Tomato mosaic severe dwarf virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_018587715.1 |
| Isolate |
Brazil |
| Release date |
2021/6/1 |
| Submitter |
Alves-Andrade,I., Gilbertson,R.L., Boiteux,L.S., Fonseca,M.E.N., Rojas,M.R., Reis,L.N.A., Pereira-Carvalho,R.C. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTGGTGTCCCGACCCGCGCGCGCCCATTGCGCTGCTTTCTGACGATGGTGGTCCCATGTGTCGCAATTGTTTCGCGTGAAAGCTTATTTATTTCAAAATACTTCGCAGCCAAGTTTGGTAAAGTTGTATATATTGTGTATAGATTGTTGACTGACATTTGCCTTTAATTCAAAATGTCTAAGCGGGCTGCCCCCTCGTGGCGCTCTATGGCGGGTATCTCAAAGGTTAGCCGCTCACTTAATTTCTCGCCTCGTGGAGGTATTAATCCCAAATTTGATAGGGCCTCAGCGTGGGTCAATCGACCCATGTACAGGAAGCCCAGGATATATCGGACTATTCGAAGCCCTGATGTCCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCATTTGAACAGCGCCACGATATCTCCCATACCGGGAAGGTGCTGTGTATATCTGATGTGACACGGGGCAGTGGTATTACCCACCGTGTCGGTAAGCGTTTTTGCGTGAAGTCCGTTTATATTTTAGGCAAGGTATGGATGGACGAGAACATCAAGTTGAAGAACCATACGAACAGCGTCATGTTCTGGTTGGTTAGAGACAGGAGACCCTATGGCACGCCGATGGATTTTGGACAGGTGTTCAACCTGTTTGATAATGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGGGATCGTTTCCAAGTGATGCACAGATTCCACACTAAGGTGACGGGTGGACAGTATGCGAGCAACGAGCAGGCTCTTGTCCGGCGATTTTGGAAGGTCAACACCCATGTTGTGTACAACCATCAGGAAGCTGCGAAGTATGAGAACCACACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACCCTTAAGATCCGGATCTATTTCTACGATTCGGTATCGAATTAATAAAGTTTGAATTTTATTGAATGATCTTCGAGTACAGATGTTACATATGGTCTGTGTGTTGCGAAACGAACAGCTCTAATTACATTATTAATGGATATAACGCCCAAACTATCTAAATAAAACATGATGAAATGTCTAAATCTATCTAAATATGTCGTCCCAGAAGCTGTCACTGAAGTCGTCCAGACTTGGAAGTTCAGGTATGCCTTGTGGAGATCCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGATGTGGTAGACTCTGGTCGTGGTGTAGAGTGGGTCTTCGACTCGGTATATCTTGAAATATAGGGGATTTGGTACTTCCCAGATATACACGCCATTCTCCGCTTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCGACGCAGTTGATGTGGACGTATACTGAGCACCCGCAGTTGAGGTCTATTCGTCTACGTCGAATTGCCCTGCGCTTGGCTGCTCTGTGTTGAGCTTTGATAGAGGGGGGATTCGAGGAAGACGAACCTCGCATTCTTGAGAGTCCAATTTCTTAGGGATGCGTTTTCCTCTTTGTCGAGGAAATATTTATAGCTGGCTCCTTCGCCAGGATTGCAGAGCACGATTGATGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGTCTGCCAGTTGCTTTGGGCCCCAATTAATTCTTTCCAGTGCTTTAACTTTAAATAATGAGGAGGGATGTCATCAATGACGTTGTACTCTGCATTATTGTTGTAAACCCTAGAATTCAAATCAATGTGGCCGCTGATATAATTGTGGACCCCCAATGCTATGGCCCACATCGTCTTCCCCGTCCTCGAATCCCCCTCAATAATTAAACTAATAGGTCTCTCCGGCCGCGCAGCGGAACCCCTTCCAAAATAGTCATCTGCCCATTCCTGCATCTCCGCGGGAACGTTAGTGAACGATGAGAGGGGAAACGGAGGAACCCTCGGTTCAGGAGCTTTTTGGAAGAGACGTTCAATGTTAGCCTTTACGTTATGATAACTTACAACGAACGTCTTGGGGTCTCCTGCTCTGATAATCTCCAGAGCCTCTCCTGCACTAGCTGCATTAACTGCGTTGTGGTAGACGTCGTCTTTATTGGCCTTCGTACCCCCAGACACCTTGTATTGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAATTCTTGACGGCGTTGGTGTCCTTGGCTGCCTGAATATTTGGGTGAAAAGTGGCAGACCTTCTGGGGTGAGTGAGGTCGAAAAATCTAACATCCTTGATGTTAGACTTTCCTGAGAGTTGTATAAGACAATGGAGGTGGGGGAATCCGTCGGAGTGTTCCTCCCTGGCGACTCGTATATATGTGGGTTTGACGATTGACCATGGAAGGGATTGAAGCATTTGAAGAGCTTCATCTTTTGGTATATCGCATTGGGGATATGTGAGGAATATATTTTTGGCAGCAAGCCTAAATTGATTAGGGTTTCGTGGCATTTTGGTAAATATAGGGCAGGACACCAGCAATGGCTCTCAACTTCTATGCAATGTGTTGGTGTCCTGGTGTCCCATTTATACTAAAACCCTCTAGGACACTGGGGGGCACGTGGCGGCCATCCGTTTAATATT
Gene Information
|
NCBI Accession
|
YP_010087802.1
|
|
Location
|
193-951 |
|
Gene Name
|
AV1 |
|
Protein Name
|
Cp |
|
Coding Region
|
ATGTCTAAGCGGGCTGCCCCCTCGTGGCGCTCTATGGCGGGTATCTCAAAGGTTAGCCGCTCACTTAATTTCTCGCCTCGTGGAGGTATTAATCCCAAATTTGATAGGGCCTCAGCGTGGGTCAATCGACCCATGTACAGGAAGCCCAGGATATATCGGACTATTCGAAGCCCTGATGTCCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCATTTGAACAGCGCCACGATATCTCCCATACCGGGAAGGTGCTGTGTATATCTGATGTGACACGGGGCAGTGGTATTACCCACCGTGTCGGTAAGCGTTTTTGCGTGAAGTCCGTTTATATTTTAGGCAAGGTATGGATGGACGAGAACATCAAGTTGAAGAACCATACGAACAGCGTCATGTTCTGGTTGGTTAGAGACAGGAGACCCTATGGCACGCCGATGGATTTTGGACAGGTGTTCAACCTGTTTGATAATGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGGGATCGTTTCCAAGTGATGCACAGATTCCACACTAAGGTGACGGGTGGACAGTATGCGAGCAACGAGCAGGCTCTTGTCCGGCGATTTTGGAAGGTCAACACCCATGTTGTGTACAACCATCAGGAAGCTGCGAAGTATGAGAACCACACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACCCTTAAGATCCGGATCTATTTCTACGATTCGGTATCGAATTAA |
|
Protein Sequence
|
MSKRAAPSWRSMAGISKVSRSLNFSPRGGINPKFDRASAWVNRPMYRKPRIYRTIRSPDVPKGCEGPCKVQSFEQRHDISHTGKVLCISDVTRGSGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKNDLRDRFQVMHRFHTKVTGGQYASNEQALVRRFWKVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
|
NCBI Accession
|
YP_010087803.1
|
|
Location
|
948-1346 |
|
Gene Name
|
AC3 |
|
Protein Name
|
Ren |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAGATTTAGACATTTCATCATGTTTTATTTAGATAGTTTGGGCGTTATATCCATTAATAATGTAATTAGAGCTGTTCGTTTCGCAACACACAGACCATATGTAACATCTGTACTCGAAGATCATTCAATAAAATTCAAACTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVYIWEVPNPLYFKIYRVEDPLYTTTRVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSVTASGTTYLDRFRHFIMFYLDSLGVISINNVIRAVRFATHRPYVTSVLEDHSIKFKLY |
|
NCBI Accession
|
YP_010087804.1
|
|
Location
|
1093-1482 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TRaP |
|
Coding Region
|
ATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAGACGAATAGACCTCAACTGCGGGTGCTCAGTATACGTCCACATCAACTGCGTCGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAG |
|
Protein Sequence
|
MRGSSSSNPPSIKAQHRAAKRRAIRRRRIDLNCGCSVYVHINCVGHGFTHRGTHHCTSSGEWRVYLGSTKSPIFQDIPSRRPTLHHDQSLPHPDTVQPQPQESVGSPQGIPELPSLDDFSDSFWDDIFR |
|
NCBI Accession
|
YP_010087805.1
|
|
Location
|
1403-2503 |
|
Gene Name
|
AC1 |
|
Protein Name
|
REp |
|
Coding Region
|
TTGCTGGTGTCCTGCCCTATATTTACCAAAATGCCACGAAACCCTAATCAATTTAGGCTTGCTGCCAAAAATATATTCCTCACATATCCCCAATGCGATATACCAAAAGATGAAGCTCTTCAAATGCTTCAATCCCTTCCATGGTCAATCGTCAAACCCACATATATACGAGTCGCCAGGGAGGAACACTCCGACGGATTCCCCCACCTCCATTGTCTTATACAACTCTCAGGAAAGTCTAACATCAAGGATGTTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCACTTTTCACCCAAATATTCAGGCAGCCAAGGACACCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACGAAGGCCAATAAAGACGACGTCTACCACAACGCAGTTAATGCAGCTAGTGCAGGAGAGGCTCTGGAGATTATCAGAGCAGGAGACCCCAAGACGTTCGTTGTAAGTTATCATAACGTAAAGGCTAACATTGAACGTCTCTTCCAAAAAGCTCCTGAACCGAGGGTTCCTCCGTTTCCCCTCTCATCGTTCACTAACGTTCCCGCGGAGATGCAGGAATGGGCAGATGACTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTTTAATTATTGAGGGGGATTCGAGGACGGGGAAGACGATGTGGGCCATAGCATTGGGGGTCCACAATTATATCAGCGGCCACATTGATTTGAATTCTAGGGTTTACAACAATAATGCAGAGTACAACGTCATTGATGACATCCCTCCTCATTATTTAAAGTTAAAGCACTGGAAAGAATTAATTGGGGCCCAAAGCAACTGGCAGACAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATACCATCAATCGTGCTCTGCAATCCTGGCGAAGGAGCCAGCTATAAATATTTCCTCGACAAAGAGGAAAACGCATCCCTAAGAAATTGGACTCTCAAGAATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAG |
|
Protein Sequence
|
MLVSCPIFTKMPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQSLPWSIVKPTYIRVAREEHSDGFPHLHCLIQLSGKSNIKDVRFFDLTHPRRSATFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGTKANKDDVYHNAVNAASAGEALEIIRAGDPKTFVVSYHNVKANIERLFQKAPEPRVPPFPLSSFTNVPAEMQEWADDYFGRGSAARPERPISLIIEGDSRTGKTMWAIALGVHNYISGHIDLNSRVYNNNAEYNVIDDIPPHYLKLKHWKELIGAQSNWQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKYFLDKEENASLRNWTLKNARFVFLESPLYQSSTQSSQAQGNST |