Tomato leaf deformation virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000888595.1
Isolate Peru: Carabayllo
Release date 2015/2/22
Submitter Marquez-Martin,B., Aragon-Caballero,L., Fiallo-Olive,E., Navas-Castillo,J., Moriones,E.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_014510
ACCGGATGGCCGCGCGATTTTTTTACCCCCTTGTTAAGTTTGGGACCACACATATACGGACAAAACCTTTTGTCCAATCATAGAGCGTCTGACGAGCTTAATTATTAAATTCCTTTAGACTGAGTGGTCTATAAAGACCCAGACAAACTGTAATAATTGATATCTTTAACTCAAAATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAATAAAGTTTAATTTTTATTGAATGATTCTCAAGTACATGATTTACATATGGTTTATCTGTTGCAAATCGAACAGATCTAATTACATTGTTAATAGAAATAACTCCTAAATTATCTAAATAAAATAAAACTAAATGTCTAAATCTATTTAAATATGTCGTCCCAGAAGCTTGAACTGATGTCGTCCAGACTTGGAAGTTCAAGAAGGCTTTGTGTAGTTGAAGCGACTTCCTCAGGTTGTGGTTGAACCGTATTTGGATGTGGTATACTCTCGTCGTTGTGGACGGTATGTCTTCCACGTTCTGTATCTTGAAATAAAGGGGATTTGGTACCTCCCAGATAAAAACGGAATTCTCTGCCTGATGCACAGTGATGTTCTCCCCGGTGCGTGAATCCATTATTAACACAGTTAATATGCAGGAAGAATGAGCAGCCACAGTCTAGGTCTATGCGTTTCCTTCTGATGGGCTTTGCCTTGGCAATCTTATGCCTCGTTTTGATAGAGGGAGGAGTTGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGCTCTTAGAGCTGCATTTTCCTCTTTCTCAAGGAAGTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTTAATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTCCGCTCCATTTGAATAAACTTTGGAATTAAAATCCAGGTGTCCACTCAGATAATTATGTGGGCCTAGTGCACGAGCCCACATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTATACTGATAGGTCTTTCTGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCATTCTTGCATCTCCTCCGGGACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAGACCATGGCTCCGGAGCCTTCGAAAAAATTTTATCTAAATTACAATTTAAATTATGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTTATTATTTGGAGGGCTGCCTCTTTGCTACCGCTATTTAAGGCTTCTGCGGCAGCGTCGTTAGCAGTTTGGCTGCCTCCTCTAGCACTTCTGCCGTCGACTTGGAATTCTCCCCATTCAAGTGTATCTCCGTCCTTGTCGACGTAGGCGTTGACGTCGGTGCTGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTTACATTGGAATTTGCCTTGGAACTGGAGTAGCACGTGGAGATGATGTTGCCCATCTTCGTGAAGTTCCCTTGCAATTTTGATATATTTCTTATTTGTGGGTGTCTCTAGATTTTGCAATTGGGAAAGTGCTTCTTCTTTGGTTAAATTGCAGTGGGGATATGTAAGAAAATAATTTTTTGCATTTATCTTAAAGGCCTTAGGTGGGGGCATTTTGGTAATAAATATTTTGGACACCGATTGGTTTGGCTTCTAAAACTTATAGCAATCGGTGTACTGGAGTCTTATTTATAGTAGGAGTTCCTAAAGGATCTAGCAACACGTGGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_003896041.2
Location 176-931
Gene Name AV1
Protein Name AV1
Coding Region ATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAA
Protein Sequence MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMYRKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISRIGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRSYFYDSITN

NCBI Accession YP_003896042.1
Location 928-1326
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAGATTTAGACATTTAGTTTTATTTTATTTAGATAATTTAGGAGTTATTTCTATTAACAATGTAATTAGATCTGTTCGATTTGCAACAGATAAACCATATGTAAATCATGTACTTGAGAATCATTCAATAAAAATTAAACTTTATTAA
Protein Sequence MDSRTGENITVHQAENSVFIWEVPNPLYFKIQNVEDIPSTTTRVYHIQIRFNHNLRKSLQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINNVIRSVRFATDKPYVNHVLENHSIKIKLY

NCBI Accession YP_003896043.1
Location 1073-1462
Gene Name AC2
Protein Name AC2
Coding Region ATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAAGATTGCCAAGGCAAAGCCCATCAGAAGGAAACGCATAGACCTAGACTGTGGCTGCTCATTCTTCCTGCATATTAACTGTGTTAATAATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAG
Protein Sequence MQNSSSSTPPSIKTRHKIAKAKPIRRKRIDLDCGCSFFLHINCVNNGFTHRGEHHCASGREFRFYLGGTKSPLFQDTERGRHTVHNDESIPHPNTVQPQPEEVASTTQSLLELPSLDDISSSFWDDIFK

NCBI Accession YP_003896044.1
Location 1413-2459
Gene Name AC1
Protein Name AC1
Coding Region ATGCCCCCACCTAAGGCCTTTAAGATAAATGCAAAAAATTATTTTCTTACATATCCCCACTGCAATTTAACCAAAGAAGAAGCACTTTCCCAATTGCAAAATCTAGAGACACCCACAAATAAGAAATATATCAAAATTGCAAGGGAACTTCACGAAGATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAAATAGCGGTAGCAAAGAGGCAGCCCTCCAAATAATAAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAAATTGTAATTTAGATAAAATTTTTTCGAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCACTCTCCTCCTTCACTAACGTCCCGGAGGAGATGCAAGAATGGGCTGATGATTATTTTGGTAGGGGTGCCGCTGCGCGGCCAGAAAGACCTATCAGTATAATAATAGAGGGATGTTCAAGGACAGGTAAGACTATGTGGGCTCGTGCACTAGGCCCACATAATTATCTGAGTGGACACCTGGATTTTAATTCCAAAGTTTATTCAAATGGAGCGGACTATAACGTCATTGATGACGTCAGTCCGCAATATTTAAAGATGAAACATTGGAAAGAGCTGATAGGGGCCCAGAAAGATTGGCAATCAAACTGTAAATACGGAAAGCCAATTCAAATTAAAGGTGGCATACCCTCTATCGTGCTCTGCAATCCAGGAGAGGGACAGAGCTATAAAGACTTCCTTGAGAAAGAGGAAAATGCAGCTCTAAGAGCGTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAA
Protein Sequence MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIKIARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYVDKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFHNLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEGCSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQKDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLEKEENAALRAWTLHNAKFIFLNSSLYQNEA

NCBI Accession YP_003896045.1
Location 2045-2302
Gene Name AC4
Protein Name AC4
Coding Region ATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAA
Protein Sequence MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPAPTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP

References More References in PubMed

1

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022

2

Tomato brown rugose fruit virus: An emerging and rapidly spreading plant RNA virus that threatens tomato production worldwide.

Zhang S, et al.  Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22.

PMID: 35598295

3

Tomato severe rugose virus: Another Begomovirus Causing Leaf Deformation and Mosaic Symptoms on Potato in Brazil.

Souza-Dias JAC, et al.  Plant Dis. 2008 Mar;92(3):487. doi: 10.1094/PDIS-92-3-0487C.

PMID: 30769698

4

Occurrence and Distribution of Tomato Brown Rugose Fruit Virus Infecting Tomato Crop in Saudi Arabia.

Sabra A, et al.  Plants (Basel). 2022 Nov 18;11(22):3157. doi: 10.3390/plants11223157.

PMID: 36432886

5

Nanopore sequencing of tomato mottle leaf distortion virus, a new bipartite begomovirus infecting tomato in Brazil.

Martins TP, et al.  Arch Virol. 2021 Nov;166(11):3217-3220. doi: 10.1007/s00705-021-05220-w. Epub 2021 Sep 8.

PMID: 34498121

6

Characterization and distribution of tomato yellow margin leaf curl virus, a begomovirus from Venezuela.

Nava A, et al.  Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14.

PMID: 23064695

7

First report of tomato leaf curl New Delhi virus infecting several cucurbit plants in China.

Gu Q, et al.  Plant Dis. 2023 Apr 20. doi: 10.1094/PDIS-01-23-0180-PDN. Online ahead of print.

PMID: 37081636

8

First Report of Tomato rugose yellow leaf curl virus Infecting Tomato in Argentina.

Guerrero EB, et al.  Plant Dis. 2013 Dec;97(12):1662. doi: 10.1094/PDIS-01-13-0003-PDN.

PMID: 30716848

9

First Report of Tomato black ring virus (TBRV) on Tomato (Solanum lycopersicum) in Saudi Arabia.

Al-Shahwan I, et al.  Plant Dis. 2020 Oct 12. doi: 10.1094/PDIS-05-20-1149-PDN. Online ahead of print.

PMID: 33044144

10

Identification of Tomato black ring virus from tomato plants grown in greenhouses in Saudi Arabia.

Al-Shudifat AM, et al.  Saudi J Biol Sci. 2021 Apr;28(4):2360-2365. doi: 10.1016/j.sjbs.2021.01.031. Epub 2021 Jan 28.

PMID: 33911950