Tomato severe leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000845785.1
Isolate Guatemala:Sansirisay
Release date 2015/2/12
Submitter Nakhla,M.K., Maxwell,M.D., Hidayat,S.H., Lange,D.R., Loniello,A.O., Rojas,M.R., Maxwell,D.P., Kitajima,E.W., Rojas,A., Anderson,P., Gilbertson,R.L., Mejia,L., Ramirez,P., Karkashian,J.P., Doyle,M.M.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004642
ACCGGATGGCCGCGATTTTTTTTGGACCTGGCCCACTATCAGAAATTGCGTTGGGCCTTCCTGGATAAAGTTAACCAATCAGTACTCGTTTGGGTAGTCTAATTATTACTAACTTGGTCACCAAGTTGTTTTATGGTCTATAAATTTGTCGTTATGTGTGTGGTCCAACCACGTAAATATTGATAATGCCTAAGCGTGATGCCCCATGGCGCTTAATGGCGGGTACCCCTAAGGTGAGTCGGTCCTCCAACCAGTCTCCCCGGACTGGTACTGGGCCTAAATTTGATAAGGCCCATGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGCTTGGAGAACGCCCGACGTTCCAAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAACGACACGATATCTCCCACGTGGGGAAGGTCATGTGCATATCCGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGGTTTTGTGTTAAGTCTGTGTATATCCTCGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTAGTCAGGGACCGTAGACCCTATGGTACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTTGACAATGAGCCCAGCACTGCCACGGTCAAGACCGATCTACGCGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGATTCTGGAGGGTCAACAACCATGTGGTCTACAATCACCAAGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTATTGAATTAATAAAATTTGAATTTTATTGAATGATTTTCCAGTACATGAGATACATACGACCTGTTTGTCGCGAATCGTACAGCTCTGATAACATTGTTAATGCAAATAACACCTAACCTATCTAAATACAATAAGACTAAATATTTAAATCTACTTAAGTAAGTCGTCCCAGAAGCTTGAACTGATGTCGTCCAGATTTGGTAGTTGAGGTAGGCTTTGTGTAGACTCAGCGCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATGTGGTATATCCTGGTGTTGCTGTAAATTGGGTCCTCTACATTGATTATCGTGAAATAAAGGGGATTTGGTACCTCCCAGATAAAAACGGAATTCTCTGCCTGATCCGCAGTGATGCTCTCCCCTGTGCGTGAATCCATGGTTGGCGCAGTCGATGTGCTGGTAGAACGAGCAGCCACAGTTTAGGTCTATTCTCTTTCGACGAATCCTGGACTTTGCAATTTTGTGTTTAGGCTTGATAGAGGGTGGAGTTGAGGAAGATGAATTTTGCATTGTGGAGTGTCCAATCTTTTAGTGCTTTGTTTTCCTCTTTTTCGAGGAAACTTTTATAGCTGGCCCCCTCACCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTAATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGCTTCATCTTTAAATATTGCGGAGTGATGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAACCCTAGAATTGAAATCTAGGTGTCCACTCAAATAATTGTGTGGGCCTAAGGCACGCGCCCACATTGTCTTTCCCGTCCTCGATTCACCCTCGATGATTATACTTATAGGTCTCTCCGGCCGCGCAGCGGCATCCCTACCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAACGTTCGTGAACGACGAGAGTGGAAACGGAGGAACCCAGGGTTCCGGAGCCTTTTGAAAGAGCCGCTCGATGTTAGCTTTGACGTTATGGTAGCTTACAATGAACGTCTTTGGGTCTCCGGCCCTTATAATGTCGAGAGCCTCTCCAGCACTAGCTGCATTGACGGCGTTGTGGTAGACGTCGTCTTTGTTTGATTTTGTACCCCCAGACACCTTGTATTGTCCGGATTCACAATAATCACCTTCTTTGGTGATGTAATTCTGGACGGCGTTGGTGTCTTTGGCTGCCTGTGCGTTTGGATGAAAATTGGCAGACCTTCTGGGGTGAGTGAGGTCGAAAAATCTAGCATCCTTGATGTTGGACTTCCCGGAGAGTTGGATGAGACAGTGGAGGTGCGGAAATCCATCTGCGTGTTCCTCTCTGGCGACTCGTATGTACGTTGGTTTGACGACTGACCATGGCAGATTTTGAAGCATTTCAATAGCTTCATCTTTGGGGATATCACACTGTGGATATGTTAAGAAAATATTTTTGGCAGCTAGACGAAATAAATTAGGGTTCCGTGGCATTTTTGTAAATATGAGCCAGGACACCAGGGGGAGCTCTCTCTAAAACTTTATTTTGCTGGTGTCCTGGTGTCCCATTTATACTAAAACCCTCTTGGGGACACCAAGGGCAAATTCGGCCATCCGCAATAATATT

Gene Information

NCBI Accession NP_808780.1
Location 186-941
Gene Name cp
Protein Name capsid protein
Coding Region ATGCCTAAGCGTGATGCCCCATGGCGCTTAATGGCGGGTACCCCTAAGGTGAGTCGGTCCTCCAACCAGTCTCCCCGGACTGGTACTGGGCCTAAATTTGATAAGGCCCATGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGCTTGGAGAACGCCCGACGTTCCAAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAACGACACGATATCTCCCACGTGGGGAAGGTCATGTGCATATCCGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGGTTTTGTGTTAAGTCTGTGTATATCCTCGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTAGTCAGGGACCGTAGACCCTATGGTACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTTGACAATGAGCCCAGCACTGCCACGGTCAAGACCGATCTACGCGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGATTCTGGAGGGTCAACAACCATGTGGTCTACAATCACCAAGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTATTGAATTAA
Protein Sequence MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKTDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVLN

NCBI Accession NP_808781.1
Location 938-1336
Gene Name ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAGATTTAAATATTTAGTCTTATTGTATTTAGATAGGTTAGGTGTTATTTGCATTAACAATGTTATCAGAGCTGTACGATTCGCGACAAACAGGTCGTATGTATCTCATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGESITADQAENSVFIWEVPNPLYFTIINVEDPIYSNTRIYHIQIRFNHNLRKALSLHKAYLNYQIWTTSVQASGTTYLSRFKYLVLLYLDRLGVICINNVIRAVRFATNRSYVSHVLENHSIKFKFY

NCBI Accession NP_808782.1
Location 1083-1469
Gene Name trap
Protein Name transcription activation protein
Coding Region ATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAAACACAAAATTGCAAAGTCCAGGATTCGTCGAAAGAGAATAGACCTAAACTGTGGCTGCTCGTTCTACCAGCACATCGACTGCGCCAACCATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAG
Protein Sequence MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANHGFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLQQHQDIPHPNTVQPQPQEGAESTQSLPQLPNLDDISSSFWDDLLK

NCBI Accession NP_808783.1
Location 1426-2460
Gene Name rep
Protein Name replication-associated protein Rep
Coding Region ATGCCACGGAACCCTAATTTATTTCGTCTAGCTGCCAAAAATATTTTCTTAACATATCCACAGTGTGATATCCCCAAAGATGAAGCTATTGAAATGCTTCAAAATCTGCCATGGTCAGTCGTCAAACCAACGTACATACGAGTCGCCAGAGAGGAACACGCAGATGGATTTCCGCACCTCCACTGTCTCATCCAACTCTCCGGGAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCAATTTTCATCCAAACGCACAGGCAGCCAAAGACACCAACGCCGTCCAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACAAAATCAAACAAAGACGACGTCTACCACAACGCCGTCAATGCAGCTAGTGCTGGAGAGGCTCTCGACATTATAAGGGCCGGAGACCCAAAGACGTTCATTGTAAGCTACCATAACGTCAAAGCTAACATCGAGCGGCTCTTTCAAAAGGCTCCGGAACCCTGGGTTCCTCCGTTTCCACTCTCGTCGTTCACGAACGTTCCGGACGAGATGCAAGAATGGGCAGATGATTATTTTGGTAGGGATGCCGCTGCGCGGCCGGAGAGACCTATAAGTATAATCATCGAGGGTGAATCGAGGACGGGAAAGACAATGTGGGCGCGTGCCTTAGGCCCACACAATTATTTGAGTGGACACCTAGATTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACATCACTCCGCAATATTTAAAGATGAAGCATTGGAAAGAGCTGATTGGGGCCCAAAAGGACTGGCAATCAAATTGCAAATACGGGAAGCCAGTTCAAATTAAAGGGGGAATACCGTCAATCGTGCTCTGCAATCCTGGTGAGGGGGCCAGCTATAAAAGTTTCCTCGAAAAAGAGGAAAACAAAGCACTAAAAGATTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAA
Protein Sequence MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTYIRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQNYITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDIIRAGDPKTFIVSYHNVKANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGESRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLEKEENKALKDWTLHNAKFIFLNSTLYQA

References More References in PubMed

1

Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production.

Cai L, et al.  aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep.

PMID: 37970471

2

Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses.

Zaidi SS, et al.  Mol Plant Pathol. 2017 Sep;18(7):901-911. doi: 10.1111/mpp.12481. Epub 2016 Oct 17.

PMID: 27553982

3

Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato.

Sacco Botto C, et al.  Int J Mol Sci. 2023 Feb 2;24(3):2893. doi: 10.3390/ijms24032893.

PMID: 36769211

4

Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci.

Janssen D, et al.  Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390.

PMID: 35161372

5

First report of tomato leaf curl New Delhi virus infecting several cucurbit plants in China.

Gu Q, et al.  Plant Dis. 2023 Apr 20. doi: 10.1094/PDIS-01-23-0180-PDN. Online ahead of print.

PMID: 37081636

6

Occurrence of Tomato Leaf Curl New Delhi Virus in Cucurbit Plants in China.

Zeng R, et al.  Plant Dis. 2023 Mar 22. doi: 10.1094/PDIS-01-23-0059-PDN. Online ahead of print.

PMID: 36947833

7

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575

8

Tomato Yellow Leaf Curl Virus-Resistant and -Susceptible Tomato Genotypes Similarly Impact the Virus Population Genetics.

Marchant WG, et al.  Front Plant Sci. 2020 Dec 7;11:599697. doi: 10.3389/fpls.2020.599697. eCollection 2020.

PMID: 33365041

9

Coinfection of Tomato Plants with Tomato yellow leaf curl virus and Tomato chlorosis virus Affects the Interaction with Host and Whiteflies.

Ontiveros I, et al.  Phytopathology. 2022 Apr;112(4):944-952. doi: 10.1094/PHYTO-08-21-0341-R. Epub 2022 Mar 15.

PMID: 34698541

10

Integrated Management of Tomato Yellow Leaf Curl Virus and its Whitefly Vector in Tomato.

Riley DG, et al.  J Econ Entomol. 2019 Aug 3;112(4):1526-1540. doi: 10.1093/jee/toz051.

PMID: 30924495