Tomato leaf deformation virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000888595.1
Isolate Peru: Carabayllo
Release date 2015/2/22
Submitter Marquez-Martin,B., Aragon-Caballero,L., Fiallo-Olive,E., Navas-Castillo,J., Moriones,E.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014510
ACCGGATGGCCGCGCGATTTTTTTACCCCCTTGTTAAGTTTGGGACCACACATATACGGACAAAACCTTTTGTCCAATCATAGAGCGTCTGACGAGCTTAATTATTAAATTCCTTTAGACTGAGTGGTCTATAAAGACCCAGACAAACTGTAATAATTGATATCTTTAACTCAAAATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAATAAAGTTTAATTTTTATTGAATGATTCTCAAGTACATGATTTACATATGGTTTATCTGTTGCAAATCGAACAGATCTAATTACATTGTTAATAGAAATAACTCCTAAATTATCTAAATAAAATAAAACTAAATGTCTAAATCTATTTAAATATGTCGTCCCAGAAGCTTGAACTGATGTCGTCCAGACTTGGAAGTTCAAGAAGGCTTTGTGTAGTTGAAGCGACTTCCTCAGGTTGTGGTTGAACCGTATTTGGATGTGGTATACTCTCGTCGTTGTGGACGGTATGTCTTCCACGTTCTGTATCTTGAAATAAAGGGGATTTGGTACCTCCCAGATAAAAACGGAATTCTCTGCCTGATGCACAGTGATGTTCTCCCCGGTGCGTGAATCCATTATTAACACAGTTAATATGCAGGAAGAATGAGCAGCCACAGTCTAGGTCTATGCGTTTCCTTCTGATGGGCTTTGCCTTGGCAATCTTATGCCTCGTTTTGATAGAGGGAGGAGTTGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGCTCTTAGAGCTGCATTTTCCTCTTTCTCAAGGAAGTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTTAATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTCCGCTCCATTTGAATAAACTTTGGAATTAAAATCCAGGTGTCCACTCAGATAATTATGTGGGCCTAGTGCACGAGCCCACATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTATACTGATAGGTCTTTCTGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCATTCTTGCATCTCCTCCGGGACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAGACCATGGCTCCGGAGCCTTCGAAAAAATTTTATCTAAATTACAATTTAAATTATGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTTATTATTTGGAGGGCTGCCTCTTTGCTACCGCTATTTAAGGCTTCTGCGGCAGCGTCGTTAGCAGTTTGGCTGCCTCCTCTAGCACTTCTGCCGTCGACTTGGAATTCTCCCCATTCAAGTGTATCTCCGTCCTTGTCGACGTAGGCGTTGACGTCGGTGCTGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTTACATTGGAATTTGCCTTGGAACTGGAGTAGCACGTGGAGATGATGTTGCCCATCTTCGTGAAGTTCCCTTGCAATTTTGATATATTTCTTATTTGTGGGTGTCTCTAGATTTTGCAATTGGGAAAGTGCTTCTTCTTTGGTTAAATTGCAGTGGGGATATGTAAGAAAATAATTTTTTGCATTTATCTTAAAGGCCTTAGGTGGGGGCATTTTGGTAATAAATATTTTGGACACCGATTGGTTTGGCTTCTAAAACTTATAGCAATCGGTGTACTGGAGTCTTATTTATAGTAGGAGTTCCTAAAGGATCTAGCAACACGTGGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_003896041.2
Location 176-931
Gene Name AV1
Protein Name AV1
Coding Region ATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAA
Protein Sequence MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMYRKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISRIGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRSYFYDSITN

NCBI Accession YP_003896042.1
Location 928-1326
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAGATTTAGACATTTAGTTTTATTTTATTTAGATAATTTAGGAGTTATTTCTATTAACAATGTAATTAGATCTGTTCGATTTGCAACAGATAAACCATATGTAAATCATGTACTTGAGAATCATTCAATAAAAATTAAACTTTATTAA
Protein Sequence MDSRTGENITVHQAENSVFIWEVPNPLYFKIQNVEDIPSTTTRVYHIQIRFNHNLRKSLQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINNVIRSVRFATDKPYVNHVLENHSIKIKLY

NCBI Accession YP_003896043.1
Location 1073-1462
Gene Name AC2
Protein Name AC2
Coding Region ATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAAGATTGCCAAGGCAAAGCCCATCAGAAGGAAACGCATAGACCTAGACTGTGGCTGCTCATTCTTCCTGCATATTAACTGTGTTAATAATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAG
Protein Sequence MQNSSSSTPPSIKTRHKIAKAKPIRRKRIDLDCGCSFFLHINCVNNGFTHRGEHHCASGREFRFYLGGTKSPLFQDTERGRHTVHNDESIPHPNTVQPQPEEVASTTQSLLELPSLDDISSSFWDDIFK

NCBI Accession YP_003896044.1
Location 1413-2459
Gene Name AC1
Protein Name AC1
Coding Region ATGCCCCCACCTAAGGCCTTTAAGATAAATGCAAAAAATTATTTTCTTACATATCCCCACTGCAATTTAACCAAAGAAGAAGCACTTTCCCAATTGCAAAATCTAGAGACACCCACAAATAAGAAATATATCAAAATTGCAAGGGAACTTCACGAAGATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAAATAGCGGTAGCAAAGAGGCAGCCCTCCAAATAATAAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAAATTGTAATTTAGATAAAATTTTTTCGAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCACTCTCCTCCTTCACTAACGTCCCGGAGGAGATGCAAGAATGGGCTGATGATTATTTTGGTAGGGGTGCCGCTGCGCGGCCAGAAAGACCTATCAGTATAATAATAGAGGGATGTTCAAGGACAGGTAAGACTATGTGGGCTCGTGCACTAGGCCCACATAATTATCTGAGTGGACACCTGGATTTTAATTCCAAAGTTTATTCAAATGGAGCGGACTATAACGTCATTGATGACGTCAGTCCGCAATATTTAAAGATGAAACATTGGAAAGAGCTGATAGGGGCCCAGAAAGATTGGCAATCAAACTGTAAATACGGAAAGCCAATTCAAATTAAAGGTGGCATACCCTCTATCGTGCTCTGCAATCCAGGAGAGGGACAGAGCTATAAAGACTTCCTTGAGAAAGAGGAAAATGCAGCTCTAAGAGCGTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAA
Protein Sequence MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIKIARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYVDKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFHNLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEGCSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQKDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLEKEENAALRAWTLHNAKFIFLNSSLYQNEA

NCBI Accession YP_003896045.1
Location 2045-2302
Gene Name AC4
Protein Name AC4
Coding Region ATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAA
Protein Sequence MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPAPTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP

References More References in PubMed

1

Tomato brown rugose fruit virus: An emerging and rapidly spreading plant RNA virus that threatens tomato production worldwide.

Zhang S, et al.  Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22.

PMID: 35598295
2

Detection of Tomato Leaf Curl New Delhi Virus-ES by Real-Time Quantitative PCR.

Janssen D, et al.  Methods Mol Biol. 2025;2912:145-156. doi: 10.1007/978-1-0716-4454-6_12.

PMID: 40064778
3

First Report of Tomato rugose yellow leaf curl virus Infecting Tomato in Argentina.

Guerrero EB, et al.  Plant Dis. 2013 Dec;97(12):1662. doi: 10.1094/PDIS-01-13-0003-PDN.

PMID: 30716848
4

Occurrence and Distribution of Tomato Brown Rugose Fruit Virus Infecting Tomato Crop in Saudi Arabia.

Sabra A, et al.  Plants (Basel). 2022 Nov 18;11(22):3157. doi: 10.3390/plants11223157.

PMID: 36432886
5

Biological and Molecular Characterization of a New Isolate of Tomato Mottle Mosaic Virus Causing Severe Shoestring and Fruit Deformities in Tomato Plants in India.

Mazumder P, et al.  Plants (Basel). 2024 Oct 8;13(19):2811. doi: 10.3390/plants13192811.

PMID: 39409680
6

Tomato severe rugose virus: Another Begomovirus Causing Leaf Deformation and Mosaic Symptoms on Potato in Brazil.

Souza-Dias JAC, et al.  Plant Dis. 2008 Mar;92(3):487. doi: 10.1094/PDIS-92-3-0487C.

PMID: 30769698
7

Fulfilling Koch's postulates confirms the monopartite nature of tomato leaf deformation virus: a begomovirus native to the New World.

Sánchez-Campos S, et al.  Virus Res. 2013 May;173(2):286-93. doi: 10.1016/j.virusres.2013.02.002. Epub 2013 Feb 13.

PMID: 23415858
8

Characterization and distribution of tomato yellow margin leaf curl virus, a begomovirus from Venezuela.

Nava A, et al.  Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14.

PMID: 23064695
9

C4, the Pathogenic Determinant of Tomato Leaf Curl Guangdong Virus, May Suppress Post-transcriptional Gene Silencing by Interacting With BAM1 Protein.

Li Z, et al.  Front Microbiol. 2020 May 5;11:851. doi: 10.3389/fmicb.2020.00851. eCollection 2020.

PMID: 32431688
10

Nanopore sequencing of tomato mottle leaf distortion virus, a new bipartite begomovirus infecting tomato in Brazil.

Martins TP, et al.  Arch Virol. 2021 Nov;166(11):3217-3220. doi: 10.1007/s00705-021-05220-w. Epub 2021 Sep 8.

PMID: 34498121