Tomato leaf distortion virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824485.1
Isolate Brazil
Release date 2018/8/25
Submitter Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038474
ACCGGATGGCCGCGCGATTTTTTGCCCCCCGCACGTGGCGCTTTTGTGGCCGCTGGATATTTTTCTCCCGCGCGCTGTACTCTTTAATTCTAATTAAAGGTATAACTTTAGTTTCCACCAATGATAGTGCGCCTGGGAAGTCTAGATATGTGCGCGATACTTGGGGCCGAAGTTGTTGATCAACGGCTATAAATTAAAAGAAGACTGACCACAGTCTTTAATTCATAATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCGAAGGTTAGCCGCTCTTCCAATTTCTCCCCCCGTGGAGGTGGAGGCCCAAAGTTCAACAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCACGACATCTCACATGTCGGTAAGGTGATGTGCATTTCTGATGTGACACGTGGTAATGGTATTACCCACCGTGTCGGTAAGCGTTTCTGCGTTAAGTCTGTGTACATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAATAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCGTATGGTACTCCTATGGACTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTCCGTGATCGTTATCAAGTTATGCACAAGTTCTACGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTATGAGAATCACACGGAGAATGCTTTGTTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTAAAGATTCGAATTTATTTTTACGATTCGATCACCAATTAATAAAATTTGAATTTTATTGAATGATTTTCTAGTACATGATTTACATATGATTTGTCTGTTGCGAATCGAACAGCTCTAATTACATTATTAAGTGCAATTACACCTAATTGTTCTAAGTACATCATTACTAAGTGCCTAAACCTACTTAAATAAGTCATCCCAGAAGCTCTCATCGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAACGCTTTCCTGAGGTTGTGGTTGAACCGTATCTGGATGTGATACACTCTGGTCCTTGTGAACGGGATGTCTTCTACTCGGTGCATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGCCTGATGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATGACCTATGCAGTTTATATGGACGTATATGGAGCAGCCGCACTCGATATCAATCCGTCGCCGCCGGATTGCTCTCTTCTTCGCAATCCTGTGTTGCTGTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTATAGTGTCCACGACTTCAGGGATGCATTTTCCTCTTTCTCCAGGAAATCTTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACGATTGAAGGAATTCCACCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAACTTTAAATAATGCGGGGTGACATCATCGATGACGTTATACTCAACGTCATTTGAGTAAACCCTAGAATTGAAGTCCAGGTGTCCACTCAGATAATTGTGAGACCCCAAAGCTCTGGCCCACATCGTCTTCCCCGTTCGACTATCACCTTGGACGATTATACTCATGGGTCTCACTGGCCGCGCAGCGGCTCCTCTTCCAAAATACTCATCGGCCCATTCCTGCATCTCGTCAGGAACGTTAGTGAAGGATGAGAGGGGAAACGGAGGAACCCAAGGATCCGGAGCCTTTTTGAATATTCTATCCAGGTTACTGGATAGGTTATGGTATTGGAAGAGGAATTTTTCCGGCAGCTTTTCCTTGATAATCATCATCGCCTCTTCCTTTGATGATGCATTCAACGCCTCAGCTGCAGCGTCGTTAGACGTTTGCTGACCTCCTCTAGCACTTCTGCCGTCGACTTGGAATTCTCCCCATTCGATAGTATCACCGTCCTTATCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGATGGGGATACCAAGTCGAAGAATCTGTTATTTGTGCACTGGTATTTCCCTTCGAACTGTATAAGCACGTGTAGATGAGGTTCCCCATTCTCATGCAGTTCTCTGCAGATTTTGATATACTTCTTGTTGGTTGGGGTGTTAAGGAGTTTAAGTTGGGCAAGTGCTTCTTCTTTGGTCAGAGAACAATGAGGGTATGTGACAAAATAGTTTTTGGAAGATATTTTAAACCGCTTTGGGGGTGGCATATTTGTAAATATAGCCTTGTACCCCAATTGCTCCGGCTCTCAAAACTCTATATGAATTGGGGTAATGGGGTACAATATATAGTAAGGAGTTCCATAAGCTCCTAGGGGCACGTGGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506553.1
Location 228-983
Gene Name CP
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCGAAGGTTAGCCGCTCTTCCAATTTCTCCCCCCGTGGAGGTGGAGGCCCAAAGTTCAACAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCACGACATCTCACATGTCGGTAAGGTGATGTGCATTTCTGATGTGACACGTGGTAATGGTATTACCCACCGTGTCGGTAAGCGTTTCTGCGTTAAGTCTGTGTACATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAATAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCGTATGGTACTCCTATGGACTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTCCGTGATCGTTATCAAGTTATGCACAAGTTCTACGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTATGAGAATCACACGGAGAATGCTTTGTTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTAAAGATTCGAATTTATTTTTACGATTCGATCACCAATTAA
Protein Sequence MPKRDAPWRLMAGTSKVSRSSNFSPRGGGGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009506554.1
Location 980-1378
Gene Name Ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAGGTTTAGGCACTTAGTAATGATGTACTTAGAACAATTAGGTGTAATTGCACTTAATAATGTAATTAGAGCTGTTCGATTCGCAACAGACAAATCATATGTAAATCATGTACTAGAAAATCATTCAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGELITAHQAENGVYIWEITNPLYFKMHRVEDIPFTRTRVYHIQIRFNHNLRKALGLHKAFLNFQVWTTSMRASGMTYLSRFRHLVMMYLEQLGVIALNNVIRAVRFATDKSYVNHVLENHSIKFKFY

NCBI Accession YP_009506555.1
Location 1125-1514
Gene Name Trap
Protein Name trans-activating protein
Coding Region ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGATATCGAGTGCGGCTGCTCCATATACGTCCATATAAACTGCATAGGTCATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAG
Protein Sequence MLNSSSSTPPSIKQQHRIAKKRAIRRRRIDIECGCSIYVHINCIGHGFTHRGTHHCTSGREWRLYLGDNKSPVFQDAPSRRHPVHKDQSVSHPDTVQPQPQESVGSPQGIPELPSLDDIDESFWDDLFK

NCBI Accession YP_009506556.1
Location 1426-2511
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCACCCCCAAAGCGGTTTAAAATATCTTCCAAAAACTATTTTGTCACATACCCTCATTGTTCTCTGACCAAAGAAGAAGCACTTGCCCAACTTAAACTCCTTAACACCCCAACCAACAAGAAGTATATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGAATGCATCATCAAAGGAAGAGGCGATGATGATTATCAAGGAAAAGCTGCCGGAAAAATTCCTCTTCCAATACCATAACCTATCCAGTAACCTGGATAGAATATTCAAAAAGGCTCCGGATCCTTGGGTTCCTCCGTTTCCCCTCTCATCCTTCACTAACGTTCCTGACGAGATGCAGGAATGGGCCGATGAGTATTTTGGAAGAGGAGCCGCTGCGCGGCCAGTGAGACCCATGAGTATAATCGTCCAAGGTGATAGTCGAACGGGGAAGACGATGTGGGCCAGAGCTTTGGGGTCTCACAATTATCTGAGTGGACACCTGGACTTCAATTCTAGGGTTTACTCAAATGACGTTGAGTATAACGTCATCGATGATGTCACCCCGCATTATTTAAAGTTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGAATTCCTTCAATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGCTATAAAGATTTCCTGGAGAAAGAGGAAAATGCATCCCTGAAGTCGTGGACACTATACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGA
Protein Sequence MPPPKRFKISSKNYFVTYPHCSLTKEEALAQLKLLNTPTNKKYIKICRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQVDGRSARGGQQTSNDAAAEALNASSKEEAMMIIKEKLPEKFLFQYHNLSSNLDRIFKKAPDPWVPPFPLSSFTNVPDEMQEWADEYFGRGAAARPVRPMSIIVQGDSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVEYNVIDDVTPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENASLKSWTLYNAKFIFLDSPLYQTATQDCEEESNPAATD

NCBI Accession YP_009506557.1
Location 2097-2360
Gene Name AC4
Protein Name AC4
Coding Region ATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGA
Protein Sequence MRMGNLIYTCLYSSKGNTSAQITDSSTWYPHPGQHISIRTFRELNHRPTSSPTSIRTVILSNGENSKSTAEVLEEVSKRLTTLQLRR

References More References in PubMed

1

First report of squash leaf curl China virus infecting tomato in China.

Qiu Y, et al.  Plant Dis. 2022 Feb 27. doi: 10.1094/PDIS-10-21-2192-PDN. Online ahead of print.

PMID: 35224985

2

Nanopore sequencing of tomato mottle leaf distortion virus, a new bipartite begomovirus infecting tomato in Brazil.

Martins TP, et al.  Arch Virol. 2021 Nov;166(11):3217-3220. doi: 10.1007/s00705-021-05220-w. Epub 2021 Sep 8.

PMID: 34498121

3

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022

4

Tomato chlorotic leaf distortion virus, a new bipartite begomovirus infecting Solanum lycopersicum and Capsicum chinense in Venezuela.

Zambrano K, et al.  Arch Virol. 2011 Dec;156(12):2263-6. doi: 10.1007/s00705-011-1093-x. Epub 2011 Aug 19.

PMID: 21853328

5

Tomato leaf curl Bangalore virus (ToLCBV): infectivity and enhanced pathogenicity with diverse betasatellites.

Tiwari N, et al.  Arch Virol. 2010 Aug;155(8):1343-7. doi: 10.1007/s00705-010-0710-4. Epub 2010 Jun 5.

PMID: 20526636

6

An anomalous detection of Tomato yellow leaf curl virus in tomato in New York State.

Perry KL.  Plant Dis. 2021 Apr 28. doi: 10.1094/PDIS-02-21-0356-PDN. Online ahead of print.

PMID: 33908793

7

First Report of Tomato yellow leaf curl virus Infecting Tomato, Tomatillo, and Peppers in Guatemala.

Salati R, et al.  Plant Dis. 2010 Apr;94(4):482. doi: 10.1094/PDIS-94-4-0482C.

PMID: 30754504

8

First Report of Tomato chlorosis virus (ToCV) in Tomato Crops in Saudi Arabia.

Al-Saleh MA, et al.  Plant Dis. 2014 Nov;98(11):1590. doi: 10.1094/PDIS-05-14-0443-PDN.

PMID: 30699840

9

Spinach latent virus Infecting Tomato in Virginia, United States.

Vargas-Asencio J, et al.  Plant Dis. 2013 Dec;97(12):1663. doi: 10.1094/PDIS-05-13-0529-PDN.

PMID: 30716862

10

A distinct seed-transmissible strain of tomato leaf curl New Delhi virus infecting Chayote in India.

Sangeetha B, et al.  Virus Res. 2018 Oct 15;258:81-91. doi: 10.1016/j.virusres.2018.10.009. Epub 2018 Oct 15.

PMID: 30336187