Tomato leaf deformation virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000888595.1 |
| Isolate |
Peru: Carabayllo |
| Release date |
2015/2/22 |
| Submitter |
Marquez-Martin,B., Aragon-Caballero,L., Fiallo-Olive,E., Navas-Castillo,J., Moriones,E. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTACCCCCTTGTTAAGTTTGGGACCACACATATACGGACAAAACCTTTTGTCCAATCATAGAGCGTCTGACGAGCTTAATTATTAAATTCCTTTAGACTGAGTGGTCTATAAAGACCCAGACAAACTGTAATAATTGATATCTTTAACTCAAAATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAATAAAGTTTAATTTTTATTGAATGATTCTCAAGTACATGATTTACATATGGTTTATCTGTTGCAAATCGAACAGATCTAATTACATTGTTAATAGAAATAACTCCTAAATTATCTAAATAAAATAAAACTAAATGTCTAAATCTATTTAAATATGTCGTCCCAGAAGCTTGAACTGATGTCGTCCAGACTTGGAAGTTCAAGAAGGCTTTGTGTAGTTGAAGCGACTTCCTCAGGTTGTGGTTGAACCGTATTTGGATGTGGTATACTCTCGTCGTTGTGGACGGTATGTCTTCCACGTTCTGTATCTTGAAATAAAGGGGATTTGGTACCTCCCAGATAAAAACGGAATTCTCTGCCTGATGCACAGTGATGTTCTCCCCGGTGCGTGAATCCATTATTAACACAGTTAATATGCAGGAAGAATGAGCAGCCACAGTCTAGGTCTATGCGTTTCCTTCTGATGGGCTTTGCCTTGGCAATCTTATGCCTCGTTTTGATAGAGGGAGGAGTTGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGCTCTTAGAGCTGCATTTTCCTCTTTCTCAAGGAAGTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTTAATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTCCGCTCCATTTGAATAAACTTTGGAATTAAAATCCAGGTGTCCACTCAGATAATTATGTGGGCCTAGTGCACGAGCCCACATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTATACTGATAGGTCTTTCTGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCATTCTTGCATCTCCTCCGGGACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAGACCATGGCTCCGGAGCCTTCGAAAAAATTTTATCTAAATTACAATTTAAATTATGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTTATTATTTGGAGGGCTGCCTCTTTGCTACCGCTATTTAAGGCTTCTGCGGCAGCGTCGTTAGCAGTTTGGCTGCCTCCTCTAGCACTTCTGCCGTCGACTTGGAATTCTCCCCATTCAAGTGTATCTCCGTCCTTGTCGACGTAGGCGTTGACGTCGGTGCTGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTTACATTGGAATTTGCCTTGGAACTGGAGTAGCACGTGGAGATGATGTTGCCCATCTTCGTGAAGTTCCCTTGCAATTTTGATATATTTCTTATTTGTGGGTGTCTCTAGATTTTGCAATTGGGAAAGTGCTTCTTCTTTGGTTAAATTGCAGTGGGGATATGTAAGAAAATAATTTTTTGCATTTATCTTAAAGGCCTTAGGTGGGGGCATTTTGGTAATAAATATTTTGGACACCGATTGGTTTGGCTTCTAAAACTTATAGCAATCGGTGTACTGGAGTCTTATTTATAGTAGGAGTTCCTAAAGGATCTAGCAACACGTGGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_003896041.2
|
|
Location
|
176-931 |
|
Gene Name
|
AV1 |
|
Protein Name
|
AV1 |
|
Coding Region
|
ATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAA |
|
Protein Sequence
|
MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMYRKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISRIGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRSYFYDSITN |
|
NCBI Accession
|
YP_003896042.1
|
|
Location
|
928-1326 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAGATTTAGACATTTAGTTTTATTTTATTTAGATAATTTAGGAGTTATTTCTATTAACAATGTAATTAGATCTGTTCGATTTGCAACAGATAAACCATATGTAAATCATGTACTTGAGAATCATTCAATAAAAATTAAACTTTATTAA |
|
Protein Sequence
|
MDSRTGENITVHQAENSVFIWEVPNPLYFKIQNVEDIPSTTTRVYHIQIRFNHNLRKSLQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINNVIRSVRFATDKPYVNHVLENHSIKIKLY |
|
NCBI Accession
|
YP_003896043.1
|
|
Location
|
1073-1462 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAAGATTGCCAAGGCAAAGCCCATCAGAAGGAAACGCATAGACCTAGACTGTGGCTGCTCATTCTTCCTGCATATTAACTGTGTTAATAATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAG |
|
Protein Sequence
|
MQNSSSSTPPSIKTRHKIAKAKPIRRKRIDLDCGCSFFLHINCVNNGFTHRGEHHCASGREFRFYLGGTKSPLFQDTERGRHTVHNDESIPHPNTVQPQPEEVASTTQSLLELPSLDDISSSFWDDIFK |
|
NCBI Accession
|
YP_003896044.1
|
|
Location
|
1413-2459 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 |
|
Coding Region
|
ATGCCCCCACCTAAGGCCTTTAAGATAAATGCAAAAAATTATTTTCTTACATATCCCCACTGCAATTTAACCAAAGAAGAAGCACTTTCCCAATTGCAAAATCTAGAGACACCCACAAATAAGAAATATATCAAAATTGCAAGGGAACTTCACGAAGATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAAATAGCGGTAGCAAAGAGGCAGCCCTCCAAATAATAAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAAATTGTAATTTAGATAAAATTTTTTCGAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCACTCTCCTCCTTCACTAACGTCCCGGAGGAGATGCAAGAATGGGCTGATGATTATTTTGGTAGGGGTGCCGCTGCGCGGCCAGAAAGACCTATCAGTATAATAATAGAGGGATGTTCAAGGACAGGTAAGACTATGTGGGCTCGTGCACTAGGCCCACATAATTATCTGAGTGGACACCTGGATTTTAATTCCAAAGTTTATTCAAATGGAGCGGACTATAACGTCATTGATGACGTCAGTCCGCAATATTTAAAGATGAAACATTGGAAAGAGCTGATAGGGGCCCAGAAAGATTGGCAATCAAACTGTAAATACGGAAAGCCAATTCAAATTAAAGGTGGCATACCCTCTATCGTGCTCTGCAATCCAGGAGAGGGACAGAGCTATAAAGACTTCCTTGAGAAAGAGGAAAATGCAGCTCTAAGAGCGTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAA |
|
Protein Sequence
|
MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIKIARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYVDKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFHNLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEGCSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQKDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLEKEENAALRAWTLHNAKFIFLNSSLYQNEA |
|
NCBI Accession
|
YP_003896045.1
|
|
Location
|
2045-2302 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAA |
|
Protein Sequence
|
MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPAPTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP |