Tomato mosaic severe dwarf virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_018587715.1
Isolate Brazil
Release date 2021/6/1
Submitter Alves-Andrade,I., Gilbertson,R.L., Boiteux,L.S., Fonseca,M.E.N., Rojas,M.R., Reis,L.N.A., Pereira-Carvalho,R.C.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055587
ACCGGATGGCCGCGATTTTTTGGTGTCCCGACCCGCGCGCGCCCATTGCGCTGCTTTCTGACGATGGTGGTCCCATGTGTCGCAATTGTTTCGCGTGAAAGCTTATTTATTTCAAAATACTTCGCAGCCAAGTTTGGTAAAGTTGTATATATTGTGTATAGATTGTTGACTGACATTTGCCTTTAATTCAAAATGTCTAAGCGGGCTGCCCCCTCGTGGCGCTCTATGGCGGGTATCTCAAAGGTTAGCCGCTCACTTAATTTCTCGCCTCGTGGAGGTATTAATCCCAAATTTGATAGGGCCTCAGCGTGGGTCAATCGACCCATGTACAGGAAGCCCAGGATATATCGGACTATTCGAAGCCCTGATGTCCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCATTTGAACAGCGCCACGATATCTCCCATACCGGGAAGGTGCTGTGTATATCTGATGTGACACGGGGCAGTGGTATTACCCACCGTGTCGGTAAGCGTTTTTGCGTGAAGTCCGTTTATATTTTAGGCAAGGTATGGATGGACGAGAACATCAAGTTGAAGAACCATACGAACAGCGTCATGTTCTGGTTGGTTAGAGACAGGAGACCCTATGGCACGCCGATGGATTTTGGACAGGTGTTCAACCTGTTTGATAATGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGGGATCGTTTCCAAGTGATGCACAGATTCCACACTAAGGTGACGGGTGGACAGTATGCGAGCAACGAGCAGGCTCTTGTCCGGCGATTTTGGAAGGTCAACACCCATGTTGTGTACAACCATCAGGAAGCTGCGAAGTATGAGAACCACACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACCCTTAAGATCCGGATCTATTTCTACGATTCGGTATCGAATTAATAAAGTTTGAATTTTATTGAATGATCTTCGAGTACAGATGTTACATATGGTCTGTGTGTTGCGAAACGAACAGCTCTAATTACATTATTAATGGATATAACGCCCAAACTATCTAAATAAAACATGATGAAATGTCTAAATCTATCTAAATATGTCGTCCCAGAAGCTGTCACTGAAGTCGTCCAGACTTGGAAGTTCAGGTATGCCTTGTGGAGATCCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGATGTGGTAGACTCTGGTCGTGGTGTAGAGTGGGTCTTCGACTCGGTATATCTTGAAATATAGGGGATTTGGTACTTCCCAGATATACACGCCATTCTCCGCTTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCGACGCAGTTGATGTGGACGTATACTGAGCACCCGCAGTTGAGGTCTATTCGTCTACGTCGAATTGCCCTGCGCTTGGCTGCTCTGTGTTGAGCTTTGATAGAGGGGGGATTCGAGGAAGACGAACCTCGCATTCTTGAGAGTCCAATTTCTTAGGGATGCGTTTTCCTCTTTGTCGAGGAAATATTTATAGCTGGCTCCTTCGCCAGGATTGCAGAGCACGATTGATGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGTCTGCCAGTTGCTTTGGGCCCCAATTAATTCTTTCCAGTGCTTTAACTTTAAATAATGAGGAGGGATGTCATCAATGACGTTGTACTCTGCATTATTGTTGTAAACCCTAGAATTCAAATCAATGTGGCCGCTGATATAATTGTGGACCCCCAATGCTATGGCCCACATCGTCTTCCCCGTCCTCGAATCCCCCTCAATAATTAAACTAATAGGTCTCTCCGGCCGCGCAGCGGAACCCCTTCCAAAATAGTCATCTGCCCATTCCTGCATCTCCGCGGGAACGTTAGTGAACGATGAGAGGGGAAACGGAGGAACCCTCGGTTCAGGAGCTTTTTGGAAGAGACGTTCAATGTTAGCCTTTACGTTATGATAACTTACAACGAACGTCTTGGGGTCTCCTGCTCTGATAATCTCCAGAGCCTCTCCTGCACTAGCTGCATTAACTGCGTTGTGGTAGACGTCGTCTTTATTGGCCTTCGTACCCCCAGACACCTTGTATTGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAATTCTTGACGGCGTTGGTGTCCTTGGCTGCCTGAATATTTGGGTGAAAAGTGGCAGACCTTCTGGGGTGAGTGAGGTCGAAAAATCTAACATCCTTGATGTTAGACTTTCCTGAGAGTTGTATAAGACAATGGAGGTGGGGGAATCCGTCGGAGTGTTCCTCCCTGGCGACTCGTATATATGTGGGTTTGACGATTGACCATGGAAGGGATTGAAGCATTTGAAGAGCTTCATCTTTTGGTATATCGCATTGGGGATATGTGAGGAATATATTTTTGGCAGCAAGCCTAAATTGATTAGGGTTTCGTGGCATTTTGGTAAATATAGGGCAGGACACCAGCAATGGCTCTCAACTTCTATGCAATGTGTTGGTGTCCTGGTGTCCCATTTATACTAAAACCCTCTAGGACACTGGGGGGCACGTGGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_010087802.1
Location 193-951
Gene Name AV1
Protein Name Cp
Coding Region ATGTCTAAGCGGGCTGCCCCCTCGTGGCGCTCTATGGCGGGTATCTCAAAGGTTAGCCGCTCACTTAATTTCTCGCCTCGTGGAGGTATTAATCCCAAATTTGATAGGGCCTCAGCGTGGGTCAATCGACCCATGTACAGGAAGCCCAGGATATATCGGACTATTCGAAGCCCTGATGTCCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCATTTGAACAGCGCCACGATATCTCCCATACCGGGAAGGTGCTGTGTATATCTGATGTGACACGGGGCAGTGGTATTACCCACCGTGTCGGTAAGCGTTTTTGCGTGAAGTCCGTTTATATTTTAGGCAAGGTATGGATGGACGAGAACATCAAGTTGAAGAACCATACGAACAGCGTCATGTTCTGGTTGGTTAGAGACAGGAGACCCTATGGCACGCCGATGGATTTTGGACAGGTGTTCAACCTGTTTGATAATGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGGGATCGTTTCCAAGTGATGCACAGATTCCACACTAAGGTGACGGGTGGACAGTATGCGAGCAACGAGCAGGCTCTTGTCCGGCGATTTTGGAAGGTCAACACCCATGTTGTGTACAACCATCAGGAAGCTGCGAAGTATGAGAACCACACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACCCTTAAGATCCGGATCTATTTCTACGATTCGGTATCGAATTAA
Protein Sequence MSKRAAPSWRSMAGISKVSRSLNFSPRGGINPKFDRASAWVNRPMYRKPRIYRTIRSPDVPKGCEGPCKVQSFEQRHDISHTGKVLCISDVTRGSGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKNDLRDRFQVMHRFHTKVTGGQYASNEQALVRRFWKVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_010087803.1
Location 948-1346
Gene Name AC3
Protein Name Ren
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAGATTTAGACATTTCATCATGTTTTATTTAGATAGTTTGGGCGTTATATCCATTAATAATGTAATTAGAGCTGTTCGTTTCGCAACACACAGACCATATGTAACATCTGTACTCGAAGATCATTCAATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGELITAPQAENGVYIWEVPNPLYFKIYRVEDPLYTTTRVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSVTASGTTYLDRFRHFIMFYLDSLGVISINNVIRAVRFATHRPYVTSVLEDHSIKFKLY

NCBI Accession YP_010087804.1
Location 1093-1482
Gene Name AC2
Protein Name TRaP
Coding Region ATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAGACGAATAGACCTCAACTGCGGGTGCTCAGTATACGTCCACATCAACTGCGTCGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAG
Protein Sequence MRGSSSSNPPSIKAQHRAAKRRAIRRRRIDLNCGCSVYVHINCVGHGFTHRGTHHCTSSGEWRVYLGSTKSPIFQDIPSRRPTLHHDQSLPHPDTVQPQPQESVGSPQGIPELPSLDDFSDSFWDDIFR

NCBI Accession YP_010087805.1
Location 1403-2503
Gene Name AC1
Protein Name REp
Coding Region TTGCTGGTGTCCTGCCCTATATTTACCAAAATGCCACGAAACCCTAATCAATTTAGGCTTGCTGCCAAAAATATATTCCTCACATATCCCCAATGCGATATACCAAAAGATGAAGCTCTTCAAATGCTTCAATCCCTTCCATGGTCAATCGTCAAACCCACATATATACGAGTCGCCAGGGAGGAACACTCCGACGGATTCCCCCACCTCCATTGTCTTATACAACTCTCAGGAAAGTCTAACATCAAGGATGTTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCACTTTTCACCCAAATATTCAGGCAGCCAAGGACACCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACGAAGGCCAATAAAGACGACGTCTACCACAACGCAGTTAATGCAGCTAGTGCAGGAGAGGCTCTGGAGATTATCAGAGCAGGAGACCCCAAGACGTTCGTTGTAAGTTATCATAACGTAAAGGCTAACATTGAACGTCTCTTCCAAAAAGCTCCTGAACCGAGGGTTCCTCCGTTTCCCCTCTCATCGTTCACTAACGTTCCCGCGGAGATGCAGGAATGGGCAGATGACTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTTTAATTATTGAGGGGGATTCGAGGACGGGGAAGACGATGTGGGCCATAGCATTGGGGGTCCACAATTATATCAGCGGCCACATTGATTTGAATTCTAGGGTTTACAACAATAATGCAGAGTACAACGTCATTGATGACATCCCTCCTCATTATTTAAAGTTAAAGCACTGGAAAGAATTAATTGGGGCCCAAAGCAACTGGCAGACAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATACCATCAATCGTGCTCTGCAATCCTGGCGAAGGAGCCAGCTATAAATATTTCCTCGACAAAGAGGAAAACGCATCCCTAAGAAATTGGACTCTCAAGAATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAG
Protein Sequence MLVSCPIFTKMPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQSLPWSIVKPTYIRVAREEHSDGFPHLHCLIQLSGKSNIKDVRFFDLTHPRRSATFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGTKANKDDVYHNAVNAASAGEALEIIRAGDPKTFVVSYHNVKANIERLFQKAPEPRVPPFPLSSFTNVPAEMQEWADDYFGRGSAARPERPISLIIEGDSRTGKTMWAIALGVHNYISGHIDLNSRVYNNNAEYNVIDDIPPHYLKLKHWKELIGAQSNWQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKYFLDKEENASLRNWTLKNARFVFLESPLYQSSTQSSQAQGNST

References More References in PubMed

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