Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_018587715.1 |
Isolate | Brazil |
Release date | 2021/6/1 |
Submitter | Alves-Andrade,I., Gilbertson,R.L., Boiteux,L.S., Fonseca,M.E.N., Rojas,M.R., Reis,L.N.A., Pereira-Carvalho,R.C. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_010087802.1 |
---|---|
Location | 193-951 |
Gene Name | AV1 |
Protein Name | Cp |
Coding Region | ATGTCTAAGCGGGCTGCCCCCTCGTGGCGCTCTATGGCGGGTATCTCAAAGGTTAGCCGCTCACTTAATTTCTCGCCTCGTGGAGGTATTAATCCCAAATTTGATAGGGCCTCAGCGTGGGTCAATCGACCCATGTACAGGAAGCCCAGGATATATCGGACTATTCGAAGCCCTGATGTCCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCATTTGAACAGCGCCACGATATCTCCCATACCGGGAAGGTGCTGTGTATATCTGATGTGACACGGGGCAGTGGTATTACCCACCGTGTCGGTAAGCGTTTTTGCGTGAAGTCCGTTTATATTTTAGGCAAGGTATGGATGGACGAGAACATCAAGTTGAAGAACCATACGAACAGCGTCATGTTCTGGTTGGTTAGAGACAGGAGACCCTATGGCACGCCGATGGATTTTGGACAGGTGTTCAACCTGTTTGATAATGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGGGATCGTTTCCAAGTGATGCACAGATTCCACACTAAGGTGACGGGTGGACAGTATGCGAGCAACGAGCAGGCTCTTGTCCGGCGATTTTGGAAGGTCAACACCCATGTTGTGTACAACCATCAGGAAGCTGCGAAGTATGAGAACCACACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACCCTTAAGATCCGGATCTATTTCTACGATTCGGTATCGAATTAA |
Protein Sequence | MSKRAAPSWRSMAGISKVSRSLNFSPRGGINPKFDRASAWVNRPMYRKPRIYRTIRSPDVPKGCEGPCKVQSFEQRHDISHTGKVLCISDVTRGSGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKNDLRDRFQVMHRFHTKVTGGQYASNEQALVRRFWKVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | YP_010087803.1 |
---|---|
Location | 948-1346 |
Gene Name | AC3 |
Protein Name | Ren |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAGATTTAGACATTTCATCATGTTTTATTTAGATAGTTTGGGCGTTATATCCATTAATAATGTAATTAGAGCTGTTCGTTTCGCAACACACAGACCATATGTAACATCTGTACTCGAAGATCATTCAATAAAATTCAAACTTTATTAA |
Protein Sequence | MDSRTGELITAPQAENGVYIWEVPNPLYFKIYRVEDPLYTTTRVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSVTASGTTYLDRFRHFIMFYLDSLGVISINNVIRAVRFATHRPYVTSVLEDHSIKFKLY |
NCBI Accession | YP_010087804.1 |
---|---|
Location | 1093-1482 |
Gene Name | AC2 |
Protein Name | TRaP |
Coding Region | ATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAGACGAATAGACCTCAACTGCGGGTGCTCAGTATACGTCCACATCAACTGCGTCGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAG |
Protein Sequence | MRGSSSSNPPSIKAQHRAAKRRAIRRRRIDLNCGCSVYVHINCVGHGFTHRGTHHCTSSGEWRVYLGSTKSPIFQDIPSRRPTLHHDQSLPHPDTVQPQPQESVGSPQGIPELPSLDDFSDSFWDDIFR |
NCBI Accession | YP_010087805.1 |
---|---|
Location | 1403-2503 |
Gene Name | AC1 |
Protein Name | REp |
Coding Region | TTGCTGGTGTCCTGCCCTATATTTACCAAAATGCCACGAAACCCTAATCAATTTAGGCTTGCTGCCAAAAATATATTCCTCACATATCCCCAATGCGATATACCAAAAGATGAAGCTCTTCAAATGCTTCAATCCCTTCCATGGTCAATCGTCAAACCCACATATATACGAGTCGCCAGGGAGGAACACTCCGACGGATTCCCCCACCTCCATTGTCTTATACAACTCTCAGGAAAGTCTAACATCAAGGATGTTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCACTTTTCACCCAAATATTCAGGCAGCCAAGGACACCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACGAAGGCCAATAAAGACGACGTCTACCACAACGCAGTTAATGCAGCTAGTGCAGGAGAGGCTCTGGAGATTATCAGAGCAGGAGACCCCAAGACGTTCGTTGTAAGTTATCATAACGTAAAGGCTAACATTGAACGTCTCTTCCAAAAAGCTCCTGAACCGAGGGTTCCTCCGTTTCCCCTCTCATCGTTCACTAACGTTCCCGCGGAGATGCAGGAATGGGCAGATGACTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTTTAATTATTGAGGGGGATTCGAGGACGGGGAAGACGATGTGGGCCATAGCATTGGGGGTCCACAATTATATCAGCGGCCACATTGATTTGAATTCTAGGGTTTACAACAATAATGCAGAGTACAACGTCATTGATGACATCCCTCCTCATTATTTAAAGTTAAAGCACTGGAAAGAATTAATTGGGGCCCAAAGCAACTGGCAGACAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATACCATCAATCGTGCTCTGCAATCCTGGCGAAGGAGCCAGCTATAAATATTTCCTCGACAAAGAGGAAAACGCATCCCTAAGAAATTGGACTCTCAAGAATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAG |
Protein Sequence | MLVSCPIFTKMPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQSLPWSIVKPTYIRVAREEHSDGFPHLHCLIQLSGKSNIKDVRFFDLTHPRRSATFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGTKANKDDVYHNAVNAASAGEALEIIRAGDPKTFVVSYHNVKANIERLFQKAPEPRVPPFPLSSFTNVPAEMQEWADDYFGRGSAARPERPISLIIEGDSRTGKTMWAIALGVHNYISGHIDLNSRVYNNNAEYNVIDDIPPHYLKLKHWKELIGAQSNWQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKYFLDKEENASLRNWTLKNARFVFLESPLYQSSTQSSQAQGNST |
1 |
Ogawa T, et al. Virus Res. 2008 Nov;137(2):235-44. doi: 10.1016/j.virusres.2008.07.021. Epub 2008 Sep 13. PMID: 18722488 |
---|---|
2 |
Next-Generation Sequencing and Genome Editing in Plant Virology. Hadidi A, et al. Front Microbiol. 2016 Aug 26;7:1325. doi: 10.3389/fmicb.2016.01325. eCollection 2016. PMID: 27617007 |
3 |
Jones RAC. Viruses. 2020 Dec 4;12(12):1388. doi: 10.3390/v12121388. PMID: 33291635 |
4 |
Genetic diversity of begomoviruses infecting tomato plant in Saudi Arabia. Sohrab SS. Saudi J Biol Sci. 2020 Jan;27(1):222-228. doi: 10.1016/j.sjbs.2019.08.015. Epub 2019 Aug 22. PMID: 31889840 |
5 |
Rapid detection of fifteen known soybean viruses by dot-immunobinding assay. Ali A. J Virol Methods. 2017 Nov;249:126-129. doi: 10.1016/j.jviromet.2017.09.003. Epub 2017 Sep 6. PMID: 28887190 |
6 |
Li C, et al. Virus Genes. 2020 Feb;56(1):67-77. doi: 10.1007/s11262-019-01708-5. Epub 2019 Oct 23. PMID: 31646461 |
7 |
Interaction of tomato yellow leaf curl virus with diverse betasatellites enhances symptom severity. Ito T, et al. Arch Virol. 2009;154(8):1233-9. doi: 10.1007/s00705-009-0431-8. Epub 2009 Jul 3. PMID: 19575277 |
8 |
A Bipartite Geminivirus Infecting Tomatoes in Cuba. Martinez Y, et al. Plant Dis. 1997 Oct;81(10):1215. doi: 10.1094/PDIS.1997.81.10.1215C. PMID: 30861720 |
9 |
Ling KS, et al. Plant Dis. 2014 May;98(5):701. doi: 10.1094/PDIS-09-13-0992-PDN. PMID: 30708518 |
10 |
Iris yellow spot virus: A New Onion Disease in Spain. Córdoba-Sellés C, et al. Plant Dis. 2005 Nov;89(11):1243. doi: 10.1094/PD-89-1243A. PMID: 30786456 |