Tomato mottle leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001891035.1 |
| Isolate |
Brazil |
| Release date |
2016/12/8 |
| Submitter |
Ferro,M.M.M., Ramos-Sobrinho,R., Silva,J.T., Assuncao,I.P., Lima,G.S.A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGTGGGTTTTTTTTGACCCGCTCCGTGAATCATTTCTTTGTAATTTACTGTGTGGTCCAGTCACTAAATGACAAATATGACCGTCCAATCAGAAGTGGTCCTGAAAGCCTAATTATTTAAAAATACTTGGTCACTAAGTTTGGTAATCTTTATAAATGGTCCCTCCTTGTATGGTTATACCATCTTTAATTCATAATGCCTAAGCGTGATGCCCCATGGCGCTCAATGGCGGGTACCTCGAAGGTTAGTCGGTCCGCCAATTACTCCCCTCGTGGAGGAATTGGGTCAAAGTCAGACAAGGCCCAGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGATGTATAGAACCCCCGATGTACCAAAGGGATGCGAAGGCCCATGTAAGGTCCAATCTTATGAGCAGCGTCACGATGTCTCTCATACTGGGAAGGTGATGTGTATTTCCGACGTCACTCGTGGTAACGGTATTACCCACCGTGTGGGTAAACGTTTTTGTGTCAAGTCTGTGTATATATTAGGCAAGGTCTGGATGGATGACAACATCAAGTTGAAGAACCACACGAATAGTGTGATGTTCTGGTTAGTTAGGGATAGGAGACCGTATGGTACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCCACGGTGAAGAACGATCTTCGCGATCGTTACCAGGTCCTGCACAGGTTCTATGCCAAGGTTACCGGTGGACAATACGCCAGCAACGAGCAGGCTATTGTCAAGAGGTTCTGGAAGGTCAGCAACCATGTGGTGTACAACCATCAGGAGGCAGGGAAATACGAGAACCATACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAGTTTAAATTTTATTGAATGATCTTCGAGTACATAATTTACATACGGTTTGTCTGTTGCGAACTGAACAGCTCTAATTACATTATTAATAGAAATGACCCCTAAACGATCTAAATACATATTAACTAAATCACTAAACCTATTTAAATAAGTCGTCCCAGAAGCTGTCGTTGACGTCGTCCAGATTTGGAAGTTGAGGAAGCACTTGTGGAGATCCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGAATGTGGTAGATCCTTGTGTTCGTGTGTATCGGGTTCTCTACGTTTGTTATCTTGAAATAGAGGGGATTTTGGACCTCCCAGATAAACGCGCCATTCTGTGCCTGATGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATTGCCGACGCAGTCGATGTGTTGGTATATGGTGCAGCCACAGTTTAGGTCTATGCGCTTGCGTCGAATGACCCTCTTTTTAGCTATCCTGTGCTGTCGTTTTATAGAGGGGGGTGTCGAGGAAGATGAATTTTGCATTGTGCAGTGTCCAGTTTTGGAGGGATGTGTTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGCTTCATCTTTAGATATTGCGGTGTGACGTCATCAATGACGTTGTACTCCGCTTCGTTTGAGTAAACCCTAGAATTAAAATCAAGGTGTCCACTTAAATAGTTATGTGGGCCTAATACACGCGCCCACATCGTCTTCCCCGTCCTTGAGTCACCCTCGATGATTATACTAATAGGTCTCTCCGGCCGCGCAGCGGGATCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAACCTCTGTAAAGGAGGAGAGGGGAAACGGAGGAACCCATGGTTCCGGAGCCTTCTGAAAAATACGTTCTAAATTAGAACGTATGTTGTGTTGTTGAAGGACGAAGTCTTTCGGTTGCTCCTCCCTTAATATATTGAGGGCCTCCATGACGGATCCTGCGTTGAGGACCTTGGCATACGTGTCGTTGGCAGATTGCTGACCTCCTCGAGCTGATCTGCCGTCGATCTGGAAAACTCCATGATCAATGAAGTCTCCGTCTTTCTCCATATAGGTTTTGACGTCAGATGAGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGATCTGGTTGGGGATACCATGTCGAAGAATCTACAGTTTGTGCATCTGTATTTTCCTTCGAATTGGATGAGCACGTGGAGATGAGGTTCCCCATCTTCGTGGAGTTCTCGAGTTATTCGGATGAACTTTATGTTGGTAGGTGTTTTTAGAGCTAACAATTGGGAAAGTGCTTCTTCCTTGGATAAAGAGCAATGTGGATATGTTATAAAATAATTCTTAGAATTAATAAGAAATTTTTTGGGGAGTGGCATTTTTGTAATAAGATGTTGATCACCGATTGGGGTCTGTCTAAAACTCTACTGCAATCGGTGATTTGGGTACACTTATATACTAGAAGCCTCTATAGAACTATTAATCCTCATCGCACACGTGGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009325934.1
|
|
Location
|
208-963 |
|
Gene Name
|
CP |
|
Protein Name
|
Coat protein |
|
Coding Region
|
ATGCCTAAGCGTGATGCCCCATGGCGCTCAATGGCGGGTACCTCGAAGGTTAGTCGGTCCGCCAATTACTCCCCTCGTGGAGGAATTGGGTCAAAGTCAGACAAGGCCCAGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGATGTATAGAACCCCCGATGTACCAAAGGGATGCGAAGGCCCATGTAAGGTCCAATCTTATGAGCAGCGTCACGATGTCTCTCATACTGGGAAGGTGATGTGTATTTCCGACGTCACTCGTGGTAACGGTATTACCCACCGTGTGGGTAAACGTTTTTGTGTCAAGTCTGTGTATATATTAGGCAAGGTCTGGATGGATGACAACATCAAGTTGAAGAACCACACGAATAGTGTGATGTTCTGGTTAGTTAGGGATAGGAGACCGTATGGTACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCCACGGTGAAGAACGATCTTCGCGATCGTTACCAGGTCCTGCACAGGTTCTATGCCAAGGTTACCGGTGGACAATACGCCAGCAACGAGCAGGCTATTGTCAAGAGGTTCTGGAAGGTCAGCAACCATGTGGTGTACAACCATCAGGAGGCAGGGAAATACGAGAACCATACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
|
Protein Sequence
|
MPKRDAPWRSMAGTSKVSRSANYSPRGGIGSKSDKAQAWVNRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSYEQRHDVSHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLHRFYAKVTGGQYASNEQAIVKRFWKVSNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
|
NCBI Accession
|
YP_009325935.1
|
|
Location
|
960-1358 |
|
Gene Name
|
REN |
|
Protein Name
|
Replication-enhancer protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAGGTTTAGTGATTTAGTTAATATGTATTTAGATCGTTTAGGGGTCATTTCTATTAATAATGTAATTAGAGCTGTTCAGTTCGCAACAGACAAACCGTATGTAAATTATGTACTCGAAGATCATTCAATAAAATTTAAACTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAHQAQNGAFIWEVQNPLYFKITNVENPIHTNTRIYHIQIRFNHNLRRALDLHKCFLNFQIWTTSTTASGTTYLNRFSDLVNMYLDRLGVISINNVIRAVQFATDKPYVNYVLEDHSIKFKLY |
|
NCBI Accession
|
YP_009325936.1
|
|
Location
|
1105-1494 |
|
Gene Name
|
TRAP |
|
Protein Name
|
Transactivating protein |
|
Coding Region
|
ATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAAAAAGAGGGTCATTCGACGCAAGCGCATAGACCTAAACTGTGGCTGCACCATATACCAACACATCGACTGCGTCGGCAATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAG |
|
Protein Sequence
|
MQNSSSSTPPSIKRQHRIAKKRVIRRKRIDLNCGCTIYQHIDCVGNGFTHRGTHHCTSGTEWRVYLGGPKSPLFQDNKRREPDTHEHKDLPHSDTVQPQPEESVGSPQVLPQLPNLDDVNDSFWDDLFK |
|
NCBI Accession
|
YP_009325937.1
|
|
Location
|
1436-2491 |
|
Gene Name
|
REP |
|
Protein Name
|
Replication-associated protein |
|
Coding Region
|
ATGCCACTCCCCAAAAAATTTCTTATTAATTCTAAGAATTATTTTATAACATATCCACATTGCTCTTTATCCAAGGAAGAAGCACTTTCCCAATTGTTAGCTCTAAAAACACCTACCAACATAAAGTTCATCCGAATAACTCGAGAACTCCACGAAGATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAAGGGAGGAGCAACCGAAAGACTTCGTCCTTCAACAACACAACATACGTTCTAATTTAGAACGTATTTTTCAGAAGGCTCCGGAACCATGGGTTCCTCCGTTTCCCCTCTCCTCCTTTACAGAGGTTCCGGATGAGATGCAAGAGTGGGCTGATGATTATTTTGGTAGGGATCCCGCTGCGCGGCCGGAGAGACCTATTAGTATAATCATCGAGGGTGACTCAAGGACGGGGAAGACGATGTGGGCGCGTGTATTAGGCCCACATAACTATTTAAGTGGACACCTTGATTTTAATTCTAGGGTTTACTCAAACGAAGCGGAGTACAACGTCATTGATGACGTCACACCGCAATATCTAAAGATGAAGCATTGGAAAGAGCTCATTGGGGCCCAACGGGACTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCATCAATCGTGCTCTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTTTCTCGACAAAGAGGAAAACACATCCCTCCAAAACTGGACACTGCACAATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAA |
|
Protein Sequence
|
MPLPKKFLINSKNYFITYPHCSLSKEEALSQLLALKTPTNIKFIRITRELHEDGEPHLHVLIQFEGKYRCTNCRFFDMVSPTRSTHFHPNVQGAKSSSDVKTYMEKDGDFIDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQQHNIRSNLERIFQKAPEPWVPPFPLSSFTEVPDEMQEWADDYFGRDPAARPERPISIIIEGDSRTGKTMWARVLGPHNYLSGHLDFNSRVYSNEAEYNVIDDVTPQYLKMKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENTSLQNWTLHNAKFIFLDTPLYKTTAQDS |
|
NCBI Accession
|
YP_009325938.1
|
|
Location
|
2041-2334 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAA |
|
Protein Sequence
|
MGNLISTCSSNSKENTDAQTVDSSTWYPQPDQHISIRTFRELNPHLTSKPIWRKTETSLIMEFSRSTADQLEEVSNLPTTRMPRSSTQDPSWRPSIY |