Tomato leaf distortion virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_002824485.1 |
| Isolate | Brazil |
| Release date | 2018/8/25 |
| Submitter | Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038474
Gene Information
| NCBI Accession | YP_009506553.1 |
|---|---|
| Location | 228-983 |
| Gene Name | CP |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCGAAGGTTAGCCGCTCTTCCAATTTCTCCCCCCGTGGAGGTGGAGGCCCAAAGTTCAACAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCACGACATCTCACATGTCGGTAAGGTGATGTGCATTTCTGATGTGACACGTGGTAATGGTATTACCCACCGTGTCGGTAAGCGTTTCTGCGTTAAGTCTGTGTACATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAATAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCGTATGGTACTCCTATGGACTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTCCGTGATCGTTATCAAGTTATGCACAAGTTCTACGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTATGAGAATCACACGGAGAATGCTTTGTTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTAAAGATTCGAATTTATTTTTACGATTCGATCACCAATTAA |
| Protein Sequence | MPKRDAPWRLMAGTSKVSRSSNFSPRGGGGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
| NCBI Accession | YP_009506554.1 |
|---|---|
| Location | 980-1378 |
| Gene Name | Ren |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAGGTTTAGGCACTTAGTAATGATGTACTTAGAACAATTAGGTGTAATTGCACTTAATAATGTAATTAGAGCTGTTCGATTCGCAACAGACAAATCATATGTAAATCATGTACTAGAAAATCATTCAATAAAATTCAAATTTTATTAA |
| Protein Sequence | MDSRTGELITAHQAENGVYIWEITNPLYFKMHRVEDIPFTRTRVYHIQIRFNHNLRKALGLHKAFLNFQVWTTSMRASGMTYLSRFRHLVMMYLEQLGVIALNNVIRAVRFATDKSYVNHVLENHSIKFKFY |
| NCBI Accession | YP_009506555.1 |
|---|---|
| Location | 1125-1514 |
| Gene Name | Trap |
| Protein Name | trans-activating protein |
| Coding Region | ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGATATCGAGTGCGGCTGCTCCATATACGTCCATATAAACTGCATAGGTCATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAG |
| Protein Sequence | MLNSSSSTPPSIKQQHRIAKKRAIRRRRIDIECGCSIYVHINCIGHGFTHRGTHHCTSGREWRLYLGDNKSPVFQDAPSRRHPVHKDQSVSHPDTVQPQPQESVGSPQGIPELPSLDDIDESFWDDLFK |
| NCBI Accession | YP_009506556.1 |
|---|---|
| Location | 1426-2511 |
| Gene Name | Rep |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCACCCCCAAAGCGGTTTAAAATATCTTCCAAAAACTATTTTGTCACATACCCTCATTGTTCTCTGACCAAAGAAGAAGCACTTGCCCAACTTAAACTCCTTAACACCCCAACCAACAAGAAGTATATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGAATGCATCATCAAAGGAAGAGGCGATGATGATTATCAAGGAAAAGCTGCCGGAAAAATTCCTCTTCCAATACCATAACCTATCCAGTAACCTGGATAGAATATTCAAAAAGGCTCCGGATCCTTGGGTTCCTCCGTTTCCCCTCTCATCCTTCACTAACGTTCCTGACGAGATGCAGGAATGGGCCGATGAGTATTTTGGAAGAGGAGCCGCTGCGCGGCCAGTGAGACCCATGAGTATAATCGTCCAAGGTGATAGTCGAACGGGGAAGACGATGTGGGCCAGAGCTTTGGGGTCTCACAATTATCTGAGTGGACACCTGGACTTCAATTCTAGGGTTTACTCAAATGACGTTGAGTATAACGTCATCGATGATGTCACCCCGCATTATTTAAAGTTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGAATTCCTTCAATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGCTATAAAGATTTCCTGGAGAAAGAGGAAAATGCATCCCTGAAGTCGTGGACACTATACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGA |
| Protein Sequence | MPPPKRFKISSKNYFVTYPHCSLTKEEALAQLKLLNTPTNKKYIKICRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQVDGRSARGGQQTSNDAAAEALNASSKEEAMMIIKEKLPEKFLFQYHNLSSNLDRIFKKAPDPWVPPFPLSSFTNVPDEMQEWADEYFGRGAAARPVRPMSIIVQGDSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVEYNVIDDVTPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENASLKSWTLYNAKFIFLDSPLYQTATQDCEEESNPAATD |
| NCBI Accession | YP_009506557.1 |
|---|---|
| Location | 2097-2360 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGA |
| Protein Sequence | MRMGNLIYTCLYSSKGNTSAQITDSSTWYPHPGQHISIRTFRELNHRPTSSPTSIRTVILSNGENSKSTAEVLEEVSKRLTTLQLRR |
References More References in PubMed
| 1 |
First report of squash leaf curl China virus infecting tomato in China. Qiu Y, et al. Plant Dis. 2022 Feb 27. doi: 10.1094/PDIS-10-21-2192-PDN. Online ahead of print. PMID: 35224985 |
|---|---|
| 2 |
Martins TP, et al. Arch Virol. 2021 Nov;166(11):3217-3220. doi: 10.1007/s00705-021-05220-w. Epub 2021 Sep 8. PMID: 34498121 |
| 3 |
Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China. Li R, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print. PMID: 36281022 |
| 4 |
Zambrano K, et al. Arch Virol. 2011 Dec;156(12):2263-6. doi: 10.1007/s00705-011-1093-x. Epub 2011 Aug 19. PMID: 21853328 |
| 5 |
Tiwari N, et al. Arch Virol. 2010 Aug;155(8):1343-7. doi: 10.1007/s00705-010-0710-4. Epub 2010 Jun 5. PMID: 20526636 |
| 6 |
An anomalous detection of Tomato yellow leaf curl virus in tomato in New York State. Perry KL. Plant Dis. 2021 Apr 28. doi: 10.1094/PDIS-02-21-0356-PDN. Online ahead of print. PMID: 33908793 |
| 7 |
First Report of Tomato yellow leaf curl virus Infecting Tomato, Tomatillo, and Peppers in Guatemala. Salati R, et al. Plant Dis. 2010 Apr;94(4):482. doi: 10.1094/PDIS-94-4-0482C. PMID: 30754504 |
| 8 |
First Report of Tomato chlorosis virus (ToCV) in Tomato Crops in Saudi Arabia. Al-Saleh MA, et al. Plant Dis. 2014 Nov;98(11):1590. doi: 10.1094/PDIS-05-14-0443-PDN. PMID: 30699840 |
| 9 |
Spinach latent virus Infecting Tomato in Virginia, United States. Vargas-Asencio J, et al. Plant Dis. 2013 Dec;97(12):1663. doi: 10.1094/PDIS-05-13-0529-PDN. PMID: 30716862 |
| 10 |
A distinct seed-transmissible strain of tomato leaf curl New Delhi virus infecting Chayote in India. Sangeetha B, et al. Virus Res. 2018 Oct 15;258:81-91. doi: 10.1016/j.virusres.2018.10.009. Epub 2018 Oct 15. PMID: 30336187 |