Spinach curly top Arizona virus
Basic Information
| Genus |
Becurtovirus
|
| NCBI Assembly |
GCF_000893115.1 |
| Isolate |
USA |
| Release date |
2015/2/22 |
| Submitter |
Hernandez-Zepeda,C., Arguello-Astorga,G., Brown,J.K. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
CCCTGCAAATGCCTTTACACGTGTCGTAGTATGACTGACTCTTTTAAAAGCGTGCTCCCCACGCTGCCTTTACTTTTCTAAAGTAAAGTTGTGGGACCTACCACGTTACTTTGTTGAATTCAATTATTTGAATTTGAAATTTCTCATGTTATATACCGATAGGGTTTTAGTATATATACATGTATAAATGATGGTCTGTCTACCAGACTGGTTGTTCCTTTTGTTTATTTTGAGTATTCTTCTACAGTCTGGTACCAATTTTTATGGGACCTTTCAGAGTGGGACAGTTTCCAAACAATTATCCTGCGTTGCTAGCCGTGTCGACGAGTTGTTTCTTCAGATACAACAAGTGGTGTATTCTAGGAATACAGCCGGAAATCGAGCCGTTGAGTCTAGAAGACGGCGAGGTCTTTCTTCAGTTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCGTAAGTGCAGTTTCGGTAGAAAGTGCGTTCTTTATCAGGATATTTACAAGGAGTACGTGAAGGATGAGTCAGAAAAGAAAAACGAAGTCGCAGACTTCATGGCCGAAGAAGAGGAAGACGACTTCTGGGAAGAATTATCAATGGAAGCGACCTGTTCAAAAGAACAGGGCGTTGAAGTTGAAGATGTATGATGACATGCTTGGTGCTGGAGGTATTGGTTCAACCATCAGCAATGATGGGTTGATTACTATGCTCAATAATTATGTTCAGGGTATAGGTGACAGTCAGAGGTCTACGAATGTGACTGTTACAAGGCACATGAAGTTCGATATGGCTCTCATGGCCAGTTCTGGGTTTTGGGAGGCTCCCAATTATATGACTCAATATCATTGGATTATTGTTGATCGAGATGTTGGATCTGTCTTTCCGACTAAGTTGGATATGATTTTTGATATTCCTTCTAATGGTCAGGCTATGCCGTCGACCTATAGAATTCGTCGTGATAGTAATGAACGATTTATCGTGAAGAAGAAGTGGACTACGCATATGATGTCTACGGGTACTGATTATGGTGGCAAACAGACTTACAAAGCGCCGTCTCAGCCTAATTATAAGAAGGCTATGAATATTAATGTCAGGAATATCAATGTGAAGACGATATGGAAGGACACCGGAGGTGGAAAATATGAAGATGTTAAAGAGAATGCTCTGTTGTACGTTGTTGTCAACGATAATACTGATAACACTAATATGTATGCCACATTATTTGGTAATTGTAGGTGTTATTTCTATTAATAGTTTGAAATGTATCAATGATATTGAAGGTTGTTATGGAAATATTTGTTTACAAATATTTGTGGTTAATATTAATAAATGGAGATATGTAAATATCTGGTATTCATGACTTGAACAAACAAATTTACATTAAAAACACGCTCAGAAAAAAAACACACTTCGCAATAACTGGGGGAAAAGTCAAATTACAATAGTTTAGTCCTGCCGAGCCGAAGGCGAGGACCTACCTGCAGCCTATTTATTCTACTCTGTAGAATACCAAACTTCATCACTAGATAAATAGTACACTTCGCAGTTTGCGTGGAACCAATCCTTCATTGCATCACTCATACATGGAATCCAGTCCATATCTGGATTTGTTATAGCAATACATGGTCTCCCTCCTGGGATTATGAGGTTTGGTTTGTGTTTTATCCAAACACTATAGTCTTCATTACATCCTATTATGGATTTGAACAACTCTTGTTGTATTTTCATATATCTTATATCATCTATTACATGGTACGTAGTATGTTCAATGTCATAATTGGACCAATCTAGTACCATTCCTGACATGTAGTGATGTCTTCCTAACGATCTTGCCCATTGGGTCTTTCCTGTCCTTGAAGGACCGCAGATGTAGAGACTTCGGGGTCTGACTGGTCTGTTGTCTGGTTCCTGGAAGAATTTAGATCGTTAGGATTTTCACTACATGTTAATTCGTCGCCTAGACGTTCTATGTGGTAATGTTCTGCAATACTTATTTCCCAATCCTGTAGGATTGAACCTCTACAGTTATTACATAGCTCGTAATTAAGACAGTGACTACTTACGAAATATATATTGTGTTCCGCCCACTCTTTGATTTGGTCAGGCAACCTAGTGAACTCCGTCCATCGGGGTAGATAAGGTTGCACAACTGGCCTGAAATGGTAGTTGGCGAAGGCCAAAATTGAAGGCCATCTGAGGACAAAGTCCGTTGGGCAGGATTCTCTGATGTTATTGAAGAACTCGTCCTTGGTGTTGGATGAATCAAGAATTCGTCTCCATTCCAGGTTGCTGTCGCCAAGACGGTTTGGAGAGCGCCCTGCCAGTCGAAGCTCTCCAAAGCATCGTGGTTGTTGGTCCTCCTTGGTGATGTACTCCCAAGCTCGCTTGGGGGCGTTGAGTCCGTCGATTCTTGGATGTATTGTTCTGCCATCTGGTAGGATGATGTTGAAAAACAGGTTCCCATTAACCTGTAATTTTTTATTGCACTGGAATATGCAATGTGTGTGGAATCCCCCTTCAGGGTTTGATTCAGTTGGTTGGTGGTGTTCCAATGCAACTGATAAGAAGAGTACTTCGAATTGTTGGAGTAGGGCTAGTAATTTCTCAAATATATAATCTTTAAAATCCCCACCTATTTGTGAATAGGTGAGAAAAGCATTCTTTTTTTGGAACCGGAAATAACCGGGTCCATTTTGATTAGGACGGTTTCTGGAGGGTGTTCGGGCCATTTTTTATTTCAAAAAGGAAAGAGGGAAATAAGAGTTGTATTTACTCTTTCCGTACTAGGCTGAAAAAAAACTCTATATGTTGGAGTAGAGTAATGTGTTGCTTATATATCAGAGTAAAGGCATTTGCAGATAAGATT
Gene Information
|
NCBI Accession
|
YP_004207921.1
|
|
Location
|
188-454 |
|
Gene Name
|
V3 |
|
Protein Name
|
V3 |
|
Coding Region
|
ATGATGGTCTGTCTACCAGACTGGTTGTTCCTTTTGTTTATTTTGAGTATTCTTCTACAGTCTGGTACCAATTTTTATGGGACCTTTCAGAGTGGGACAGTTTCCAAACAATTATCCTGCGTTGCTAGCCGTGTCGACGAGTTGTTTCTTCAGATACAACAAGTGGTGTATTCTAGGAATACAGCCGGAAATCGAGCCGTTGAGTCTAGAAGACGGCGAGGTCTTTCTTCAGTTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCGTAA |
|
Protein Sequence
|
MMVCLPDWLFLLFILSILLQSGTNFYGTFQSGTVSKQLSCVASRVDELFLQIQQVVYSRNTAGNRAVESRRRRGLSSVPEGSEEVAEA |
|
NCBI Accession
|
YP_004207922.1
|
|
Location
|
264-641 |
|
Gene Name
|
V2 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGGGACCTTTCAGAGTGGGACAGTTTCCAAACAATTATCCTGCGTTGCTAGCCGTGTCGACGAGTTGTTTCTTCAGATACAACAAGTGGTGTATTCTAGGAATACAGCCGGAAATCGAGCCGTTGAGTCTAGAAGACGGCGAGGTCTTTCTTCAGTTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCGTAAGTGCAGTTTCGGTAGAAAGTGCGTTCTTTATCAGGATATTTACAAGGAGTACGTGAAGGATGAGTCAGAAAAGAAAAACGAAGTCGCAGACTTCATGGCCGAAGAAGAGGAAGACGACTTCTGGGAAGAATTATCAATGGAAGCGACCTGTTCAAAAGAACAGGGCGTTGAAGTTGAAGATGTATGA |
|
Protein Sequence
|
MGPFRVGQFPNNYPALLAVSTSCFFRYNKWCILGIQPEIEPLSLEDGEVFLQFQKEVKKLLRRKCSFGRKCVLYQDIYKEYVKDESEKKNEVADFMAEEEEDDFWEELSMEATCSKEQGVEVEDV |
|
NCBI Accession
|
YP_004207923.1
|
|
Location
|
514-1245 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGTCAGAAAAGAAAAACGAAGTCGCAGACTTCATGGCCGAAGAAGAGGAAGACGACTTCTGGGAAGAATTATCAATGGAAGCGACCTGTTCAAAAGAACAGGGCGTTGAAGTTGAAGATGTATGATGACATGCTTGGTGCTGGAGGTATTGGTTCAACCATCAGCAATGATGGGTTGATTACTATGCTCAATAATTATGTTCAGGGTATAGGTGACAGTCAGAGGTCTACGAATGTGACTGTTACAAGGCACATGAAGTTCGATATGGCTCTCATGGCCAGTTCTGGGTTTTGGGAGGCTCCCAATTATATGACTCAATATCATTGGATTATTGTTGATCGAGATGTTGGATCTGTCTTTCCGACTAAGTTGGATATGATTTTTGATATTCCTTCTAATGGTCAGGCTATGCCGTCGACCTATAGAATTCGTCGTGATAGTAATGAACGATTTATCGTGAAGAAGAAGTGGACTACGCATATGATGTCTACGGGTACTGATTATGGTGGCAAACAGACTTACAAAGCGCCGTCTCAGCCTAATTATAAGAAGGCTATGAATATTAATGTCAGGAATATCAATGTGAAGACGATATGGAAGGACACCGGAGGTGGAAAATATGAAGATGTTAAAGAGAATGCTCTGTTGTACGTTGTTGTCAACGATAATACTGATAACACTAATATGTATGCCACATTATTTGGTAATTGTAGGTGTTATTTCTATTAA |
|
Protein Sequence
|
MSQKRKTKSQTSWPKKRKTTSGKNYQWKRPVQKNRALKLKMYDDMLGAGGIGSTISNDGLITMLNNYVQGIGDSQRSTNVTVTRHMKFDMALMASSGFWEAPNYMTQYHWIIVDRDVGSVFPTKLDMIFDIPSNGQAMPSTYRIRRDSNERFIVKKKWTTHMMSTGTDYGGKQTYKAPSQPNYKKAMNINVRNINVKTIWKDTGGGKYEDVKENALLYVVVNDNTDNTNMYATLFGNCRCYFY |
|
NCBI Accession
|
YP_004207924.1
|
|
Location
|
1489-1791 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGGTACTAGATTGGTCCAATTATGACATTGAACATACTACGTACCATGTAATAGATGATATAAGATATATGAAAATACAACAAGAGTTGTTCAAATCCATAATAGGATGTAATGAAGACTATAGTGTTTGGATAAAACACAAACCAAACCTCATAATCCCAGGAGGGAGACCATGTATTGCTATAACAAATCCAGATATGGACTGGATTCCATGTATGAGTGATGCAATGAAGGATTGGTTCCACGCAAACTGCGAAGTGTACTATTTATCTAGTGATGAAGTTTGGTATTCTACAGAGTAG |
|
Protein Sequence
|
MVLDWSNYDIEHTTYHVIDDIRYMKIQQELFKSIIGCNEDYSVWIKHKPNLIIPGGRPCIAITNPDMDWIPCMSDAMKDWFHANCEVYYLSSDEVWYSTE |
|
NCBI Accession
|
YP_004207925.1
|
|
Location
|
1815-2723 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGGCCCGAACACCCTCCAGAAACCGTCCTAATCAAAATGGACCCGGTTATTTCCGGTTCCAAAAAAAGAATGCTTTTCTCACCTATTCACAAATAGGTGGGGATTTTAAAGATTATATATTTGAGAAATTACTAGCCCTACTCCAACAATTCGAAGTACTCTTCTTATCAGTTGCATTGGAACACCACCAACCAACTGAATCAAACCCTGAAGGGGGATTCCACACACATTGCATATTCCAGTGCAATAAAAAATTACAGGTTAATGGGAACCTGTTTTTCAACATCATCCTACCAGATGGCAGAACAATACATCCAAGAATCGACGGACTCAACGCCCCCAAGCGAGCTTGGGAGTACATCACCAAGGAGGACCAACAACCACGATGCTTTGGAGAGCTTCGACTGGCAGGGCGCTCTCCAAACCGTCTTGGCGACAGCAACCTGGAATGGAGACGAATTCTTGATTCATCCAACACCAAGGACGAGTTCTTCAATAACATCAGAGAATCCTGCCCAACGGACTTTGTCCTCAGATGGCCTTCAATTTTGGCCTTCGCCAACTACCATTTCAGGCCAGTTGTGCAACCTTATCTACCCCGATGGACGGAGTTCACTAGGTTGCCTGACCAAATCAAAGAGTGGGCGGAACACAATATATATTTCGTAAGTAGTCACTGTCTTAATTACGAGCTATGTAATAACTGTAGAGGTTCAATCCTACAGGATTGGGAAATAAGTATTGCAGAACATTACCACATAGAACGTCTAGGCGACGAATTAACATGTAGTGAAAATCCTAACGATCTAAATTCTTCCAGGAACCAGACAACAGACCAGTCAGACCCCGAAGTCTCTACATCTGCGGTCCTTCAAGGACAGGAAAGACCCAATGGGCAAGATCGTTAG |
|
Protein Sequence
|
MARTPSRNRPNQNGPGYFRFQKKNAFLTYSQIGGDFKDYIFEKLLALLQQFEVLFLSVALEHHQPTESNPEGGFHTHCIFQCNKKLQVNGNLFFNIILPDGRTIHPRIDGLNAPKRAWEYITKEDQQPRCFGELRLAGRSPNRLGDSNLEWRRILDSSNTKDEFFNNIRESCPTDFVLRWPSILAFANYHFRPVVQPYLPRWTEFTRLPDQIKEWAEHNIYFVSSHCLNYELCNNCRGSILQDWEISIAEHYHIERLGDELTCSENPNDLNSSRNQTTDQSDPEVSTSAVLQGQERPNGQDR |