Tomato mottle leaf curl virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_001891035.1 |
| Isolate | Brazil |
| Release date | 2016/12/8 |
| Submitter | Ferro,M.M.M., Ramos-Sobrinho,R., Silva,J.T., Assuncao,I.P., Lima,G.S.A. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_032006
Gene Information
| NCBI Accession | YP_009325934.1 |
|---|---|
| Location | 208-963 |
| Gene Name | CP |
| Protein Name | Coat protein |
| Coding Region | ATGCCTAAGCGTGATGCCCCATGGCGCTCAATGGCGGGTACCTCGAAGGTTAGTCGGTCCGCCAATTACTCCCCTCGTGGAGGAATTGGGTCAAAGTCAGACAAGGCCCAGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGATGTATAGAACCCCCGATGTACCAAAGGGATGCGAAGGCCCATGTAAGGTCCAATCTTATGAGCAGCGTCACGATGTCTCTCATACTGGGAAGGTGATGTGTATTTCCGACGTCACTCGTGGTAACGGTATTACCCACCGTGTGGGTAAACGTTTTTGTGTCAAGTCTGTGTATATATTAGGCAAGGTCTGGATGGATGACAACATCAAGTTGAAGAACCACACGAATAGTGTGATGTTCTGGTTAGTTAGGGATAGGAGACCGTATGGTACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCCACGGTGAAGAACGATCTTCGCGATCGTTACCAGGTCCTGCACAGGTTCTATGCCAAGGTTACCGGTGGACAATACGCCAGCAACGAGCAGGCTATTGTCAAGAGGTTCTGGAAGGTCAGCAACCATGTGGTGTACAACCATCAGGAGGCAGGGAAATACGAGAACCATACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
| Protein Sequence | MPKRDAPWRSMAGTSKVSRSANYSPRGGIGSKSDKAQAWVNRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSYEQRHDVSHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLHRFYAKVTGGQYASNEQAIVKRFWKVSNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
| NCBI Accession | YP_009325935.1 |
|---|---|
| Location | 960-1358 |
| Gene Name | REN |
| Protein Name | Replication-enhancer protein |
| Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAGGTTTAGTGATTTAGTTAATATGTATTTAGATCGTTTAGGGGTCATTTCTATTAATAATGTAATTAGAGCTGTTCAGTTCGCAACAGACAAACCGTATGTAAATTATGTACTCGAAGATCATTCAATAAAATTTAAACTTTATTAA |
| Protein Sequence | MDSRTGELITAHQAQNGAFIWEVQNPLYFKITNVENPIHTNTRIYHIQIRFNHNLRRALDLHKCFLNFQIWTTSTTASGTTYLNRFSDLVNMYLDRLGVISINNVIRAVQFATDKPYVNYVLEDHSIKFKLY |
| NCBI Accession | YP_009325936.1 |
|---|---|
| Location | 1105-1494 |
| Gene Name | TRAP |
| Protein Name | Transactivating protein |
| Coding Region | ATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAAAAAGAGGGTCATTCGACGCAAGCGCATAGACCTAAACTGTGGCTGCACCATATACCAACACATCGACTGCGTCGGCAATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAG |
| Protein Sequence | MQNSSSSTPPSIKRQHRIAKKRVIRRKRIDLNCGCTIYQHIDCVGNGFTHRGTHHCTSGTEWRVYLGGPKSPLFQDNKRREPDTHEHKDLPHSDTVQPQPEESVGSPQVLPQLPNLDDVNDSFWDDLFK |
| NCBI Accession | YP_009325937.1 |
|---|---|
| Location | 1436-2491 |
| Gene Name | REP |
| Protein Name | Replication-associated protein |
| Coding Region | ATGCCACTCCCCAAAAAATTTCTTATTAATTCTAAGAATTATTTTATAACATATCCACATTGCTCTTTATCCAAGGAAGAAGCACTTTCCCAATTGTTAGCTCTAAAAACACCTACCAACATAAAGTTCATCCGAATAACTCGAGAACTCCACGAAGATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAAGGGAGGAGCAACCGAAAGACTTCGTCCTTCAACAACACAACATACGTTCTAATTTAGAACGTATTTTTCAGAAGGCTCCGGAACCATGGGTTCCTCCGTTTCCCCTCTCCTCCTTTACAGAGGTTCCGGATGAGATGCAAGAGTGGGCTGATGATTATTTTGGTAGGGATCCCGCTGCGCGGCCGGAGAGACCTATTAGTATAATCATCGAGGGTGACTCAAGGACGGGGAAGACGATGTGGGCGCGTGTATTAGGCCCACATAACTATTTAAGTGGACACCTTGATTTTAATTCTAGGGTTTACTCAAACGAAGCGGAGTACAACGTCATTGATGACGTCACACCGCAATATCTAAAGATGAAGCATTGGAAAGAGCTCATTGGGGCCCAACGGGACTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCATCAATCGTGCTCTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTTTCTCGACAAAGAGGAAAACACATCCCTCCAAAACTGGACACTGCACAATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAA |
| Protein Sequence | MPLPKKFLINSKNYFITYPHCSLSKEEALSQLLALKTPTNIKFIRITRELHEDGEPHLHVLIQFEGKYRCTNCRFFDMVSPTRSTHFHPNVQGAKSSSDVKTYMEKDGDFIDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQQHNIRSNLERIFQKAPEPWVPPFPLSSFTEVPDEMQEWADDYFGRDPAARPERPISIIIEGDSRTGKTMWARVLGPHNYLSGHLDFNSRVYSNEAEYNVIDDVTPQYLKMKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENTSLQNWTLHNAKFIFLDTPLYKTTAQDS |
| NCBI Accession | YP_009325938.1 |
|---|---|
| Location | 2041-2334 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAA |
| Protein Sequence | MGNLISTCSSNSKENTDAQTVDSSTWYPQPDQHISIRTFRELNPHLTSKPIWRKTETSLIMEFSRSTADQLEEVSNLPTTRMPRSSTQDPSWRPSIY |
References More References in PubMed
| 1 |
Souza JO, et al. J Virol. 2022 Sep 28;96(18):e0072522. doi: 10.1128/jvi.00725-22. Epub 2022 Aug 31. PMID: 36043875 |
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| 2 |
Gill U, et al. Theor Appl Genet. 2019 May;132(5):1543-1554. doi: 10.1007/s00122-019-03298-0. Epub 2019 Feb 13. PMID: 30758531 |
| 3 |
First Report of Tomato yellow leaf curl virus in Tomato in Costa Rica. Barboza N, et al. Plant Dis. 2014 May;98(5):699. doi: 10.1094/PDIS-08-13-0881-PDN. PMID: 30708517 |
| 4 |
Introduction of the Exotic Tomato yellow leaf curl virus-Israel in Tomato to Puerto Rico. Bird J, et al. Plant Dis. 2001 Sep;85(9):1028. doi: 10.1094/PDIS.2001.85.9.1028B. PMID: 30823090 |
| 5 |
Identification of Tomato yellow leaf curl virus and Tomato mottle virus in Two Counties in Alabama. Akad F, et al. Plant Dis. 2007 Jul;91(7):906. doi: 10.1094/PDIS-91-7-0906C. PMID: 30780409 |
| 6 |
Macedo MA, et al. Arch Virol. 2018 Mar;163(3):737-743. doi: 10.1007/s00705-017-3662-0. Epub 2017 Dec 9. PMID: 29224131 |
| 7 |
Nava A, et al. Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14. PMID: 23064695 |
| 8 |
First Report of Tomato Yellow Leaf Curl Geminivirus in Yucatan, Mexico. Ascencio-Ibáñez JT, et al. Plant Dis. 1999 Dec;83(12):1178. doi: 10.1094/PDIS.1999.83.12.1178A. PMID: 30841154 |
| 9 |
Fine mapping of the tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato. Yang X, et al. Mol Breed. 2014;34(2):749-760. doi: 10.1007/s11032-014-0072-9. Epub 2014 Mar 28. PMID: 25076841 |
| 10 |
First Report of Tomato yellow leaf curl virus in Venezuela. Zambrano K, et al. Plant Dis. 2007 Jun;91(6):768. doi: 10.1094/PDIS-91-6-0768A. PMID: 30780492 |