Tomato leaf deformation virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000888595.1 |
| Isolate | Peru: Carabayllo |
| Release date | 2015/2/22 |
| Submitter | Marquez-Martin,B., Aragon-Caballero,L., Fiallo-Olive,E., Navas-Castillo,J., Moriones,E. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_014510
Gene Information
| NCBI Accession | YP_003896041.2 |
|---|---|
| Location | 176-931 |
| Gene Name | AV1 |
| Protein Name | AV1 |
| Coding Region | ATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAA |
| Protein Sequence | MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMYRKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISRIGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRSYFYDSITN |
| NCBI Accession | YP_003896042.1 |
|---|---|
| Location | 928-1326 |
| Gene Name | AC3 |
| Protein Name | AC3 |
| Coding Region | ATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAGATTTAGACATTTAGTTTTATTTTATTTAGATAATTTAGGAGTTATTTCTATTAACAATGTAATTAGATCTGTTCGATTTGCAACAGATAAACCATATGTAAATCATGTACTTGAGAATCATTCAATAAAAATTAAACTTTATTAA |
| Protein Sequence | MDSRTGENITVHQAENSVFIWEVPNPLYFKIQNVEDIPSTTTRVYHIQIRFNHNLRKSLQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINNVIRSVRFATDKPYVNHVLENHSIKIKLY |
| NCBI Accession | YP_003896043.1 |
|---|---|
| Location | 1073-1462 |
| Gene Name | AC2 |
| Protein Name | AC2 |
| Coding Region | ATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAAGATTGCCAAGGCAAAGCCCATCAGAAGGAAACGCATAGACCTAGACTGTGGCTGCTCATTCTTCCTGCATATTAACTGTGTTAATAATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAG |
| Protein Sequence | MQNSSSSTPPSIKTRHKIAKAKPIRRKRIDLDCGCSFFLHINCVNNGFTHRGEHHCASGREFRFYLGGTKSPLFQDTERGRHTVHNDESIPHPNTVQPQPEEVASTTQSLLELPSLDDISSSFWDDIFK |
| NCBI Accession | YP_003896044.1 |
|---|---|
| Location | 1413-2459 |
| Gene Name | AC1 |
| Protein Name | AC1 |
| Coding Region | ATGCCCCCACCTAAGGCCTTTAAGATAAATGCAAAAAATTATTTTCTTACATATCCCCACTGCAATTTAACCAAAGAAGAAGCACTTTCCCAATTGCAAAATCTAGAGACACCCACAAATAAGAAATATATCAAAATTGCAAGGGAACTTCACGAAGATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAAATAGCGGTAGCAAAGAGGCAGCCCTCCAAATAATAAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAAATTGTAATTTAGATAAAATTTTTTCGAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCACTCTCCTCCTTCACTAACGTCCCGGAGGAGATGCAAGAATGGGCTGATGATTATTTTGGTAGGGGTGCCGCTGCGCGGCCAGAAAGACCTATCAGTATAATAATAGAGGGATGTTCAAGGACAGGTAAGACTATGTGGGCTCGTGCACTAGGCCCACATAATTATCTGAGTGGACACCTGGATTTTAATTCCAAAGTTTATTCAAATGGAGCGGACTATAACGTCATTGATGACGTCAGTCCGCAATATTTAAAGATGAAACATTGGAAAGAGCTGATAGGGGCCCAGAAAGATTGGCAATCAAACTGTAAATACGGAAAGCCAATTCAAATTAAAGGTGGCATACCCTCTATCGTGCTCTGCAATCCAGGAGAGGGACAGAGCTATAAAGACTTCCTTGAGAAAGAGGAAAATGCAGCTCTAAGAGCGTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAA |
| Protein Sequence | MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIKIARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYVDKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFHNLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEGCSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQKDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLEKEENAALRAWTLHNAKFIFLNSSLYQNEA |
| NCBI Accession | YP_003896045.1 |
|---|---|
| Location | 2045-2302 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAA |
| Protein Sequence | MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPAPTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP |
References More References in PubMed
| 1 |
Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China. Li R, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print. PMID: 36281022 |
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| 2 |
Zhang S, et al. Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22. PMID: 35598295 |
| 3 |
Souza-Dias JAC, et al. Plant Dis. 2008 Mar;92(3):487. doi: 10.1094/PDIS-92-3-0487C. PMID: 30769698 |
| 4 |
Sabra A, et al. Plants (Basel). 2022 Nov 18;11(22):3157. doi: 10.3390/plants11223157. PMID: 36432886 |
| 5 |
Martins TP, et al. Arch Virol. 2021 Nov;166(11):3217-3220. doi: 10.1007/s00705-021-05220-w. Epub 2021 Sep 8. PMID: 34498121 |
| 6 |
Nava A, et al. Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14. PMID: 23064695 |
| 7 |
First report of tomato leaf curl New Delhi virus infecting several cucurbit plants in China. Gu Q, et al. Plant Dis. 2023 Apr 20. doi: 10.1094/PDIS-01-23-0180-PDN. Online ahead of print. PMID: 37081636 |
| 8 |
First Report of Tomato rugose yellow leaf curl virus Infecting Tomato in Argentina. Guerrero EB, et al. Plant Dis. 2013 Dec;97(12):1662. doi: 10.1094/PDIS-01-13-0003-PDN. PMID: 30716848 |
| 9 |
First Report of Tomato black ring virus (TBRV) on Tomato (Solanum lycopersicum) in Saudi Arabia. Al-Shahwan I, et al. Plant Dis. 2020 Oct 12. doi: 10.1094/PDIS-05-20-1149-PDN. Online ahead of print. PMID: 33044144 |
| 10 |
Identification of Tomato black ring virus from tomato plants grown in greenhouses in Saudi Arabia. Al-Shudifat AM, et al. Saudi J Biol Sci. 2021 Apr;28(4):2360-2365. doi: 10.1016/j.sjbs.2021.01.031. Epub 2021 Jan 28. PMID: 33911950 |