Tomato leaf distortion virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_002824485.1 |
| Isolate | Brazil |
| Release date | 2018/8/25 |
| Submitter | Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038474
Gene Information
| NCBI Accession | YP_009506553.1 |
|---|---|
| Location | 228-983 |
| Gene Name | CP |
| Protein Name | coat protein |
| Coding Region | ATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCGAAGGTTAGCCGCTCTTCCAATTTCTCCCCCCGTGGAGGTGGAGGCCCAAAGTTCAACAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCACGACATCTCACATGTCGGTAAGGTGATGTGCATTTCTGATGTGACACGTGGTAATGGTATTACCCACCGTGTCGGTAAGCGTTTCTGCGTTAAGTCTGTGTACATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAATAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCGTATGGTACTCCTATGGACTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTCCGTGATCGTTATCAAGTTATGCACAAGTTCTACGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTATGAGAATCACACGGAGAATGCTTTGTTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTAAAGATTCGAATTTATTTTTACGATTCGATCACCAATTAA |
| Protein Sequence | MPKRDAPWRLMAGTSKVSRSSNFSPRGGGGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
| NCBI Accession | YP_009506554.1 |
|---|---|
| Location | 980-1378 |
| Gene Name | Ren |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAGGTTTAGGCACTTAGTAATGATGTACTTAGAACAATTAGGTGTAATTGCACTTAATAATGTAATTAGAGCTGTTCGATTCGCAACAGACAAATCATATGTAAATCATGTACTAGAAAATCATTCAATAAAATTCAAATTTTATTAA |
| Protein Sequence | MDSRTGELITAHQAENGVYIWEITNPLYFKMHRVEDIPFTRTRVYHIQIRFNHNLRKALGLHKAFLNFQVWTTSMRASGMTYLSRFRHLVMMYLEQLGVIALNNVIRAVRFATDKSYVNHVLENHSIKFKFY |
| NCBI Accession | YP_009506555.1 |
|---|---|
| Location | 1125-1514 |
| Gene Name | Trap |
| Protein Name | trans-activating protein |
| Coding Region | ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGATATCGAGTGCGGCTGCTCCATATACGTCCATATAAACTGCATAGGTCATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAG |
| Protein Sequence | MLNSSSSTPPSIKQQHRIAKKRAIRRRRIDIECGCSIYVHINCIGHGFTHRGTHHCTSGREWRLYLGDNKSPVFQDAPSRRHPVHKDQSVSHPDTVQPQPQESVGSPQGIPELPSLDDIDESFWDDLFK |
| NCBI Accession | YP_009506556.1 |
|---|---|
| Location | 1426-2511 |
| Gene Name | Rep |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCACCCCCAAAGCGGTTTAAAATATCTTCCAAAAACTATTTTGTCACATACCCTCATTGTTCTCTGACCAAAGAAGAAGCACTTGCCCAACTTAAACTCCTTAACACCCCAACCAACAAGAAGTATATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGAATGCATCATCAAAGGAAGAGGCGATGATGATTATCAAGGAAAAGCTGCCGGAAAAATTCCTCTTCCAATACCATAACCTATCCAGTAACCTGGATAGAATATTCAAAAAGGCTCCGGATCCTTGGGTTCCTCCGTTTCCCCTCTCATCCTTCACTAACGTTCCTGACGAGATGCAGGAATGGGCCGATGAGTATTTTGGAAGAGGAGCCGCTGCGCGGCCAGTGAGACCCATGAGTATAATCGTCCAAGGTGATAGTCGAACGGGGAAGACGATGTGGGCCAGAGCTTTGGGGTCTCACAATTATCTGAGTGGACACCTGGACTTCAATTCTAGGGTTTACTCAAATGACGTTGAGTATAACGTCATCGATGATGTCACCCCGCATTATTTAAAGTTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGAATTCCTTCAATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGCTATAAAGATTTCCTGGAGAAAGAGGAAAATGCATCCCTGAAGTCGTGGACACTATACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGA |
| Protein Sequence | MPPPKRFKISSKNYFVTYPHCSLTKEEALAQLKLLNTPTNKKYIKICRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQVDGRSARGGQQTSNDAAAEALNASSKEEAMMIIKEKLPEKFLFQYHNLSSNLDRIFKKAPDPWVPPFPLSSFTNVPDEMQEWADEYFGRGAAARPVRPMSIIVQGDSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVEYNVIDDVTPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENASLKSWTLYNAKFIFLDSPLYQTATQDCEEESNPAATD |
| NCBI Accession | YP_009506557.1 |
|---|---|
| Location | 2097-2360 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGA |
| Protein Sequence | MRMGNLIYTCLYSSKGNTSAQITDSSTWYPHPGQHISIRTFRELNHRPTSSPTSIRTVILSNGENSKSTAEVLEEVSKRLTTLQLRR |
References More References in PubMed
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Xie Y, et al. Virology. 2024 Jun;594:110040. doi: 10.1016/j.virol.2024.110040. Epub 2024 Mar 5. PMID: 38471198 |
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Zambrano K, et al. Arch Virol. 2011 Dec;156(12):2263-6. doi: 10.1007/s00705-011-1093-x. Epub 2011 Aug 19. PMID: 21853328 |
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Tiwari N, et al. Arch Virol. 2010 Aug;155(8):1343-7. doi: 10.1007/s00705-010-0710-4. Epub 2010 Jun 5. PMID: 20526636 |
| 5 |
First Report of Tomato yellow leaf curl virus Infecting Tomato, Tomatillo, and Peppers in Guatemala. Salati R, et al. Plant Dis. 2010 Apr;94(4):482. doi: 10.1094/PDIS-94-4-0482C. PMID: 30754504 |
| 6 |
Molecular characterization and pathogenicity of tomato yellow leaf curl virus in China. Zhang H, et al. Virus Genes. 2009 Oct;39(2):249-55. doi: 10.1007/s11262-009-0384-8. PMID: 19590945 |
| 7 |
Evolutionary and molecular aspects of Indian tomato leaf curl virus coat protein. Kumar SP, et al. Int J Plant Genomics. 2012;2012:417935. doi: 10.1155/2012/417935. Epub 2012 Dec 11. PMID: 23304121 |
| 8 |
A distinct seed-transmissible strain of tomato leaf curl New Delhi virus infecting Chayote in India. Sangeetha B, et al. Virus Res. 2018 Oct 15;258:81-91. doi: 10.1016/j.virusres.2018.10.009. Epub 2018 Oct 15. PMID: 30336187 |
| 9 |
First record of tomato yellow leaf curl Sardinia virus (TYLCSV) on pepper in Italy. Fanigliulo A, et al. Commun Agric Appl Biol Sci. 2008;73(2):297-302. PMID: 19226766 |
| 10 |
Introduction of the Exotic Monopartite Tomato yellow leaf curl virus into West Coast Mexico. Brown JK, et al. Plant Dis. 2006 Oct;90(10):1360. doi: 10.1094/PD-90-1360A. PMID: 30780952 |