Tomato mottle virus
Basic Information
Genomic Organization
JBrowse
Genome
GGGGCATTTTTGTAATAAGAAGAGGTACTCCAGATGAGTTACTCCATTTGAGCCTTCTCAAACTTGCTCATTCAATTGGAGTATTAGAGTAACTTATATATAAGAACCCTCTATAGAACTATTAATCTGGTTCATACACGTGGCGGCCATCCGATATAATATTACCGGATGGCCGCGCGATTTTTTTAATCCGTACAGTCCAACTCTCTCTCGTCCAATCATATTGCGTCGTACAAGCCTATATATTTCCAACAACTTGGGCCTTAAGTTGTTGGAGGCCCATTATAAATTAAAGTGATCTTGGCCCAATGTCTTTAACTCAAAATGCCTAAGCGTGATTTGCCATGGCGATCGATGGCGGGAACCTCAAAGGTTAGCCGCAATGCTAATTATTCTCCCCGTGCAGGTATTGGGCCAAGAATTAACAAGGCCGCTGAATGGGTGAACCGGCCCATGTACAGGAAGCCCAGGATGTATCGGACTCTTAGGACAACTGACGTCGCCAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCTTTCGAACAGCGCCATGACATCTCACATATCGGTAAGGTCATGTGCATATCCGATGTGACTCGTGGTAATGGCATAACCCACCGTGTTGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTTGGTAAGATTTGGATGGATGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTAAGAGATCGTAGACCCTATGGTACTCCAATGGACATTTGGACAGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCTACTGTCAAAAACGATCTACGCGATCGTTACCAGGTCATGCATAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTTAAGAGGTTCTGGAAGGTCAACAATCATGTAGTCTATAATCATCAAGAGGCTGGCAAGTACGAGAATCACACAGAGAACGCCTTGTTATTGTATATGGCATGCACTCATGCGTCTAACCCTGTATATGCAACTTTGAAAATTCGAATCTATTTTTATGATTCGATCACGAATTAATAAAATTTGAATTTTATTGAATGATTCTCCAATACATGATTTACATACACTCTGTTTGTTGCGAAACGTACAGCTCTAACTACATTGTTTATTGAAATAACACCTAATTGATCTAGATACATGTTGACTAAATATCTAAATCTAGCTAAATAAATTGATCCAGAAGCTGTCATCGACGTCGTCCAAACTTGGAAGTTCAGGTAGGCTTTGTGGAGATGCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGTACGTGGTATACCCTCGTTCTGGTATACAGTGGGTCCTCTACTCTGTGTATCTTGAAATAAAGGGGATTTTCTAGCTCCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCCGCACAGCCTAAGTGGAAGTAGATGGAGCACCCGCACTGTAGATCAACCCTGCGCCTTCTGATTGCCCGTTTCTTGGCTTGCCTGTGTGCTCTCTTGATAGAGGGGGGCTGTGAGGGTGATGAAGATCGCATTCTTGATAGTCCAGTTCTTGAGACCTGTATTTTCTGCTTTGTCTAAGAACTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTTGATTGCCAATCTTTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACATCATTCGAGAAGACTCGACCATTGAAGTCTAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGCGCCCACATCGTCTTCCCTGTTCTTGAATCACCCTCGACGATGATACTTACAGGTCTATCCGGCGGCGCAGCGTCACCCGTCCCGAAATAATTATCCGCCCATTCCTGCATCTCGTCAGGAACGTTAGTGAAAGAAGAGACTTGAAATGGAGGAACCCACGGTTCCGGAGCCTTTGCGAATATTCGTTCTAGGTTAGAGCGGATGTTATGATTTTGTAATACAAAATCTTTTGGTTGTTCTTCCCTTAGAACCGCTAAGGCAGATTGAACCGAACCTGCATTTAATGCTTTCGCATATGAATCATTAGCAGACTGCTGGCCTCCTCTGGCAGATCTGCCGTCGATTTGGAAATCTCCCCATTCGATTGTATCTCCGTCCTTGTCGATGTATGATTTGACGTCGGAGCTCGATTTAGCTCCCTGAATATTCGGATGGAAATGTGCTGACCGGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTCGTGCATTGGTACTTACCTTCGAACTGAACAAGCACATGGAGATGAGGTTCCCCATTTTCATGAAGCTCTCTGCAAATTTTGATGAATTTCTTGTTGACTGGGGTATTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGATAGAGAGCACTGGGGATAAGTTAGGAAATAGTTCTTTGACTGAACTCTAAATTTCTTTGGTG
GTGGCATTTTTGTAATAAGAATGGGTACTCCAGATGAGTTACTCCAATTGAGCCTTCTCAAACTTGCTCATTCAATTGGAGTATTAGAGTAACTTATATATAAGAACCCTCTATAGAACTATTAATCTGGTTCCTACACGTGGCGGCCATCCGATATAATATTACCGGATGGCCGCGCCCCCCCCCCTTTTATACGCGCGCCTCTTTTGTTGTATTTCCACGCTCCTTCCTGTTGGTGCGTGTCCAACACTTCCCATCTTTTTGAGTAGCCTTTAATTTGAATTAAAGGTTAAAACTTTATCGCGATGACTAATCATATCACATTGACCATGTGAAGGACGTGGCATTATTTCGACCATGCTGCTGAGTTTATTTGCTATTATTGTTCTATCCATAATCTATATATTGGATTGGTCAGGAATATTTTGTTTATCCAACTCAGCTGCATACCACGTTTATATCGTTAGCTAAATTTTGATTAATCTTAGTTAAGTGTTTGACTATGTATCCTTTAAAGAGTAAACGTGGTTTCTCATATTCAAATCGAAGATTTAACTCACGTAATATTGTGTTTAACCGTCCAGTTTCTGGTAAGAGACATGATGGAAAGCGTCGGGGAGGTAATTTCGTGAAGCCCAATGATGAGCCCAAGATGTTAGCCCAACGCATACATGAGAATCAGTATGGGCCTGAATTTGTATTGGCCCATAACTCAGCTATCTCCACATTTATTCCAGTTATCCATCTTGGGCAAGTCCCGAAGCCCAGTCGAAGTAGGTCCTATATCAAGTTGAAACGTCTCCGTTTCAAAGGGACTGTGAAGATTGAGCGTGTTCAATCTGATTTGAACATGGATGGTTTTATGCCTAAAGTCGAAGGAGTATTCTCTATGGTTGTTGTTGTGGATCGTAAACCACACCTTGGGCCTTCCGGGTGTTTGCATACATTCGACGAGCTATTTGGTGCAAGGATCAATAGTCATGGCAACCTCACTATTGTACCTTCTCTGAAAGATCGCTTCTACATTAGACATGTGTTCAAGCGAGTGCTCTCAGTTGAGAAGGATACGTTGATGGTGGACGTTGAAGGATCCACAACACTCTCTAACAGGCGTTACAACTGCTGGTCTACGTTTAAAGACCTTGATCGTGAATCATGCAAGGGTGTTTATGATAACATTAGCAAGAACGCCTTGTTAGTTTATTATTGCTGGATGTCTGACACGCCTGCGAATGCATCATCTTTTGTATCTTTTGATCTTGATTATATTGGTTAAATAACGAAGTGTGTTTGACTAAAGATGATTAACATAAATGAAAATGTAAAAATAAAATTTTATTTTAATGATTTCGTCTGAGACGCCTTACAATTACTATTAATACATTCATGGACCGTAGTCCGTATTAATTCGTTCAACTGACCCATAGACATTGTAATGTTGGACTCTGCTTTCTGGGCCCCCACAATAGAAGCAGACTCTCCCGGGTCCAGTATGCCTGTTCCTAGCCTGTTTAGATGTCTGTACGGGTGGAGTTCGTTCTCCACTTCTGAGTCTGCATCTGAATGCCCTATGCCTATTGTACTCCTTGAAGCCCATGACTCACCAGGCCTGATCTCAATTGGGCCTCTAAGCCCAAGTCTGGACATAGACGCGCATCTAATGGGCTTCCTCTCCCATTTACCGTAATCCACATGGGAAAAGTCCACATCTTTATCTGTGAACTGTTTGGACAGGATTTTTACTGTTGGTGCCCGGAAGGGAATGTCTACTGAGTGTTTTGCTGTGGACAATTTCAGCTTCCCCTTAAACTTGGCGAAGTGGGTCCGTTGATGAACATTCGTATCGCAAACCCTGTAATACAATTTCCATGGAATTGGGTCTTTCAAGGAGAAGAAGGAAGCTGAGAAATAGTGGAGATCTATGTTGCACCTGATCGGAAATGTCCATGATGCCTGTAAAGACTCATTCTCCGTCATCCTTTTGTCGTGAATCTCCACTATTACCGACCCAGTGGCGTTTATTGGTACTTGTTGTCTGTACTCTATGACGCAGTGGTCGATTTTCATGCAGCTACGGCTGAGCCTAGCGGTTAACTGCGACGCCGTGGACGGAAACTGCAGTATTATCTCAGTTAGGTCATGAGAAAGCTGATATTCGTCACGGTGTGACTCTATGTAGTTGAATGCACTAGGAGGATTAACTAACTGAGAATCCATATAATGAAAATAAGGCCGCGCAGCGGCAGTGATTGCTGAAGTTGAATCAGAAAGAAGTCGAACAAGCTATGAAACGGCAGTTTCGAACTCGAAGAAGATATACAGCCAACTATATTTTCTTTTTTCCGAATTCATGCTGTGCTGAATATAAAGTTTATGAAGAGCGGAAATGAAAAAAGTAGATCAGGAGTCGAAGTGTTAGAGAAAGAAAAGAAATACGAAAAGAGAATTTTGGAGAAATTTGAGTAAGAAGGAATTTGTATATGAACTAAGAAACCTAGGGTTGATGGGTATTTAAATGGTAAAGTGTTCATCCCATGAGATGGA
Gene Information
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NCBI Accession
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NP_047249.1
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Location
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1523-2601,1-7 |
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Gene Name
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AL1 |
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Protein Name
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replicative protein |
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Coding Region
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ATGCCCCCACCAAAGAAATTTAGAGTTCAGTCAAAGAACTATTTCCTAACTTATCCCCAGTGCTCTCTATCTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAATACCCCAGTCAACAAGAAATTCATCAAAATTTGCAGAGAGCTTCATGAAAATGGGGAACCTCATCTCCATGTGCTTGTTCAGTTCGAAGGTAAGTACCAATGCACGAATAACAGATTCTTCGACCTGGTCTCCCCAACCCGGTCAGCACATTTCCATCCGAATATTCAGGGAGCTAAATCGAGCTCCGACGTCAAATCATACATCGACAAGGACGGAGATACAATCGAATGGGGAGATTTCCAAATCGACGGCAGATCTGCCAGAGGAGGCCAGCAGTCTGCTAATGATTCATATGCGAAAGCATTAAATGCAGGTTCGGTTCAATCTGCCTTAGCGGTTCTAAGGGAAGAACAACCAAAAGATTTTGTATTACAAAATCATAACATCCGCTCTAACCTAGAACGAATATTCGCAAAGGCTCCGGAACCGTGGGTTCCTCCATTTCAAGTCTCTTCTTTCACTAACGTTCCTGACGAGATGCAGGAATGGGCGGATAATTATTTCGGGACGGGTGACGCTGCGCCGCCGGATAGACCTGTAAGTATCATCGTCGAGGGTGATTCAAGAACAGGGAAGACGATGTGGGCGCGTGCGTTAGGCCCACATAACTATCTCAGTGGACACCTAGACTTCAATGGTCGAGTCTTCTCGAATGATGTGCAGTATAACGTCATTGATGACATCGCACCGCATTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGGCCCAGAAAGATTGGCAATCAAATTGCAAGTACGGTAAGCCAGTTCAAATTAAAGGCGGAATCCCAGCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGAGTTCTTAGACAAAGCAGAAAATACAGGTCTCAAGAACTGGACTATCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAGAGCACACAGGCAAGCCAAGAAACGGGCAATCAGAAGGCGCAGGGTTGA |
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Protein Sequence
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MPPPKKFRVQSKNYFLTYPQCSLSKEEALSQLQNLNTPVNKKFIKICRELHENGEPHLHVLVQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGDFQIDGRSARGGQQSANDSYAKALNAGSVQSALAVLREEQPKDFVLQNHNIRSNLERIFAKAPEPWVPPFQVSSFTNVPDEMQEWADNYFGTGDAAPPDRPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNGRVFSNDVQYNVIDDIAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKEFLDKAENTGLKNWTIKNAIFITLTAPLYQESTQASQETGNQKAQG |
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NCBI Accession
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NP_047250.1
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Location
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325-1080 |
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Gene Name
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AR1 |
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Protein Name
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coat protein |
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Coding Region
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ATGCCTAAGCGTGATTTGCCATGGCGATCGATGGCGGGAACCTCAAAGGTTAGCCGCAATGCTAATTATTCTCCCCGTGCAGGTATTGGGCCAAGAATTAACAAGGCCGCTGAATGGGTGAACCGGCCCATGTACAGGAAGCCCAGGATGTATCGGACTCTTAGGACAACTGACGTCGCCAGGGGCTGTGAAGGCCCATGTAAGGTCCAGTCTTTCGAACAGCGCCATGACATCTCACATATCGGTAAGGTCATGTGCATATCCGATGTGACTCGTGGTAATGGCATAACCCACCGTGTTGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTTGGTAAGATTTGGATGGATGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTAAGAGATCGTAGACCCTATGGTACTCCAATGGACATTTGGACAGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCTACTGTCAAAAACGATCTACGCGATCGTTACCAGGTCATGCATAAGTTCTATGGCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTTAAGAGGTTCTGGAAGGTCAACAATCATGTAGTCTATAATCATCAAGAGGCTGGCAAGTACGAGAATCACACAGAGAACGCCTTGTTATTGTATATGGCATGCACTCATGCGTCTAACCCTGTATATGCAACTTTGAAAATTCGAATCTATTTTTATGATTCGATCACGAATTAA |
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Protein Sequence
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MPKRDLPWRSMAGTSKVSRNANYSPRAGIGPRINKAAEWVNRPMYRKPRMYRTLRTTDVARGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDIWTVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
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NCBI Accession
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NP_047251.1
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Location
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1077-1475 |
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Gene Name
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AL3 |
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Protein Name
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AL3 protein |
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Coding Region
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ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGCTAGAAAATCCCCTTTATTTCAAGATACACAGAGTAGAGGACCCACTGTATACCAGAACGAGGGTATACCACGTACAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTTTGGACGACGTCGATGACAGCTTCTGGATCAATTTATTTAGCTAGATTTAGATATTTAGTCAACATGTATCTAGATCAATTAGGTGTTATTTCAATAAACAATGTAGTTAGAGCTGTACGTTTCGCAACAAACAGAGTGTATGTAAATCATGTATTGGAGAATCATTCAATAAAATTCAAATTTTATTAA |
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Protein Sequence
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MDSRTGELITAHQAENGVYIWELENPLYFKIHRVEDPLYTRTRVYHVQIRFNHNLRKALHLHKAYLNFQVWTTSMTASGSIYLARFRYLVNMYLDQLGVISINNVVRAVRFATNRVYVNHVLENHSIKFKFY |
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NCBI Accession
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NP_047252.1
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Location
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1222-1611 |
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Gene Name
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AL2 |
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Protein Name
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AL2 protein |
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Coding Region
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ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAGAGCACACAGGCAAGCCAAGAAACGGGCAATCAGAAGGCGCAGGGTTGATCTACAGTGCGGGTGCTCCATCTACTTCCACTTAGGCTGTGCGGGACATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGCTAGAAAATCCCCTTTATTTCAAGATACACAGAGTAGAGGACCCACTGTATACCAGAACGAGGGTATACCACGTACAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTTTGGACGACGTCGATGACAGCTTCTGGATCAATTTATTTAGCTAG |
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Protein Sequence
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MRSSSPSQPPSIKRAHRQAKKRAIRRRRVDLQCGCSIYFHLGCAGHGFTHRGTHHCTSGGEWRVYLGARKSPLFQDTQSRGPTVYQNEGIPRTDTVQPQPEESVASPQSLPELPSLDDVDDSFWINLFS |
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NCBI Accession
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NP_047253.1
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Location
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503-1276 |
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Gene Name
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BV1 |
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Protein Name
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nuclear membrane movement protein |
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Coding Region
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ATGTATCCTTTAAAGAGTAAACGTGGTTTCTCATATTCAAATCGAAGATTTAACTCACGTAATATTGTGTTTAACCGTCCAGTTTCTGGTAAGAGACATGATGGAAAGCGTCGGGGAGGTAATTTCGTGAAGCCCAATGATGAGCCCAAGATGTTAGCCCAACGCATACATGAGAATCAGTATGGGCCTGAATTTGTATTGGCCCATAACTCAGCTATCTCCACATTTATTCCAGTTATCCATCTTGGGCAAGTCCCGAAGCCCAGTCGAAGTAGGTCCTATATCAAGTTGAAACGTCTCCGTTTCAAAGGGACTGTGAAGATTGAGCGTGTTCAATCTGATTTGAACATGGATGGTTTTATGCCTAAAGTCGAAGGAGTATTCTCTATGGTTGTTGTTGTGGATCGTAAACCACACCTTGGGCCTTCCGGGTGTTTGCATACATTCGACGAGCTATTTGGTGCAAGGATCAATAGTCATGGCAACCTCACTATTGTACCTTCTCTGAAAGATCGCTTCTACATTAGACATGTGTTCAAGCGAGTGCTCTCAGTTGAGAAGGATACGTTGATGGTGGACGTTGAAGGATCCACAACACTCTCTAACAGGCGTTACAACTGCTGGTCTACGTTTAAAGACCTTGATCGTGAATCATGCAAGGGTGTTTATGATAACATTAGCAAGAACGCCTTGTTAGTTTATTATTGCTGGATGTCTGACACGCCTGCGAATGCATCATCTTTTGTATCTTTTGATCTTGATTATATTGGTTAA |
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Protein Sequence
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MYPLKSKRGFSYSNRRFNSRNIVFNRPVSGKRHDGKRRGGNFVKPNDEPKMLAQRIHENQYGPEFVLAHNSAISTFIPVIHLGQVPKPSRSRSYIKLKRLRFKGTVKIERVQSDLNMDGFMPKVEGVFSMVVVVDRKPHLGPSGCLHTFDELFGARINSHGNLTIVPSLKDRFYIRHVFKRVLSVEKDTLMVDVEGSTTLSNRRYNCWSTFKDLDRESCKGVYDNISKNALLVYYCWMSDTPANASSFVSFDLDYIG |
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NCBI Accession
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NP_047254.1
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Location
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1336-2217 |
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Gene Name
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BC1 |
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Protein Name
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cell-to-cell movement protein |
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Coding Region
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ATGGATTCTCAGTTAGTTAATCCTCCTAGTGCATTCAACTACATAGAGTCACACCGTGACGAATATCAGCTTTCTCATGACCTAACTGAGATAATACTGCAGTTTCCGTCCACGGCGTCGCAGTTAACCGCTAGGCTCAGCCGTAGCTGCATGAAAATCGACCACTGCGTCATAGAGTACAGACAACAAGTACCAATAAACGCCACTGGGTCGGTAATAGTGGAGATTCACGACAAAAGGATGACGGAGAATGAGTCTTTACAGGCATCATGGACATTTCCGATCAGGTGCAACATAGATCTCCACTATTTCTCAGCTTCCTTCTTCTCCTTGAAAGACCCAATTCCATGGAAATTGTATTACAGGGTTTGCGATACGAATGTTCATCAACGGACCCACTTCGCCAAGTTTAAGGGGAAGCTGAAATTGTCCACAGCAAAACACTCAGTAGACATTCCCTTCCGGGCACCAACAGTAAAAATCCTGTCCAAACAGTTCACAGATAAAGATGTGGACTTTTCCCATGTGGATTACGGTAAATGGGAGAGGAAGCCCATTAGATGCGCGTCTATGTCCAGACTTGGGCTTAGAGGCCCAATTGAGATCAGGCCTGGTGAGTCATGGGCTTCAAGGAGTACAATAGGCATAGGGCATTCAGATGCAGACTCAGAAGTGGAGAACGAACTCCACCCGTACAGACATCTAAACAGGCTAGGAACAGGCATACTGGACCCGGGAGAGTCTGCTTCTATTGTGGGGGCCCAGAAAGCAGAGTCCAACATTACAATGTCTATGGGTCAGTTGAACGAATTAATACGGACTACGGTCCATGAATGTATTAATAGTAATTGTAAGGCGTCTCAGACGAAATCATTAAAATAA |
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Protein Sequence
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MDSQLVNPPSAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTENESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKPIRCASMSRLGLRGPIEIRPGESWASRSTIGIGHSDADSEVENELHPYRHLNRLGTGILDPGESASIVGAQKAESNITMSMGQLNELIRTTVHECINSNCKASQTKSLK |