Tomato mosaic severe dwarf virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_018587715.1 |
| Isolate | Brazil |
| Release date | 2021/6/1 |
| Submitter | Alves-Andrade,I., Gilbertson,R.L., Boiteux,L.S., Fonseca,M.E.N., Rojas,M.R., Reis,L.N.A., Pereira-Carvalho,R.C. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_055587
Gene Information
| NCBI Accession | YP_010087802.1 |
|---|---|
| Location | 193-951 |
| Gene Name | AV1 |
| Protein Name | Cp |
| Coding Region | ATGTCTAAGCGGGCTGCCCCCTCGTGGCGCTCTATGGCGGGTATCTCAAAGGTTAGCCGCTCACTTAATTTCTCGCCTCGTGGAGGTATTAATCCCAAATTTGATAGGGCCTCAGCGTGGGTCAATCGACCCATGTACAGGAAGCCCAGGATATATCGGACTATTCGAAGCCCTGATGTCCCTAAAGGGTGTGAGGGGCCTTGTAAGGTCCAATCATTTGAACAGCGCCACGATATCTCCCATACCGGGAAGGTGCTGTGTATATCTGATGTGACACGGGGCAGTGGTATTACCCACCGTGTCGGTAAGCGTTTTTGCGTGAAGTCCGTTTATATTTTAGGCAAGGTATGGATGGACGAGAACATCAAGTTGAAGAACCATACGAACAGCGTCATGTTCTGGTTGGTTAGAGACAGGAGACCCTATGGCACGCCGATGGATTTTGGACAGGTGTTCAACCTGTTTGATAATGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGGGATCGTTTCCAAGTGATGCACAGATTCCACACTAAGGTGACGGGTGGACAGTATGCGAGCAACGAGCAGGCTCTTGTCCGGCGATTTTGGAAGGTCAACACCCATGTTGTGTACAACCATCAGGAAGCTGCGAAGTATGAGAACCACACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACCCTTAAGATCCGGATCTATTTCTACGATTCGGTATCGAATTAA |
| Protein Sequence | MSKRAAPSWRSMAGISKVSRSLNFSPRGGINPKFDRASAWVNRPMYRKPRIYRTIRSPDVPKGCEGPCKVQSFEQRHDISHTGKVLCISDVTRGSGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKNDLRDRFQVMHRFHTKVTGGQYASNEQALVRRFWKVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
| NCBI Accession | YP_010087803.1 |
|---|---|
| Location | 948-1346 |
| Gene Name | AC3 |
| Protein Name | Ren |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAGATTTAGACATTTCATCATGTTTTATTTAGATAGTTTGGGCGTTATATCCATTAATAATGTAATTAGAGCTGTTCGTTTCGCAACACACAGACCATATGTAACATCTGTACTCGAAGATCATTCAATAAAATTCAAACTTTATTAA |
| Protein Sequence | MDSRTGELITAPQAENGVYIWEVPNPLYFKIYRVEDPLYTTTRVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSVTASGTTYLDRFRHFIMFYLDSLGVISINNVIRAVRFATHRPYVTSVLEDHSIKFKLY |
| NCBI Accession | YP_010087804.1 |
|---|---|
| Location | 1093-1482 |
| Gene Name | AC2 |
| Protein Name | TRaP |
| Coding Region | ATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAGACGAATAGACCTCAACTGCGGGTGCTCAGTATACGTCCACATCAACTGCGTCGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAAGCGGAGAATGGCGTGTATATCTGGGAAGTACCAAATCCCCTATATTTCAAGATATACCGAGTCGAAGACCCACTCTACACCACGACCAGAGTCTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCATACCTGAACTTCCAAGTCTGGACGACTTCAGTGACAGCTTCTGGGACGACATATTTAGATAG |
| Protein Sequence | MRGSSSSNPPSIKAQHRAAKRRAIRRRRIDLNCGCSVYVHINCVGHGFTHRGTHHCTSSGEWRVYLGSTKSPIFQDIPSRRPTLHHDQSLPHPDTVQPQPQESVGSPQGIPELPSLDDFSDSFWDDIFR |
| NCBI Accession | YP_010087805.1 |
|---|---|
| Location | 1403-2503 |
| Gene Name | AC1 |
| Protein Name | REp |
| Coding Region | TTGCTGGTGTCCTGCCCTATATTTACCAAAATGCCACGAAACCCTAATCAATTTAGGCTTGCTGCCAAAAATATATTCCTCACATATCCCCAATGCGATATACCAAAAGATGAAGCTCTTCAAATGCTTCAATCCCTTCCATGGTCAATCGTCAAACCCACATATATACGAGTCGCCAGGGAGGAACACTCCGACGGATTCCCCCACCTCCATTGTCTTATACAACTCTCAGGAAAGTCTAACATCAAGGATGTTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCACTTTTCACCCAAATATTCAGGCAGCCAAGGACACCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAATACAAGGTGTCTGGGGGTACGAAGGCCAATAAAGACGACGTCTACCACAACGCAGTTAATGCAGCTAGTGCAGGAGAGGCTCTGGAGATTATCAGAGCAGGAGACCCCAAGACGTTCGTTGTAAGTTATCATAACGTAAAGGCTAACATTGAACGTCTCTTCCAAAAAGCTCCTGAACCGAGGGTTCCTCCGTTTCCCCTCTCATCGTTCACTAACGTTCCCGCGGAGATGCAGGAATGGGCAGATGACTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTTTAATTATTGAGGGGGATTCGAGGACGGGGAAGACGATGTGGGCCATAGCATTGGGGGTCCACAATTATATCAGCGGCCACATTGATTTGAATTCTAGGGTTTACAACAATAATGCAGAGTACAACGTCATTGATGACATCCCTCCTCATTATTTAAAGTTAAAGCACTGGAAAGAATTAATTGGGGCCCAAAGCAACTGGCAGACAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATACCATCAATCGTGCTCTGCAATCCTGGCGAAGGAGCCAGCTATAAATATTTCCTCGACAAAGAGGAAAACGCATCCCTAAGAAATTGGACTCTCAAGAATGCGAGGTTCGTCTTCCTCGAATCCCCCCTCTATCAAAGCTCAACACAGAGCAGCCAAGCGCAGGGCAATTCGACGTAG |
| Protein Sequence | MLVSCPIFTKMPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQSLPWSIVKPTYIRVAREEHSDGFPHLHCLIQLSGKSNIKDVRFFDLTHPRRSATFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGTKANKDDVYHNAVNAASAGEALEIIRAGDPKTFVVSYHNVKANIERLFQKAPEPRVPPFPLSSFTNVPAEMQEWADDYFGRGSAARPERPISLIIEGDSRTGKTMWAIALGVHNYISGHIDLNSRVYNNNAEYNVIDDIPPHYLKLKHWKELIGAQSNWQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKYFLDKEENASLRNWTLKNARFVFLESPLYQSSTQSSQAQGNST |
References More References in PubMed
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