Spinach curly top Arizona virus

Basic Information

Genus Becurtovirus
NCBI Assembly GCF_000893115.1
Isolate USA
Release date 2015/2/22
Submitter Hernandez-Zepeda,C., Arguello-Astorga,G., Brown,J.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_015051
CCCTGCAAATGCCTTTACACGTGTCGTAGTATGACTGACTCTTTTAAAAGCGTGCTCCCCACGCTGCCTTTACTTTTCTAAAGTAAAGTTGTGGGACCTACCACGTTACTTTGTTGAATTCAATTATTTGAATTTGAAATTTCTCATGTTATATACCGATAGGGTTTTAGTATATATACATGTATAAATGATGGTCTGTCTACCAGACTGGTTGTTCCTTTTGTTTATTTTGAGTATTCTTCTACAGTCTGGTACCAATTTTTATGGGACCTTTCAGAGTGGGACAGTTTCCAAACAATTATCCTGCGTTGCTAGCCGTGTCGACGAGTTGTTTCTTCAGATACAACAAGTGGTGTATTCTAGGAATACAGCCGGAAATCGAGCCGTTGAGTCTAGAAGACGGCGAGGTCTTTCTTCAGTTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCGTAAGTGCAGTTTCGGTAGAAAGTGCGTTCTTTATCAGGATATTTACAAGGAGTACGTGAAGGATGAGTCAGAAAAGAAAAACGAAGTCGCAGACTTCATGGCCGAAGAAGAGGAAGACGACTTCTGGGAAGAATTATCAATGGAAGCGACCTGTTCAAAAGAACAGGGCGTTGAAGTTGAAGATGTATGATGACATGCTTGGTGCTGGAGGTATTGGTTCAACCATCAGCAATGATGGGTTGATTACTATGCTCAATAATTATGTTCAGGGTATAGGTGACAGTCAGAGGTCTACGAATGTGACTGTTACAAGGCACATGAAGTTCGATATGGCTCTCATGGCCAGTTCTGGGTTTTGGGAGGCTCCCAATTATATGACTCAATATCATTGGATTATTGTTGATCGAGATGTTGGATCTGTCTTTCCGACTAAGTTGGATATGATTTTTGATATTCCTTCTAATGGTCAGGCTATGCCGTCGACCTATAGAATTCGTCGTGATAGTAATGAACGATTTATCGTGAAGAAGAAGTGGACTACGCATATGATGTCTACGGGTACTGATTATGGTGGCAAACAGACTTACAAAGCGCCGTCTCAGCCTAATTATAAGAAGGCTATGAATATTAATGTCAGGAATATCAATGTGAAGACGATATGGAAGGACACCGGAGGTGGAAAATATGAAGATGTTAAAGAGAATGCTCTGTTGTACGTTGTTGTCAACGATAATACTGATAACACTAATATGTATGCCACATTATTTGGTAATTGTAGGTGTTATTTCTATTAATAGTTTGAAATGTATCAATGATATTGAAGGTTGTTATGGAAATATTTGTTTACAAATATTTGTGGTTAATATTAATAAATGGAGATATGTAAATATCTGGTATTCATGACTTGAACAAACAAATTTACATTAAAAACACGCTCAGAAAAAAAACACACTTCGCAATAACTGGGGGAAAAGTCAAATTACAATAGTTTAGTCCTGCCGAGCCGAAGGCGAGGACCTACCTGCAGCCTATTTATTCTACTCTGTAGAATACCAAACTTCATCACTAGATAAATAGTACACTTCGCAGTTTGCGTGGAACCAATCCTTCATTGCATCACTCATACATGGAATCCAGTCCATATCTGGATTTGTTATAGCAATACATGGTCTCCCTCCTGGGATTATGAGGTTTGGTTTGTGTTTTATCCAAACACTATAGTCTTCATTACATCCTATTATGGATTTGAACAACTCTTGTTGTATTTTCATATATCTTATATCATCTATTACATGGTACGTAGTATGTTCAATGTCATAATTGGACCAATCTAGTACCATTCCTGACATGTAGTGATGTCTTCCTAACGATCTTGCCCATTGGGTCTTTCCTGTCCTTGAAGGACCGCAGATGTAGAGACTTCGGGGTCTGACTGGTCTGTTGTCTGGTTCCTGGAAGAATTTAGATCGTTAGGATTTTCACTACATGTTAATTCGTCGCCTAGACGTTCTATGTGGTAATGTTCTGCAATACTTATTTCCCAATCCTGTAGGATTGAACCTCTACAGTTATTACATAGCTCGTAATTAAGACAGTGACTACTTACGAAATATATATTGTGTTCCGCCCACTCTTTGATTTGGTCAGGCAACCTAGTGAACTCCGTCCATCGGGGTAGATAAGGTTGCACAACTGGCCTGAAATGGTAGTTGGCGAAGGCCAAAATTGAAGGCCATCTGAGGACAAAGTCCGTTGGGCAGGATTCTCTGATGTTATTGAAGAACTCGTCCTTGGTGTTGGATGAATCAAGAATTCGTCTCCATTCCAGGTTGCTGTCGCCAAGACGGTTTGGAGAGCGCCCTGCCAGTCGAAGCTCTCCAAAGCATCGTGGTTGTTGGTCCTCCTTGGTGATGTACTCCCAAGCTCGCTTGGGGGCGTTGAGTCCGTCGATTCTTGGATGTATTGTTCTGCCATCTGGTAGGATGATGTTGAAAAACAGGTTCCCATTAACCTGTAATTTTTTATTGCACTGGAATATGCAATGTGTGTGGAATCCCCCTTCAGGGTTTGATTCAGTTGGTTGGTGGTGTTCCAATGCAACTGATAAGAAGAGTACTTCGAATTGTTGGAGTAGGGCTAGTAATTTCTCAAATATATAATCTTTAAAATCCCCACCTATTTGTGAATAGGTGAGAAAAGCATTCTTTTTTTGGAACCGGAAATAACCGGGTCCATTTTGATTAGGACGGTTTCTGGAGGGTGTTCGGGCCATTTTTTATTTCAAAAAGGAAAGAGGGAAATAAGAGTTGTATTTACTCTTTCCGTACTAGGCTGAAAAAAAACTCTATATGTTGGAGTAGAGTAATGTGTTGCTTATATATCAGAGTAAAGGCATTTGCAGATAAGATT

Gene Information

NCBI Accession YP_004207921.1
Location 188-454
Gene Name V3
Protein Name V3
Coding Region ATGATGGTCTGTCTACCAGACTGGTTGTTCCTTTTGTTTATTTTGAGTATTCTTCTACAGTCTGGTACCAATTTTTATGGGACCTTTCAGAGTGGGACAGTTTCCAAACAATTATCCTGCGTTGCTAGCCGTGTCGACGAGTTGTTTCTTCAGATACAACAAGTGGTGTATTCTAGGAATACAGCCGGAAATCGAGCCGTTGAGTCTAGAAGACGGCGAGGTCTTTCTTCAGTTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCGTAA
Protein Sequence MMVCLPDWLFLLFILSILLQSGTNFYGTFQSGTVSKQLSCVASRVDELFLQIQQVVYSRNTAGNRAVESRRRRGLSSVPEGSEEVAEA

NCBI Accession YP_004207922.1
Location 264-641
Gene Name V2
Protein Name V2
Coding Region ATGGGACCTTTCAGAGTGGGACAGTTTCCAAACAATTATCCTGCGTTGCTAGCCGTGTCGACGAGTTGTTTCTTCAGATACAACAAGTGGTGTATTCTAGGAATACAGCCGGAAATCGAGCCGTTGAGTCTAGAAGACGGCGAGGTCTTTCTTCAGTTCCAGAAGGAAGTGAAGAAGTTGCTGAGGCGTAAGTGCAGTTTCGGTAGAAAGTGCGTTCTTTATCAGGATATTTACAAGGAGTACGTGAAGGATGAGTCAGAAAAGAAAAACGAAGTCGCAGACTTCATGGCCGAAGAAGAGGAAGACGACTTCTGGGAAGAATTATCAATGGAAGCGACCTGTTCAAAAGAACAGGGCGTTGAAGTTGAAGATGTATGA
Protein Sequence MGPFRVGQFPNNYPALLAVSTSCFFRYNKWCILGIQPEIEPLSLEDGEVFLQFQKEVKKLLRRKCSFGRKCVLYQDIYKEYVKDESEKKNEVADFMAEEEEDDFWEELSMEATCSKEQGVEVEDV

NCBI Accession YP_004207923.1
Location 514-1245
Gene Name V1
Protein Name coat protein
Coding Region ATGAGTCAGAAAAGAAAAACGAAGTCGCAGACTTCATGGCCGAAGAAGAGGAAGACGACTTCTGGGAAGAATTATCAATGGAAGCGACCTGTTCAAAAGAACAGGGCGTTGAAGTTGAAGATGTATGATGACATGCTTGGTGCTGGAGGTATTGGTTCAACCATCAGCAATGATGGGTTGATTACTATGCTCAATAATTATGTTCAGGGTATAGGTGACAGTCAGAGGTCTACGAATGTGACTGTTACAAGGCACATGAAGTTCGATATGGCTCTCATGGCCAGTTCTGGGTTTTGGGAGGCTCCCAATTATATGACTCAATATCATTGGATTATTGTTGATCGAGATGTTGGATCTGTCTTTCCGACTAAGTTGGATATGATTTTTGATATTCCTTCTAATGGTCAGGCTATGCCGTCGACCTATAGAATTCGTCGTGATAGTAATGAACGATTTATCGTGAAGAAGAAGTGGACTACGCATATGATGTCTACGGGTACTGATTATGGTGGCAAACAGACTTACAAAGCGCCGTCTCAGCCTAATTATAAGAAGGCTATGAATATTAATGTCAGGAATATCAATGTGAAGACGATATGGAAGGACACCGGAGGTGGAAAATATGAAGATGTTAAAGAGAATGCTCTGTTGTACGTTGTTGTCAACGATAATACTGATAACACTAATATGTATGCCACATTATTTGGTAATTGTAGGTGTTATTTCTATTAA
Protein Sequence MSQKRKTKSQTSWPKKRKTTSGKNYQWKRPVQKNRALKLKMYDDMLGAGGIGSTISNDGLITMLNNYVQGIGDSQRSTNVTVTRHMKFDMALMASSGFWEAPNYMTQYHWIIVDRDVGSVFPTKLDMIFDIPSNGQAMPSTYRIRRDSNERFIVKKKWTTHMMSTGTDYGGKQTYKAPSQPNYKKAMNINVRNINVKTIWKDTGGGKYEDVKENALLYVVVNDNTDNTNMYATLFGNCRCYFY

NCBI Accession YP_004207924.1
Location 1489-1791
Gene Name C2
Protein Name C2
Coding Region ATGGTACTAGATTGGTCCAATTATGACATTGAACATACTACGTACCATGTAATAGATGATATAAGATATATGAAAATACAACAAGAGTTGTTCAAATCCATAATAGGATGTAATGAAGACTATAGTGTTTGGATAAAACACAAACCAAACCTCATAATCCCAGGAGGGAGACCATGTATTGCTATAACAAATCCAGATATGGACTGGATTCCATGTATGAGTGATGCAATGAAGGATTGGTTCCACGCAAACTGCGAAGTGTACTATTTATCTAGTGATGAAGTTTGGTATTCTACAGAGTAG
Protein Sequence MVLDWSNYDIEHTTYHVIDDIRYMKIQQELFKSIIGCNEDYSVWIKHKPNLIIPGGRPCIAITNPDMDWIPCMSDAMKDWFHANCEVYYLSSDEVWYSTE

NCBI Accession YP_004207925.1
Location 1815-2723
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCCCGAACACCCTCCAGAAACCGTCCTAATCAAAATGGACCCGGTTATTTCCGGTTCCAAAAAAAGAATGCTTTTCTCACCTATTCACAAATAGGTGGGGATTTTAAAGATTATATATTTGAGAAATTACTAGCCCTACTCCAACAATTCGAAGTACTCTTCTTATCAGTTGCATTGGAACACCACCAACCAACTGAATCAAACCCTGAAGGGGGATTCCACACACATTGCATATTCCAGTGCAATAAAAAATTACAGGTTAATGGGAACCTGTTTTTCAACATCATCCTACCAGATGGCAGAACAATACATCCAAGAATCGACGGACTCAACGCCCCCAAGCGAGCTTGGGAGTACATCACCAAGGAGGACCAACAACCACGATGCTTTGGAGAGCTTCGACTGGCAGGGCGCTCTCCAAACCGTCTTGGCGACAGCAACCTGGAATGGAGACGAATTCTTGATTCATCCAACACCAAGGACGAGTTCTTCAATAACATCAGAGAATCCTGCCCAACGGACTTTGTCCTCAGATGGCCTTCAATTTTGGCCTTCGCCAACTACCATTTCAGGCCAGTTGTGCAACCTTATCTACCCCGATGGACGGAGTTCACTAGGTTGCCTGACCAAATCAAAGAGTGGGCGGAACACAATATATATTTCGTAAGTAGTCACTGTCTTAATTACGAGCTATGTAATAACTGTAGAGGTTCAATCCTACAGGATTGGGAAATAAGTATTGCAGAACATTACCACATAGAACGTCTAGGCGACGAATTAACATGTAGTGAAAATCCTAACGATCTAAATTCTTCCAGGAACCAGACAACAGACCAGTCAGACCCCGAAGTCTCTACATCTGCGGTCCTTCAAGGACAGGAAAGACCCAATGGGCAAGATCGTTAG
Protein Sequence MARTPSRNRPNQNGPGYFRFQKKNAFLTYSQIGGDFKDYIFEKLLALLQQFEVLFLSVALEHHQPTESNPEGGFHTHCIFQCNKKLQVNGNLFFNIILPDGRTIHPRIDGLNAPKRAWEYITKEDQQPRCFGELRLAGRSPNRLGDSNLEWRRILDSSNTKDEFFNNIRESCPTDFVLRWPSILAFANYHFRPVVQPYLPRWTEFTRLPDQIKEWAEHNIYFVSSHCLNYELCNNCRGSILQDWEISIAEHYHIERLGDELTCSENPNDLNSSRNQTTDQSDPEVSTSAVLQGQERPNGQDR

References More References in PubMed

1

First Report of a New Curtovirus Species, Spinach severe curly top virus, in Commercial Spinach Plants (Spinacia oleracea) from South-Central Arizona.

Hernandez C, et al.  Plant Dis. 2010 Jul;94(7):917. doi: 10.1094/PDIS-94-7-0917B.

PMID: 30743586
2

Fulfilling Koch's postulates for beet curly top Iran virus and proposal for consideration of new genus in the family Geminiviridae.

Heydarnejad J, et al.  Arch Virol. 2013 Feb;158(2):435-43. doi: 10.1007/s00705-012-1485-6. Epub 2012 Oct 19.

PMID: 23081676
3

New World Cactaceae Plants Harbor Diverse Geminiviruses.

Fontenele RS, et al.  Viruses. 2021 Apr 16;13(4):694. doi: 10.3390/v13040694.

PMID: 33923787
4

Intergeneric recombination between a new, spinach-infecting curtovirus and a new geminivirus belonging to the genus Becurtovirus: first New World exemplar.

Hernández-Zepeda C, et al.  Arch Virol. 2013 Nov;158(11):2245-54. doi: 10.1007/s00705-013-1733-4. Epub 2013 May 26.

PMID: 23708296
5

Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus.

Varsani A, et al.  Arch Virol. 2014 Aug;159(8):2193-203. doi: 10.1007/s00705-014-2050-2. Epub 2014 Mar 22.

PMID: 24658781