Tomato severe leaf curl virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000845785.1 |
| Isolate | Guatemala:Sansirisay |
| Release date | 2015/2/12 |
| Submitter | Nakhla,M.K., Maxwell,M.D., Hidayat,S.H., Lange,D.R., Loniello,A.O., Rojas,M.R., Maxwell,D.P., Kitajima,E.W., Rojas,A., Anderson,P., Gilbertson,R.L., Mejia,L., Ramirez,P., Karkashian,J.P., Doyle,M.M. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_004642
Gene Information
| NCBI Accession | NP_808780.1 |
|---|---|
| Location | 186-941 |
| Gene Name | cp |
| Protein Name | capsid protein |
| Coding Region | ATGCCTAAGCGTGATGCCCCATGGCGCTTAATGGCGGGTACCCCTAAGGTGAGTCGGTCCTCCAACCAGTCTCCCCGGACTGGTACTGGGCCTAAATTTGATAAGGCCCATGCCTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGCTTGGAGAACGCCCGACGTTCCAAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTACGAGCAACGACACGATATCTCCCACGTGGGGAAGGTCATGTGCATATCCGATGTCACACGTGGTAATGGTATCACCCACCGTGTTGGTAAGCGGTTTTGTGTTAAGTCTGTGTATATCCTCGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTAGTCAGGGACCGTAGACCCTATGGTACGCCTATGGATTTCGGCCAGGTGTTCAACATGTTTGACAATGAGCCCAGCACTGCCACGGTCAAGACCGATCTACGCGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGATTCTGGAGGGTCAACAACCATGTGGTCTACAATCACCAAGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTATTGAATTAA |
| Protein Sequence | MPKRDAPWRLMAGTPKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKTDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVLN |
| NCBI Accession | NP_808781.1 |
|---|---|
| Location | 938-1336 |
| Gene Name | ren |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAGATTTAAATATTTAGTCTTATTGTATTTAGATAGGTTAGGTGTTATTTGCATTAACAATGTTATCAGAGCTGTACGATTCGCGACAAACAGGTCGTATGTATCTCATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA |
| Protein Sequence | MDSRTGESITADQAENSVFIWEVPNPLYFTIINVEDPIYSNTRIYHIQIRFNHNLRKALSLHKAYLNYQIWTTSVQASGTTYLSRFKYLVLLYLDRLGVICINNVIRAVRFATNRSYVSHVLENHSIKFKFY |
| NCBI Accession | NP_808782.1 |
|---|---|
| Location | 1083-1469 |
| Gene Name | trap |
| Protein Name | transcription activation protein |
| Coding Region | ATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAAACACAAAATTGCAAAGTCCAGGATTCGTCGAAAGAGAATAGACCTAAACTGTGGCTGCTCGTTCTACCAGCACATCGACTGCGCCAACCATGGATTCACGCACAGGGGAGAGCATCACTGCGGATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCACGATAATCAATGTAGAGGACCCAATTTACAGCAACACCAGGATATACCACATCCAAATACGGTTCAACCACAACCTCAGGAAGGCGCTGAGTCTACACAAAGCCTACCTCAACTACCAAATCTGGACGACATCAGTTCAAGCTTCTGGGACGACTTACTTAAGTAG |
| Protein Sequence | MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANHGFTHRGEHHCGSGREFRFYLGGTKSPLFHDNQCRGPNLQQHQDIPHPNTVQPQPQEGAESTQSLPQLPNLDDISSSFWDDLLK |
| NCBI Accession | NP_808783.1 |
|---|---|
| Location | 1426-2460 |
| Gene Name | rep |
| Protein Name | replication-associated protein Rep |
| Coding Region | ATGCCACGGAACCCTAATTTATTTCGTCTAGCTGCCAAAAATATTTTCTTAACATATCCACAGTGTGATATCCCCAAAGATGAAGCTATTGAAATGCTTCAAAATCTGCCATGGTCAGTCGTCAAACCAACGTACATACGAGTCGCCAGAGAGGAACACGCAGATGGATTTCCGCACCTCCACTGTCTCATCCAACTCTCCGGGAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCAATTTTCATCCAAACGCACAGGCAGCCAAAGACACCAACGCCGTCCAGAATTACATCACCAAAGAAGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACAAAATCAAACAAAGACGACGTCTACCACAACGCCGTCAATGCAGCTAGTGCTGGAGAGGCTCTCGACATTATAAGGGCCGGAGACCCAAAGACGTTCATTGTAAGCTACCATAACGTCAAAGCTAACATCGAGCGGCTCTTTCAAAAGGCTCCGGAACCCTGGGTTCCTCCGTTTCCACTCTCGTCGTTCACGAACGTTCCGGACGAGATGCAAGAATGGGCAGATGATTATTTTGGTAGGGATGCCGCTGCGCGGCCGGAGAGACCTATAAGTATAATCATCGAGGGTGAATCGAGGACGGGAAAGACAATGTGGGCGCGTGCCTTAGGCCCACACAATTATTTGAGTGGACACCTAGATTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACATCACTCCGCAATATTTAAAGATGAAGCATTGGAAAGAGCTGATTGGGGCCCAAAAGGACTGGCAATCAAATTGCAAATACGGGAAGCCAGTTCAAATTAAAGGGGGAATACCGTCAATCGTGCTCTGCAATCCTGGTGAGGGGGCCAGCTATAAAAGTTTCCTCGAAAAAGAGGAAAACAAAGCACTAAAAGATTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAA |
| Protein Sequence | MPRNPNLFRLAAKNIFLTYPQCDIPKDEAIEMLQNLPWSVVKPTYIRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNAQAAKDTNAVQNYITKEGDYCESGQYKVSGGTKSNKDDVYHNAVNAASAGEALDIIRAGDPKTFIVSYHNVKANIERLFQKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRDAAARPERPISIIIEGESRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKSFLEKEENKALKDWTLHNAKFIFLNSTLYQA |
References More References in PubMed
| 1 |
Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production. Cai L, et al. aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep. PMID: 37970471 |
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| 2 |
Zaidi SS, et al. Mol Plant Pathol. 2017 Sep;18(7):901-911. doi: 10.1111/mpp.12481. Epub 2016 Oct 17. PMID: 27553982 |
| 3 |
Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato. Sacco Botto C, et al. Int J Mol Sci. 2023 Feb 2;24(3):2893. doi: 10.3390/ijms24032893. PMID: 36769211 |
| 4 |
Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci. Janssen D, et al. Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390. PMID: 35161372 |
| 5 |
First report of tomato leaf curl New Delhi virus infecting several cucurbit plants in China. Gu Q, et al. Plant Dis. 2023 Apr 20. doi: 10.1094/PDIS-01-23-0180-PDN. Online ahead of print. PMID: 37081636 |
| 6 |
Occurrence of Tomato Leaf Curl New Delhi Virus in Cucurbit Plants in China. Zeng R, et al. Plant Dis. 2023 Mar 22. doi: 10.1094/PDIS-01-23-0059-PDN. Online ahead of print. PMID: 36947833 |
| 7 |
Naganur P, et al. Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490. PMID: 36771575 |
| 8 |
Marchant WG, et al. Front Plant Sci. 2020 Dec 7;11:599697. doi: 10.3389/fpls.2020.599697. eCollection 2020. PMID: 33365041 |
| 9 |
Ontiveros I, et al. Phytopathology. 2022 Apr;112(4):944-952. doi: 10.1094/PHYTO-08-21-0341-R. Epub 2022 Mar 15. PMID: 34698541 |
| 10 |
Integrated Management of Tomato Yellow Leaf Curl Virus and its Whitefly Vector in Tomato. Riley DG, et al. J Econ Entomol. 2019 Aug 3;112(4):1526-1540. doi: 10.1093/jee/toz051. PMID: 30924495 |