTTGGGAGATATCAAATCCCCTCTATTTCAAGATAAACAGAGTGGAGGATCCAATGTACACCGCGAGCAGAGTCTACCACGTCCAAATACGGTTCAACCACAACCTGAGGAGAGCATTGCATCTCCACAAGAGCTTCCTCAACTTCCAGATATGGACGACTTCACTGACAGCTTCTGGGACGACATATTTAACTAG |
Protein Sequence | MRNSSSLTPPSIKVQHRVAKKRGIRRRRIDIECGCSIYVHIDCRGHGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESIASPQELPQLPDMDDFTDSFWDDIFN |
NCBI Accession | YP_001294922.1 |
---|---|
Location | 1399-2457 |
Gene Name | Rep |
Protein Name | Rep |
Coding Region | ATGCCATCAGCTCCAAAGCGCTTTCAAATAAAAGCGAAGAATTATTTCCTCACATATCCCAAATGCTCATTATCGAAAGAAGAAGCACTTTCCCAATTAAAAACCCTAAACACTCCTACAAATAAGAAGTTCATCAAGGTTTGCAGAGAGCTCCATGAAAATGGGGAGCCTCATCTCCACGTGCTTCTTCAATTTGAGGGCAACTACTGCTGCCAAAATCAACGATTCTTCGACCTGGTCTCCCCAACAAGGTCAACACATTTCCATCCGAACATTCAGAGAGCTAAGTCATCGTCCGACGTCAAATCCTATGTCGATAAGGACGGAGATACTATCGAGTGGGGGGAATTCCAAATCGACGGAAGAAGTGCTAGAGGCGGTTGCCAGACAGCTAACGACGCTGCCGCAGAAGCCTTGAACGCACCTTCCAAAGACGTCGCCTTGCAGATAATCCGTGAGAAGCTGCCTGAAAAGTTCTTATTTCAGTTTCACAATCTAAATAGTAATTTAGATAGGATATTTACAAGGGCTCCGGAGCCATGGGCCCCTACGTTTCCCCTCTCCTCTTTCACTAGCGTACCGAGAGAGATGCAAGCTTGGGCAGATGACTCTTTTGGGAGAGGTGCCGCTGCGCGGCCGGAACGACCTATTAGTATCATCATTGAAGGTGATTCTCGAACGGGAAAGACGATGTGGGCACGTGCATTAGGGGCCCATAATTATTTGAGTGGACACCTAGATTTCAATCCTAGGGTTTATTCAAATCATGTTGAATATAACGTCATTGATGACATCGCACCGCACTATCTAAAGTTAAAGCACTGGAAAGAATTGCTTGGGGCCCAAAAGGATTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGTGGTATCCCATGCATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGCTATAAATGTTTCCTCGACAAAGAAGAAAATGCAAGTCTAAATAATTGGACAAAGCACAATGCGAAATTCGTCTTCCTTAACACCCCCCTCTATCAAGGTACAACACAGAGTTGCTAA |
Protein Sequence | MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFIKVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSYVDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQFHNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDSFGRGAAARPERPISIIIEGDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFLNTPLYQGTTQSC |
NCBI Accession | YP_001294923.1 |
---|---|
Location | 2040-2303 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGAAAATGGGGAGCCTCATCTCCACGTGCTTCTTCAATTTGAGGGCAACTACTGCTGCCAAAATCAACGATTCTTCGACCTGGTCTCCCCAACAAGGTCAACACATTTCCATCCGAACATTCAGAGAGCTAAGTCATCGTCCGACGTCAAATCCTATGTCGATAAGGACGGAGATACTATCGAGTGGGGGGAATTCCAAATCGACGGAAGAAGTGCTAGAGGCGGTTGCCAGACAGCTAACGACGCTGCCGCAGAAGCCTTGA |
Protein Sequence | MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELSHRPTSNPMSIRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP |
NCBI Accession | YP_001294933.1 |
---|---|
Location | 410-1180 |
Gene Name | BV1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGTATCCCATTAAGTATAGACGTGGAATGTTGTTTAATCATCGACGAGGTTACTCATCTAATCCCGTATTTAAGCGTTTACACGGAACGAAACGAAGTGATATCAAGCGTCGTTCGAGTAATCAGATTAAGAGTATGGATGAGACTAAAATGTCTGTTCAGCGGATTCATGAGAACCAGTTTGGCCCTGAATTTGTAATTGGCCACAATTCTGCCATATCCACATTCATTACATTCCCTACTCTTTGTAAGACTGTCCCGAACCGTTGTAGGTCATACATAAAGTTAAGACGACTACGTTTTAAAGGAACAATCAAGATTGACCGTGTTCATGCTGAGGTGAATATGGACGGTACAAGTCCAATGATTGAAGGAGTCTTCTCTCTGGTTGTAGTCGTTGATCGCAAACCTCATTTGGGCTCATCTGGAACTCTGCATTCTTTTGATGAGATATTTGGTGCAAGGATTCATAGCCATGGTAACCTGGCAATAGTATCCTCTCTGAAAGAGCGTTTTTACATACGTCACGTTTGGAAGAAAGTAATATCTGTTGAGAAGGATACAACCATGGTTGATGTTGAAGGAAGTACTGTTTTATCTAACAGGCGTTTTAATTGTTGGTCATCCTTTAAGGATATTGACCGTGAATCATGTAATGGTGTTTATGCAAACATAAGCAAGAACGCCCTGTTAGTTTATTACTGTTGGATGTCTGATAATGTGTCTAAGGCATCGACATTTGTATCATTTGACCTTGATTATGTTGGCTAA |
Protein Sequence | MYPIKYRRGMLFNHRRGYSSNPVFKRLHGTKRSDIKRRSSNQIKSMDETKMSVQRIHENQFGPEFVIGHNSAISTFITFPTLCKTVPNRCRSYIKLRRLRFKGTIKIDRVHAEVNMDGTSPMIEGVFSLVVVVDRKPHLGSSGTLHSFDEIFGARIHSHGNLAIVSSLKERFYIRHVWKKVISVEKDTTMVDVEGSTVLSNRRFNCWSSFKDIDRESCNGVYANISKNALLVYYCWMSDNVSKASTFVSFDLDYVG |
NCBI Accession | YP_001294934.1 |
---|---|
Location | 1306-2187 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGGAATCTCAGCTTGTAAATCCTCCCAACGCATTTAATTATATAGAATCTAAGCGTGATGAATATCAGCTTTCCCATGATCTAACCGAGATTATGCTTCAATTCCCTTCAACGGCGTCTCAATTAAGCGCAAGGCTTAGTCGTAGCTGTATGAAAATCGACCATTGCGTAATAGAATACAGACAACAGGTACCAATTAACGCCGTAGGTTCAGTTATAGTCGAAATTCATGACAGAAGAATGACGGACAATGAATCACTACAGGCGTCTTGGACCTTTCCTATCAGATGTAACATAGATCTTCACTACTTTTCGTCGTCGTTCTTCTCCCTTAAGGACCCAATTCCATGGAAATTGTACTACAGAGTATGTGACACGAACGTTCACCAGAGTACCCACTTCGCTAAATTCAAAGGGAGACTGAAACTCTCGACGGCTAAACATTCGGTTGATATACCTTTCCGTGCCCCAACGGTGAAGATTCTTTCAAAACAATTTACAGATAAGGACATTGATTTCAGTCACGTAGGCTATGGCAAATGGGAAAGGAAGATGATCAGATCCGCCTCAATATCAAGATTGGGCCTTCACAACCCACTTGAAATAATGCCCGGAGAGTCATGGGCTGTTAGAAGTACTGTAGGCATAAGCCCATCAGAGGCGGGCTCAGATATAGAGAACGCGATGCATCCATACAGACAATTACATAGATTGGGTACAGGCACATTAGACCCAGGTGATTCTGCGTCCATAATTGGTGCTCAAAGGGCCCAATCGAACATAACACTGTCAATGGCCCAATTAAACGAACTTGTTAAAGCAGCGGCCCATGAATGTATAAACAGCAACTGTACTCCTTCACAGCCAAAATCTTTAAAATAA |
Protein Sequence | MESQLVNPPNAFNYIESKRDEYQLSHDLTEIMLQFPSTASQLSARLSRSCMKIDHCVIEYRQQVPINAVGSVIVEIHDRRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVCDTNVHQSTHFAKFKGRLKLSTAKHSVDIPFRAPTVKILSKQFTDKDIDFSHVGYGKWERKMIRSASISRLGLHNPLEIMPGESWAVRSTVGISPSEAGSDIENAMHPYRQLHRLGTGTLDPGDSASIIGAQRAQSNITLSMAQLNELVKAAAHECINSNCTPSQPKSLK |
1 |
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2 |
Intra-host evolution of the ssDNA virus tomato severe rugose virus (ToSRV). Pinto VB, et al. Virus Res. 2021 Jan 15;292:198234. doi: 10.1016/j.virusres.2020.198234. Epub 2020 Nov 21. PMID: 33232784 |
3 |
Favara GM, et al. Plant Dis. 2023 Apr;107(4):1087-1095. doi: 10.1094/PDIS-10-21-2160-RE. Epub 2023 Apr 19. PMID: 36096104 |
4 |
Nogueira AM, et al. Viruses. 2023 Oct 11;15(10):2074. doi: 10.3390/v15102074. PMID: 37896851 |
5 |
Comparative Analysis of Tomato Brown Rugose Fruit Virus Isolates Shows Limited Genetic Diversity. Abrahamian P, et al. Viruses. 2022 Dec 17;14(12):2816. doi: 10.3390/v14122816. PMID: 36560820 |
6 |
Souza-Dias JAC, et al. Plant Dis. 2008 Mar;92(3):487. doi: 10.1094/PDIS-92-3-0487C. PMID: 30769698 |
7 |
Tomato Brown Rugose Fruit Virus Contributes to Enhanced Pepino Mosaic Virus Titers in Tomato Plants. Klap C, et al. Viruses. 2020 Aug 11;12(8):879. doi: 10.3390/v12080879. PMID: 32796777 |
8 |
Silva FN, et al. Virol J. 2014 Apr 5;11:66. doi: 10.1186/1743-422X-11-66. PMID: 24708727 |
9 |
First Report of Tomato severe rugose virus in Chili Pepper in Brazil. Bezerra-Agasie IC, et al. Plant Dis. 2006 Jan;90(1):114. doi: 10.1094/PD-90-0114C. PMID: 30786504 |
10 |
Sabra A, et al. Plants (Basel). 2022 Nov 18;11(22):3157. doi: 10.3390/plants11223157. PMID: 36432886 |