Tomato severe leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000845785.1
Isolate Guatemala:Sansirisay
Release date 2015/2/12
Submitter Nakhla,M.K., Maxwell,M.D., Hidayat,S.H., Lange,D.R., Loniello,A.O., Rojas,M.R., Maxwell,D.P., Kitajima,E.W., Rojas,A., Anderson,P., Gilbertson,R.L., Mejia,L., Ramirez,P., Karkashian,J.P., Doyle,M.M.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004642
ACCGGATGGCCGCGATTTTTTTTGGACCTGGCCCACTATCAGAAATTGCGTTGGGCCTTCCTGGATAAAGTTAACCAATCAGTACTCGTTTGGGTAGTCTAATTATTACTAACTTGGTCACCAAGTTGTTTTATGGTCTATAAATTTGTCGTTATGTGTGTGGTCCAACCACGTAAATATTGATAATGCCTAAGCGTGATGCCCCATGGCGCTTAATGGCGGGTACCCCTAAGGTGAGTCGGTCCTCCAACCAGTCTCCCCGGACTGGTACTGGGCCTAAATTTGATAAGGCCCATGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGCTTGGAGAACGCCCGACGTTCCAAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAACGACACGATATCTCCCACGTGGGGAAGGTCATGTGCATATCCGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGGTTTTGTGTTAAGTCTGTGTATATCCTCGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTAGTCAGGGACCGTAGACCCTATGGTACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTTGACAATGAGCCCAGCACTGCCACGGTCAAGACCGATCTACGCGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGATTCTGGAGGGTCAACAACCATGTGGTCTACAATCACCAAGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTATTGAATTAATAAAATTTGAATTTTATTGAATGATTTTCCAGTACATGAGATACATACGACCTGTTTGTCGCGAATCGTACAGCTCTGATAACATTGTTAATGCAAATAACACCTAACCTATCTAAATACAATAAGACTAAATATTTAAATCTACTTAAGTAAGTCGTCCCAGAAGCTTGAACTGATGTCGTCCAGATTTGGTAGTTGAGGTAGGCTTTGTGTAGACTCAGCGCCTTCCTGAGGTTGTGGTTGAACCGTATTTGGATGTGGTATATCCTGGTGTTGCTGTAAATTGGGTCCTCTACATTGATTATCGTGAAATAAAGGGGATTTGGTACCTCCCAGATAAAAACGGAATTCTCTGCCTGATCCGCAGTGATGCTCTCCCCTGTGCGTGAATCCATGGTTGGCGCAGTCGATGTGCTGGTAGAACGAGCAGCCACAGTTTAGGTCTATTCTCTTTCGACGAATCCTGGACTTTGCAATTTTGTGTTTAGGCTTGATAGAGGGTGGAGTTGAGGAAGATGAATTTTGCATTGTGGAGTGTCCAATCTTTTAGTGCTTTGTTTTCCTCTTTTTCGAGGAAACTTTTATAGCTGGCCCCCTCACCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTAATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGCTTCATCTTTAAATATTGCGGAGTGATGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAACCCTAGAATTGAAATCTAGGTGTCCACTCAAATAATTGTGTGGGCCTAAGGCACGCGCCCACATTGTCTTTCCCGTCCTCGATTCACCCTCGATGATTATACTTATAGGTCTCTCCGGCCGCGCAGCGGCATCCCTACCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAACGTTCGTGAACGACGAGAGTGGAAACGGAGGAACCCAGGGTTCCGGAGCCTTTTGAAAGAGCCGCTCGATGTTAGCTTTGACGTTATGGTAGCTTACAATGAACGTCTTTGGGTCTCCGGCCCTTATAATGTCGAGAGCCTCTCCAGCACTAGCTGCATTGACGGCGTTGTGGTAGACGTCGTCTTTGTTTGATTTTGTACCCCCAGACACCTTGTATTGTCCGGATTCACAATAATCACCTTCTTTGGTGATGTAATTCTGGACGGCGTTGGTGTCTTTGGCTGCCTGTGCGTTTGGATGAAAATTGGCAGACCTTCTGGGGTGAGTGAGGTCGAAAAATCTAGCATCCTTGATGTTGGACTTCCCGGAGAGTTGGATGAGACAGTGGAGGTGCGGAAATCCATCTGCGTGTTCCTCTCTGGCGACTCGTATGTACGTTGGTTTGACGACTGACCATGGCAGATTTTGAAGCATTTCAATAGCTTCATCTTTGGGGATATCACACTGTGGATATGTTAAGAAAATATTTTTGGCAGCTAGACGAAATAAATTAGGGTTCCGTGGCATTTTTGTAAATATGAGCCAGGACACCAGGGGGAGCTCTCTCTAAAACTTTATTTTGCTGGTGTCCTGGTGTCCCATTTATACTAAAACCCTCTTGGGGACACCAAGGGCAAATTCGGCCATCCGCAATAATATT

Gene Information

NCBI Accession NP_808780.1
Location 186-941
Gene Name cp
Protein Name capsid protein
Coding Region ATGCCTAAGCGTGATGCCCCATGGCGCTTAATGGCGGGTACCCCTAAGGTGAGTCGGTCCTCCAACCAGTCTCCCCGGACTGGTACTGGGCCTAAATTTGATAAGGCCCATGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGCTTGGAGAACGCCCGACGTTCCAAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAACGACACGATATCTCCCACGTGGGGAAGGTCATGTGCATATCCGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGGTTTTGTGTTAAGTCTGTGTATATCCTCGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTAGTCAGGGACCGTAGACCCTATGGTACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTTGACAATGAGCCCAGCACTGCCACGGTCAAGACCGATCTACGCGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGATTCTGGAGGGTCAACAACCATGTGGTCTACAATCACCAAGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTATTGAATTAA
Protein Sequence MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKTDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVLN

NCBI Accession NP_808781.1
Location 938-1336
Gene Name ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAGATTTAAATATTTAGTCTTATTGTATTTAGATAGGTTAGGTGTTATTTGCATTAACAATGTTATCAGAGCTGTACGATTCGCGACAAACAGGTCGTATGTATCTCATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGESITADQAENSVFIWEVPNPLYFTIINVEDPIYSNTRIYHIQIRFNHNLRKALSLHKAYLNYQIWTTSVQASGTTYLSRFKYLVLLYLDRLGVICINNVIRAVRFATNRSYVSHVLENHSIKFKFY

NCBI Accession NP_808782.1
Location 1083-1469
Gene Name trap
Protein Name transcription activation protein
Coding Region ATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAAACACAAAATTGCAAAGTCCAGGATTCGTCGAAAGAGAATAGACCTAAACTGTGGCTGCTCGTTCTACCAGCACATCGACTGCGCCAACCATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAG
Protein Sequence MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANHGFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLQQHQDIPHPNTVQPQPQEGAESTQSLPQLPNLDDISSSFWDDLLK

NCBI Accession NP_808783.1
Location 1426-2460
Gene Name rep
Protein Name replication-associated protein Rep
Coding Region ATGCCACGGAACCCTAATTTATTTCGTCTAGCTGCCAAAAATATTTTCTTAACATATCCACAGTGTGATATCCCCAAAGATGAAGCTATTGAAATGCTTCAAAATCTGCCATGGTCAGTCGTCAAACCAACGTACATACGAGTCGCCAGAGAGGAACACGCAGATGGATTTCCGCACCTCCACTGTCTCATCCAACTCTCCGGGAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCAATTTTCATCCAAACGCACAGGCAGCCAAAGACACCAACGCCGTCCAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACAAAATCAAACAAAGACGACGTCTACCACAACGCCGTCAATGCAGCTAGTGCTGGAGAGGCTCTCGACATTATAAGGGCCGGAGACCCAAAGACGTTCATTGTAAGCTACCATAACGTCAAAGCTAACATCGAGCGGCTCTTTCAAAAGGCTCCGGAACCCTGGGTTCCTCCGTTTCCACTCTCGTCGTTCACGAACGTTCCGGACGAGATGCAAGAATGGGCAGATGATTATTTTGGTAGGGATGCCGCTGCGCGGCCGGAGAGACCTATAAGTATAATCATCGAGGGTGAATCGAGGACGGGAAAGACAATGTGGGCGCGTGCCTTAGGCCCACACAATTATTTGAGTGGACACCTAGATTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACATCACTCCGCAATATTTAAAGATGAAGCATTGGAAAGAGCTGATTGGGGCCCAAAAGGACTGGCAATCAAATTGCAAATACGGGAAGCCAGTTCAAATTAAAGGGGGAATACCGTCAATCGTGCTCTGCAATCCTGGTGAGGGGGCCAGCTATAAAAGTTTCCTCGAAAAAGAGGAAAACAAAGCACTAAAAGATTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAA
Protein Sequence MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTYIRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQNYITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDIIRAGDPKTFIVSYHNVKANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGESRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLEKEENKALKDWTLHNAKFIFLNSTLYQA

References More References in PubMed

1

Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production.

Cai L, et al.  aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep.

PMID: 37970471

2

Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato.

Sacco Botto C, et al.  Int J Mol Sci. 2023 Feb 2;24(3):2893. doi: 10.3390/ijms24032893.

PMID: 36769211

3

Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses.

Zaidi SS, et al.  Mol Plant Pathol. 2017 Sep;18(7):901-911. doi: 10.1111/mpp.12481. Epub 2016 Oct 17.

PMID: 27553982

4

Molecular Characterization of a Recombinant Isolate of Tomato Leaf Curl New Delhi Virus Associated with Severe Outbreaks in Zucchini Squash in Southern Italy.

Mastrochirico M, et al.  Plants (Basel). 2023 Jun 21;12(13):2399. doi: 10.3390/plants12132399.

PMID: 37446959

5

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575

6

Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci.

Janssen D, et al.  Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390.

PMID: 35161372

7

First Report of Tomato severe leaf curl virus in Mexico.

Mauricio-Castillo JA, et al.  Plant Dis. 2006 Aug;90(8):1116. doi: 10.1094/PD-90-1116A.

PMID: 30781338

8

Tomato yellow leaf curl virus, an emerging virus complex causing epidemics worldwide.

Moriones E, et al.  Virus Res. 2000 Nov;71(1-2):123-34. doi: 10.1016/s0168-1702(00)00193-3.

PMID: 11137167

9

Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana.

Vo TTB, et al.  Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907.

PMID: 38138051

10

Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus.

Chatchawankanphanich O, et al.  Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637.

PMID: 18944261