Tomato mottle leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001891035.1
Isolate Brazil
Release date 2016/12/8
Submitter Ferro,M.M.M., Ramos-Sobrinho,R., Silva,J.T., Assuncao,I.P., Lima,G.S.A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_032006
ACCGGATGGCCGCGTGGGTTTTTTTTGACCCGCTCCGTGAATCATTTCTTTGTAATTTACTGTGTGGTCCAGTCACTAAATGACAAATATGACCGTCCAATCAGAAGTGGTCCTGAAAGCCTAATTATTTAAAAATACTTGGTCACTAAGTTTGGTAATCTTTATAAATGGTCCCTCCTTGTATGGTTATACCATCTTTAATTCATAATGCCTAAGCGTGATGCCCCATGGCGCTCAATGGCGGGTACCTCGAAGGTTAGTCGGTCCGCCAATTACTCCCCTCGTGGAGGAATTGGGTCAAAGTCAGACAAGGCCCAGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGATGTATAGAACCCCCGATGTACCAAAGGGATGCGAAGGCCCATGTAAGGTCCAATCTTATGAGCAGCGTCACGATGTCTCTCATACTGGGAAGGTGATGTGTATTTCCGACGTCACTCGTGGTAACGGTATTACCCACCGTGTGGGTAAACGTTTTTGTGTCAAGTCTGTGTATATATTAGGCAAGGTCTGGATGGATGACAACATCAAGTTGAAGAACCACACGAATAGTGTGATGTTCTGGTTAGTTAGGGATAGGAGACCGTATGGTACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCCACGGTGAAGAACGATCTTCGCGATCGTTACCAGGTCCTGCACAGGTTCTATGCCAAGGTTACCGGTGGACAATACGCCAGCAACGAGCAGGCTATTGTCAAGAGGTTCTGGAAGGTCAGCAACCATGTGGTGTACAACCATCAGGAGGCAGGGAAATACGAGAACCATACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAGTTTAAATTTTATTGAATGATCTTCGAGTACATAATTTACATACGGTTTGTCTGTTGCGAACTGAACAGCTCTAATTACATTATTAATAGAAATGACCCCTAAACGATCTAAATACATATTAACTAAATCACTAAACCTATTTAAATAAGTCGTCCCAGAAGCTGTCGTTGACGTCGTCCAGATTTGGAAGTTGAGGAAGCACTTGTGGAGATCCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGAATGTGGTAGATCCTTGTGTTCGTGTGTATCGGGTTCTCTACGTTTGTTATCTTGAAATAGAGGGGATTTTGGACCTCCCAGATAAACGCGCCATTCTGTGCCTGATGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATTGCCGACGCAGTCGATGTGTTGGTATATGGTGCAGCCACAGTTTAGGTCTATGCGCTTGCGTCGAATGACCCTCTTTTTAGCTATCCTGTGCTGTCGTTTTATAGAGGGGGGTGTCGAGGAAGATGAATTTTGCATTGTGCAGTGTCCAGTTTTGGAGGGATGTGTTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGCTTCATCTTTAGATATTGCGGTGTGACGTCATCAATGACGTTGTACTCCGCTTCGTTTGAGTAAACCCTAGAATTAAAATCAAGGTGTCCACTTAAATAGTTATGTGGGCCTAATACACGCGCCCACATCGTCTTCCCCGTCCTTGAGTCACCCTCGATGATTATACTAATAGGTCTCTCCGGCCGCGCAGCGGGATCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAACCTCTGTAAAGGAGGAGAGGGGAAACGGAGGAACCCATGGTTCCGGAGCCTTCTGAAAAATACGTTCTAAATTAGAACGTATGTTGTGTTGTTGAAGGACGAAGTCTTTCGGTTGCTCCTCCCTTAATATATTGAGGGCCTCCATGACGGATCCTGCGTTGAGGACCTTGGCATACGTGTCGTTGGCAGATTGCTGACCTCCTCGAGCTGATCTGCCGTCGATCTGGAAAACTCCATGATCAATGAAGTCTCCGTCTTTCTCCATATAGGTTTTGACGTCAGATGAGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGATCTGGTTGGGGATACCATGTCGAAGAATCTACAGTTTGTGCATCTGTATTTTCCTTCGAATTGGATGAGCACGTGGAGATGAGGTTCCCCATCTTCGTGGAGTTCTCGAGTTATTCGGATGAACTTTATGTTGGTAGGTGTTTTTAGAGCTAACAATTGGGAAAGTGCTTCTTCCTTGGATAAAGAGCAATGTGGATATGTTATAAAATAATTCTTAGAATTAATAAGAAATTTTTTGGGGAGTGGCATTTTTGTAATAAGATGTTGATCACCGATTGGGGTCTGTCTAAAACTCTACTGCAATCGGTGATTTGGGTACACTTATATACTAGAAGCCTCTATAGAACTATTAATCCTCATCGCACACGTGGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009325934.1
Location 208-963
Gene Name CP
Protein Name Coat protein
Coding Region ATGCCTAAGCGTGATGCCCCATGGCGCTCAATGGCGGGTACCTCGAAGGTTAGTCGGTCCGCCAATTACTCCCCTCGTGGAGGAATTGGGTCAAAGTCAGACAAGGCCCAGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGATGTATAGAACCCCCGATGTACCAAAGGGATGCGAAGGCCCATGTAAGGTCCAATCTTATGAGCAGCGTCACGATGTCTCTCATACTGGGAAGGTGATGTGTATTTCCGACGTCACTCGTGGTAACGGTATTACCCACCGTGTGGGTAAACGTTTTTGTGTCAAGTCTGTGTATATATTAGGCAAGGTCTGGATGGATGACAACATCAAGTTGAAGAACCACACGAATAGTGTGATGTTCTGGTTAGTTAGGGATAGGAGACCGTATGGTACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCCACGGTGAAGAACGATCTTCGCGATCGTTACCAGGTCCTGCACAGGTTCTATGCCAAGGTTACCGGTGGACAATACGCCAGCAACGAGCAGGCTATTGTCAAGAGGTTCTGGAAGGTCAGCAACCATGTGGTGTACAACCATCAGGAGGCAGGGAAATACGAGAACCATACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA
Protein Sequence MPKRDAPWRSMAGTSKVSRSANYSPRGGIGSKSDKAQAWVNRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSYEQRHDVSHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLHRFYAKVTGGQYASNEQAIVKRFWKVSNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009325935.1
Location 960-1358
Gene Name REN
Protein Name Replication-enhancer protein
Coding Region ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAGGTTTAGTGATTTAGTTAATATGTATTTAGATCGTTTAGGGGTCATTTCTATTAATAATGTAATTAGAGCTGTTCAGTTCGCAACAGACAAACCGTATGTAAATTATGTACTCGAAGATCATTCAATAAAATTTAAACTTTATTAA
Protein Sequence MDSRTGELITAHQAQNGAFIWEVQNPLYFKITNVENPIHTNTRIYHIQIRFNHNLRRALDLHKCFLNFQIWTTSTTASGTTYLNRFSDLVNMYLDRLGVISINNVIRAVQFATDKPYVNYVLEDHSIKFKLY

NCBI Accession YP_009325936.1
Location 1105-1494
Gene Name TRAP
Protein Name Transactivating protein
Coding Region ATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAAAAAGAGGGTCATTCGACGCAAGCGCATAGACCTAAACTGTGGCTGCACCATATACCAACACATCGACTGCGTCGGCAATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAG
Protein Sequence MQNSSSSTPPSIKRQHRIAKKRVIRRKRIDLNCGCTIYQHIDCVGNGFTHRGTHHCTSGTEWRVYLGGPKSPLFQDNKRREPDTHEHKDLPHSDTVQPQPEESVGSPQVLPQLPNLDDVNDSFWDDLFK

NCBI Accession YP_009325937.1
Location 1436-2491
Gene Name REP
Protein Name Replication-associated protein
Coding Region ATGCCACTCCCCAAAAAATTTCTTATTAATTCTAAGAATTATTTTATAACATATCCACATTGCTCTTTATCCAAGGAAGAAGCACTTTCCCAATTGTTAGCTCTAAAAACACCTACCAACATAAAGTTCATCCGAATAACTCGAGAACTCCACGAAGATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAAGGGAGGAGCAACCGAAAGACTTCGTCCTTCAACAACACAACATACGTTCTAATTTAGAACGTATTTTTCAGAAGGCTCCGGAACCATGGGTTCCTCCGTTTCCCCTCTCCTCCTTTACAGAGGTTCCGGATGAGATGCAAGAGTGGGCTGATGATTATTTTGGTAGGGATCCCGCTGCGCGGCCGGAGAGACCTATTAGTATAATCATCGAGGGTGACTCAAGGACGGGGAAGACGATGTGGGCGCGTGTATTAGGCCCACATAACTATTTAAGTGGACACCTTGATTTTAATTCTAGGGTTTACTCAAACGAAGCGGAGTACAACGTCATTGATGACGTCACACCGCAATATCTAAAGATGAAGCATTGGAAAGAGCTCATTGGGGCCCAACGGGACTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCATCAATCGTGCTCTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTTTCTCGACAAAGAGGAAAACACATCCCTCCAAAACTGGACACTGCACAATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAA
Protein Sequence MPLPKKFLINSKNYFITYPHCSLSKEEALSQLLALKTPTNIKFIRITRELHEDGEPHLHVLIQFEGKYRCTNCRFFDMVSPTRSTHFHPNVQGAKSSSDVKTYMEKDGDFIDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQQHNIRSNLERIFQKAPEPWVPPFPLSSFTEVPDEMQEWADDYFGRDPAARPERPISIIIEGDSRTGKTMWARVLGPHNYLSGHLDFNSRVYSNEAEYNVIDDVTPQYLKMKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENTSLQNWTLHNAKFIFLDTPLYKTTAQDS

NCBI Accession YP_009325938.1
Location 2041-2334
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAA
Protein Sequence MGNLISTCSSNSKENTDAQTVDSSTWYPQPDQHISIRTFRELNPHLTSKPIWRKTETSLIMEFSRSTADQLEEVSNLPTTRMPRSSTQDPSWRPSIY

References More References in PubMed

1

How To Be a Successful Monopartite Begomovirus in a Bipartite-Dominated World: Emergence and Spread of Tomato Mottle Leaf Curl Virus in Brazil.

Souza JO, et al.  J Virol. 2022 Sep 28;96(18):e0072522. doi: 10.1128/jvi.00725-22. Epub 2022 Aug 31.

PMID: 36043875
2

Characterization of tomato leaf curl purple vein virus, a new monopartite New World begomovirus infecting tomato in Northeast Brazil.

Macedo MA, et al.  Arch Virol. 2018 Mar;163(3):737-743. doi: 10.1007/s00705-017-3662-0. Epub 2017 Dec 9.

PMID: 29224131
3

First Report of Tomato yellow leaf curl virus in Venezuela.

Zambrano K, et al.  Plant Dis. 2007 Jun;91(6):768. doi: 10.1094/PDIS-91-6-0768A.

PMID: 30780492
4

Ty-6, a major begomovirus resistance gene on chromosome 10, is effective against Tomato yellow leaf curl virus and Tomato mottle virus.

Gill U, et al.  Theor Appl Genet. 2019 May;132(5):1543-1554. doi: 10.1007/s00122-019-03298-0. Epub 2019 Feb 13.

PMID: 30758531
5

Molecular characterization and infectivity analysis of tomato leaf curl New Delhi virus isolates infecting potato.

Jeevalatha A, et al.  3 Biotech. 2021 Apr;11(4):203. doi: 10.1007/s13205-021-02752-5. Epub 2021 Mar 30.

PMID: 33927993
6

First Report of Tomato yellow leaf curl virus in Tomato in Costa Rica.

Barboza N, et al.  Plant Dis. 2014 May;98(5):699. doi: 10.1094/PDIS-08-13-0881-PDN.

PMID: 30708517
7

Molecular investigations reveal bitter gourd crop is more susceptible to tomato leaf curl New Delhi virus infection in diverse crop cultivation practices.

Kiran GVNSM, et al.  3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17.

PMID: 34881163
8

Characterization of a novel recombinant begomovirus and tomato leaf curl Kunene virus infecting bottle gourd in Kenya.

Ringeera KH, et al.  Mol Biol Rep. 2025 Sep 13;52(1):901. doi: 10.1007/s11033-025-11020-1.

PMID: 40944776
9

Identification of Tomato yellow leaf curl virus and Tomato mottle virus in Two Counties in Alabama.

Akad F, et al.  Plant Dis. 2007 Jul;91(7):906. doi: 10.1094/PDIS-91-7-0906C.

PMID: 30780409
10

First Report of Tomato Yellow Leaf Curl Geminivirus in Yucatan, Mexico.

Ascencio-Ibáñez JT, et al.  Plant Dis. 1999 Dec;83(12):1178. doi: 10.1094/PDIS.1999.83.12.1178A.

PMID: 30841154