Genus | Begomovirus |
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NCBI Assembly | GCF_000845785.1 |
Isolate | Guatemala:Sansirisay |
Release date | 2015/2/12 |
Submitter | Nakhla,M.K., Maxwell,M.D., Hidayat,S.H., Lange,D.R., Loniello,A.O., Rojas,M.R., Maxwell,D.P., Kitajima,E.W., Rojas,A., Anderson,P., Gilbertson,R.L., Mejia,L., Ramirez,P., Karkashian,J.P., Doyle,M.M. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_808780.1 |
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Location | 186-941 |
Gene Name | cp |
Protein Name | capsid protein |
Coding Region | ATGCCTAAGCGTGATGCCCCATGGCGCTTAATGGCGGGTACCCCTAAGGTGAGTCGGTCCTCCAACCAGTCTCCCCGGACTGGTACTGGGCCTAAATTTGATAAGGCCCATGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGCTTGGAGAACGCCCGACGTTCCAAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAACGACACGATATCTCCCACGTGGGGAAGGTCATGTGCATATCCGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGGTTTTGTGTTAAGTCTGTGTATATCCTCGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTAGTCAGGGACCGTAGACCCTATGGTACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTTGACAATGAGCCCAGCACTGCCACGGTCAAGACCGATCTACGCGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGATTCTGGAGGGTCAACAACCATGTGGTCTACAATCACCAAGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTATTGAATTAA |
Protein Sequence | MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKTDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVLN |
NCBI Accession | NP_808781.1 |
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Location | 938-1336 |
Gene Name | ren |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAGATTTAAATATTTAGTCTTATTGTATTTAGATAGGTTAGGTGTTATTTGCATTAACAATGTTATCAGAGCTGTACGATTCGCGACAAACAGGTCGTATGTATCTCATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA |
Protein Sequence | MDSRTGESITADQAENSVFIWEVPNPLYFTIINVEDPIYSNTRIYHIQIRFNHNLRKALSLHKAYLNYQIWTTSVQASGTTYLSRFKYLVLLYLDRLGVICINNVIRAVRFATNRSYVSHVLENHSIKFKFY |
NCBI Accession | NP_808782.1 |
---|---|
Location | 1083-1469 |
Gene Name | trap |
Protein Name | transcription activation protein |
Coding Region | ATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAAACACAAAATTGCAAAGTCCAGGATTCGTCGAAAGAGAATAGACCTAAACTGTGGCTGCTCGTTCTACCAGCACATCGACTGCGCCAACCATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAG |
Protein Sequence | MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANHGFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLQQHQDIPHPNTVQPQPQEGAESTQSLPQLPNLDDISSSFWDDLLK |
NCBI Accession | NP_808783.1 |
---|---|
Location | 1426-2460 |
Gene Name | rep |
Protein Name | replication-associated protein Rep |
Coding Region | ATGCCACGGAACCCTAATTTATTTCGTCTAGCTGCCAAAAATATTTTCTTAACATATCCACAGTGTGATATCCCCAAAGATGAAGCTATTGAAATGCTTCAAAATCTGCCATGGTCAGTCGTCAAACCAACGTACATACGAGTCGCCAGAGAGGAACACGCAGATGGATTTCCGCACCTCCACTGTCTCATCCAACTCTCCGGGAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCAATTTTCATCCAAACGCACAGGCAGCCAAAGACACCAACGCCGTCCAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACAAAATCAAACAAAGACGACGTCTACCACAACGCCGTCAATGCAGCTAGTGCTGGAGAGGCTCTCGACATTATAAGGGCCGGAGACCCAAAGACGTTCATTGTAAGCTACCATAACGTCAAAGCTAACATCGAGCGGCTCTTTCAAAAGGCTCCGGAACCCTGGGTTCCTCCGTTTCCACTCTCGTCGTTCACGAACGTTCCGGACGAGATGCAAGAATGGGCAGATGATTATTTTGGTAGGGATGCCGCTGCGCGGCCGGAGAGACCTATAAGTATAATCATCGAGGGTGAATCGAGGACGGGAAAGACAATGTGGGCGCGTGCCTTAGGCCCACACAATTATTTGAGTGGACACCTAGATTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACATCACTCCGCAATATTTAAAGATGAAGCATTGGAAAGAGCTGATTGGGGCCCAAAAGGACTGGCAATCAAATTGCAAATACGGGAAGCCAGTTCAAATTAAAGGGGGAATACCGTCAATCGTGCTCTGCAATCCTGGTGAGGGGGCCAGCTATAAAAGTTTCCTCGAAAAAGAGGAAAACAAAGCACTAAAAGATTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAA |
Protein Sequence | MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTYIRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQNYITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDIIRAGDPKTFIVSYHNVKANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGESRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLEKEENKALKDWTLHNAKFIFLNSTLYQA |
1 |
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2 |
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3 |
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4 |
Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci. Janssen D, et al. Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390. PMID: 35161372 |
5 |
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6 |
Occurrence of Tomato Leaf Curl New Delhi Virus in Cucurbit Plants in China. Zeng R, et al. Plant Dis. 2023 Mar 22. doi: 10.1094/PDIS-01-23-0059-PDN. Online ahead of print. PMID: 36947833 |
7 |
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8 |
Marchant WG, et al. Front Plant Sci. 2020 Dec 7;11:599697. doi: 10.3389/fpls.2020.599697. eCollection 2020. PMID: 33365041 |
9 |
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10 |
Integrated Management of Tomato Yellow Leaf Curl Virus and its Whitefly Vector in Tomato. Riley DG, et al. J Econ Entomol. 2019 Aug 3;112(4):1526-1540. doi: 10.1093/jee/toz051. PMID: 30924495 |