| Genus | Begomovirus | 
|---|---|
| NCBI Assembly | GCF_000845785.1 | 
| Isolate | Guatemala:Sansirisay | 
| Release date | 2015/2/12 | 
| Submitter | Nakhla,M.K., Maxwell,M.D., Hidayat,S.H., Lange,D.R., Loniello,A.O., Rojas,M.R., Maxwell,D.P., Kitajima,E.W., Rojas,A., Anderson,P., Gilbertson,R.L., Mejia,L., Ramirez,P., Karkashian,J.P., Doyle,M.M. | 
| Download | Genome |GFF3 |PEP |CDS | 
 
            | NCBI Accession | NP_808780.1 | 
|---|---|
| Location | 186-941 | 
| Gene Name | cp | 
| Protein Name | capsid protein | 
| Coding Region | ATGCCTAAGCGTGATGCCCCATGGCGCTTAATGGCGGGTACCCCTAAGGTGAGTCGGTCCTCCAACCAGTCTCCCCGGACTGGTACTGGGCCTAAATTTGATAAGGCCCATGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGCTTGGAGAACGCCCGACGTTCCAAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAACGACACGATATCTCCCACGTGGGGAAGGTCATGTGCATATCCGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGGTTTTGTGTTAAGTCTGTGTATATCCTCGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTAGTCAGGGACCGTAGACCCTATGGTACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTTGACAATGAGCCCAGCACTGCCACGGTCAAGACCGATCTACGCGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGATTCTGGAGGGTCAACAACCATGTGGTCTACAATCACCAAGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTATTGAATTAA | 
| Protein Sequence | MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKTDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVLN | 
| NCBI Accession | NP_808781.1 | 
|---|---|
| Location | 938-1336 | 
| Gene Name | ren | 
| Protein Name | replication enhancer protein | 
| Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAGATTTAAATATTTAGTCTTATTGTATTTAGATAGGTTAGGTGTTATTTGCATTAACAATGTTATCAGAGCTGTACGATTCGCGACAAACAGGTCGTATGTATCTCATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA | 
| Protein Sequence | MDSRTGESITADQAENSVFIWEVPNPLYFTIINVEDPIYSNTRIYHIQIRFNHNLRKALSLHKAYLNYQIWTTSVQASGTTYLSRFKYLVLLYLDRLGVICINNVIRAVRFATNRSYVSHVLENHSIKFKFY | 
| NCBI Accession | NP_808782.1 | 
|---|---|
| Location | 1083-1469 | 
| Gene Name | trap | 
| Protein Name | transcription activation protein | 
| Coding Region | ATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAAACACAAAATTGCAAAGTCCAGGATTCGTCGAAAGAGAATAGACCTAAACTGTGGCTGCTCGTTCTACCAGCACATCGACTGCGCCAACCATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAG | 
| Protein Sequence | MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANHGFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLQQHQDIPHPNTVQPQPQEGAESTQSLPQLPNLDDISSSFWDDLLK | 
| NCBI Accession | NP_808783.1 | 
|---|---|
| Location | 1426-2460 | 
| Gene Name | rep | 
| Protein Name | replication-associated protein Rep | 
| Coding Region | ATGCCACGGAACCCTAATTTATTTCGTCTAGCTGCCAAAAATATTTTCTTAACATATCCACAGTGTGATATCCCCAAAGATGAAGCTATTGAAATGCTTCAAAATCTGCCATGGTCAGTCGTCAAACCAACGTACATACGAGTCGCCAGAGAGGAACACGCAGATGGATTTCCGCACCTCCACTGTCTCATCCAACTCTCCGGGAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCAATTTTCATCCAAACGCACAGGCAGCCAAAGACACCAACGCCGTCCAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACAAAATCAAACAAAGACGACGTCTACCACAACGCCGTCAATGCAGCTAGTGCTGGAGAGGCTCTCGACATTATAAGGGCCGGAGACCCAAAGACGTTCATTGTAAGCTACCATAACGTCAAAGCTAACATCGAGCGGCTCTTTCAAAAGGCTCCGGAACCCTGGGTTCCTCCGTTTCCACTCTCGTCGTTCACGAACGTTCCGGACGAGATGCAAGAATGGGCAGATGATTATTTTGGTAGGGATGCCGCTGCGCGGCCGGAGAGACCTATAAGTATAATCATCGAGGGTGAATCGAGGACGGGAAAGACAATGTGGGCGCGTGCCTTAGGCCCACACAATTATTTGAGTGGACACCTAGATTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACATCACTCCGCAATATTTAAAGATGAAGCATTGGAAAGAGCTGATTGGGGCCCAAAAGGACTGGCAATCAAATTGCAAATACGGGAAGCCAGTTCAAATTAAAGGGGGAATACCGTCAATCGTGCTCTGCAATCCTGGTGAGGGGGCCAGCTATAAAAGTTTCCTCGAAAAAGAGGAAAACAAAGCACTAAAAGATTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAA | 
| Protein Sequence | MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTYIRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQNYITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDIIRAGDPKTFIVSYHNVKANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGESRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLEKEENKALKDWTLHNAKFIFLNSTLYQA | 
| 1 | Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production. Cai L, et al. aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep. PMID: 37970471 | 
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| 2 | Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato. Sacco Botto C, et al. Int J Mol Sci. 2023 Feb 2;24(3):2893. doi: 10.3390/ijms24032893. PMID: 36769211 | 
| 3 | Zaidi SS, et al. Mol Plant Pathol. 2017 Sep;18(7):901-911. doi: 10.1111/mpp.12481. Epub 2016 Oct 17. PMID: 27553982 | 
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| 5 | Naganur P, et al. Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490. PMID: 36771575 | 
| 6 | Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci. Janssen D, et al. Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390. PMID: 35161372 | 
| 7 | First Report of Tomato severe leaf curl virus in Mexico. Mauricio-Castillo JA, et al. Plant Dis. 2006 Aug;90(8):1116. doi: 10.1094/PD-90-1116A. PMID: 30781338 | 
| 8 | Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide. Moriones E, et al. Virus Res. 2000 Nov;71(1-2):123-34. doi: 10.1016/s0168-1702(00)00193-3. PMID: 11137167 | 
| 9 | Vo TTB, et al. Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907. PMID: 38138051 | 
| 10 | Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus. Chatchawankanphanich O, et al. Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637. PMID: 18944261 |