Tomato leaf curl virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000838425.1 |
| Release date | 2015/2/12 |
| Submitter | Dry,I.B., Rigden,J.E., Krake,L.R., Mullineaux,P.M., Rezaian,M.A. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_003896
TAATATTACCGGATGGCCGCGAAAAAATAAAGTGGTCCCCCCCCACGTGATTGATGTGACCTGTCGACGAATGAGAACCGCGCGTCATCGCTTATTTAAGTTTTTTGTCGTATATATACTTGGGCCCTAAGTATTTAGGCCCATAAAATGTGGGATCCTTTAGTCCACGAATTTCCTGAAACCGTTCACGGTTTCCGTTGTATGCTCGCCAACAAATATTTGTTGGCTGTTGAATCAAAATACGCTCCGGATACATTGGGATACGAATTGATCAGGGATTGCATTGGGGTTGTTAGGTCTCGAAATTATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGATGTTCCACGGGGCTGTGAAGGCCCATGTAAGGTCCAATCATATGAGCAGCGTCATGATGTGGCCCATGTGGGTAAGGTCCTTTGTGTTTCTGATGTCACTAGGGGTACTGGAATAACGCATCGCACTGGGAAGAGATTTTGTATTAAATCTATTTATGTCCTGGGCAAGATCTGGATGGATGATAACATTAAGACTAGGAACCATACGAATACAGTTATGTTCTTCTTGGTCCGTGATAGGAGGCCCTATGGGACTCCTAAGGATTTTGGGCAGGTGTTCAACATGTATGACAATGAGCCCAGCACAGCTACTGTGAAGAACGACATGAGGGATGGCTTTCAAGTTATCAAGAAGTGGTCCGCAACTGTCACTGGTGGGCAATATGCGTCTAAGGAGCAGGCTATTATCAATAGGTTTTATAAAATATATAACCATTGTACTTACAATCATCAGGAAGCTGCAAAGTATGAGAATCATACTGAGAATGCATTATTATTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACGTTGAAGATACGGATCTATTTCTATGATTCGATTCAGAATTAATAAAAATTAAATTTTATATCATGATCTTCAATTACATCAAATGTTGAGTCTAGTACATTATACAATACATGATCAACTGATCTAATTACATTGTTAATGCTAATAACTCCTAAACTATCTAAATACTTCATGACTTGGGTCTTAAATACCCTCAAGAAACGCCAAGTCGCTGGTTGTAAGCGAGTGAAAACTGTGAAGTCCAGGAAGCATTTGTGTATCGCCAATGCTCTCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAGTTGAACGGGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCGCCATTCATCGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTATGGCAGTTGATATGCAGGTAGTAAGAACACCCGCACGGCAAATCAATTCTCTTCCTCCGGATGGACCTCTTCTTCGCTATTTTGTGTTGGACCTTGATAGGTACCTGAGTATAGTGGCTCGTTGAGGGTGATGAATTCTGCATTTTTTAAAGCCCAGGCTTTTAATGCGCTGTTTTTCTCCTCATCGAGGTACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTGCCGTACTTGGTGTTGCTTTGCCAATCTCTCTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATAATGCGGATCAACGTCATCAATGACGTTATACCACGCATCATTTGAATACACTTTAGGGCTTAAATCAAGGTGCCCACATAAATAATTATGTGGACCCAATGAACGCGCCCAAACAGTCTTCCCTGTTCTAGACTCACCCTCTATTACTATACTTATGGGTCTCAAAGGCCGCGCAGCGGCATCCTTCACATTCTCGGCGACCCACTCCTCGAGTTCTTCTGGAACTCGATCAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACATAATCCTTAGGGGCTAATTCCCTAAGGACGTTAAGAGCCTCTGACTTACTTCCAGTGTTAAGCGCCTGGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGACGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTGGGGGAGACCAGGTCGAAGAATCGTTGATTCTTGCACTGGAACTTGCCTTCGAACTGGATAAGCACGTGGAGATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAACTTTAATATATTTTTTGGATGTTGGGGTTTCTAGGTTATTTAATTGGGAAAGGGCTTCTTCTTTAGTGAGAGAGCATTTGGGATAAGTGAGGAAATAATTCTTAGCATTTATACGGAATGACTTTGGTCTAGTCATTGCGTTTTAGCAATTGGTGTCTCTCAACTTGGTAAATGAATCGGTGTCTGGGGTCTTATTTATAGTTGGACACCGTATGGCATTTTGGTAATTCGGAGAATTCTCAAAAGTAAATAATTCAAAATTCAAATCCCTCAAGCGGCCATCCGTC
Gene Information
| NCBI Accession | NP_632002.1 |
|---|---|
| Location | 148-495 |
| Gene Name | v1 |
| Protein Name | pre-coat protein |
| Coding Region | ATGTGGGATCCTTTAGTCCACGAATTTCCTGAAACCGTTCACGGTTTCCGTTGTATGCTCGCCAACAAATATTTGTTGGCTGTTGAATCAAAATACGCTCCGGATACATTGGGATACGAATTGATCAGGGATTGCATTGGGGTTGTTAGGTCTCGAAATTATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGA |
| Protein Sequence | MWDPLVHEFPETVHGFRCMLANKYLLAVESKYAPDTLGYELIRDCIGVVRSRNYEQATSRYRDIYTRLQGATEAELQQSVQERCCCPHCPRHKKADMGESAHVQKAHDVQAVQKP |
| NCBI Accession | NP_632003.1 |
|---|---|
| Location | 308-1078 |
| Gene Name | v2 |
| Protein Name | coat protein |
| Coding Region | ATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGATGTTCCACGGGGCTGTGAAGGCCCATGTAAGGTCCAATCATATGAGCAGCGTCATGATGTGGCCCATGTGGGTAAGGTCCTTTGTGTTTCTGATGTCACTAGGGGTACTGGAATAACGCATCGCACTGGGAAGAGATTTTGTATTAAATCTATTTATGTCCTGGGCAAGATCTGGATGGATGATAACATTAAGACTAGGAACCATACGAATACAGTTATGTTCTTCTTGGTCCGTGATAGGAGGCCCTATGGGACTCCTAAGGATTTTGGGCAGGTGTTCAACATGTATGACAATGAGCCCAGCACAGCTACTGTGAAGAACGACATGAGGGATGGCTTTCAAGTTATCAAGAAGTGGTCCGCAACTGTCACTGGTGGGCAATATGCGTCTAAGGAGCAGGCTATTATCAATAGGTTTTATAAAATATATAACCATTGTACTTACAATCATCAGGAAGCTGCAAAGTATGAGAATCATACTGAGAATGCATTATTATTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACGTTGAAGATACGGATCTATTTCTATGATTCGATTCAGAATTAA |
| Protein Sequence | MSKRPADIVISTPASKVRRKLNFNSPFKSAAAVPTVRVTRRRTWVNRPMYRKPMMYRLFRSPDVPRGCEGPCKVQSYEQRHDVAHVGKVLCVSDVTRGTGITHRTGKRFCIKSIYVLGKIWMDDNIKTRNHTNTVMFFLVRDRRPYGTPKDFGQVFNMYDNEPSTATVKNDMRDGFQVIKKWSATVTGGQYASKEQAIINRFYKIYNHCTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIQN |
| NCBI Accession | NP_632004.1 |
|---|---|
| Location | 1075-1479 |
| Gene Name | c3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCGATGAATGGCGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATCATAAAGCACCACAAGCGCCCGTTCAACTACAACCACGACATCATTCAAGTCCGGATACAGTTCAATCACAACCTGAGGAGAGCATTGGCGATACACAAATGCTTCCTGGACTTCACAGTTTTCACTCGCTTACAACCAGCGACTTGGCGTTTCTTGAGGGTATTTAAGACCCAAGTCATGAAGTATTTAGATAGTTTAGGAGTTATTAGCATTAACAATGTAATTAGATCAGTTGATCATGTATTGTATAATGTACTAGACTCAACATTTGATGTAATTGAAGATCATGATATAAAATTTAATTTTTATTAA |
| Protein Sequence | MDSRTGEPITARQAMNGEYIWRVPNPLYFKIIKHHKRPFNYNHDIIQVRIQFNHNLRRALAIHKCFLDFTVFTRLQPATWRFLRVFKTQVMKYLDSLGVISINNVIRSVDHVLYNVLDSTFDVIEDHDIKFNFY |
| NCBI Accession | NP_632005.1 |
|---|---|
| Location | 1220-1627 |
| Gene Name | c2 |
| Protein Name | transcriptional transactivator protein |
| Coding Region | ATGCAGAATTCATCACCCTCAACGAGCCACTATACTCAGGTACCTATCAAGGTCCAACACAAAATAGCGAAGAAGAGGTCCATCCGGAGGAAGAGAATTGATTTGCCGTGCGGGTGTTCTTACTACCTGCATATCAACTGCCATAACCATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCGATGAATGGCGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATCATAAAGCACCACAAGCGCCCGTTCAACTACAACCACGACATCATTCAAGTCCGGATACAGTTCAATCACAACCTGAGGAGAGCATTGGCGATACACAAATGCTTCCTGGACTTCACAGTTTTCACTCGCTTACAACCAGCGACTTGGCGTTTCTTGAGGGTATTTAA |
| Protein Sequence | MQNSSPSTSHYTQVPIKVQHKIAKKRSIRRKRIDLPCGCSYYLHINCHNHGFTHRGTHHCSSSDEWRVYLEGSKSPLFQDHKAPQAPVQLQPRHHSSPDTVQSQPEESIGDTQMLPGLHSFHSLTTSDLAFLEGI |
| NCBI Accession | NP_632006.1 |
|---|---|
| Location | 1527-2615 |
| Gene Name | c1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGACTAGACCAAAGTCATTCCGTATAAATGCTAAGAATTATTTCCTCACTTATCCCAAATGCTCTCTCACTAAAGAAGAAGCCCTTTCCCAATTAAATAACCTAGAAACCCCAACATCCAAAAAATATATTAAAGTTTGCAGAGAACTCCATGAGAATGGGGAGCCTCATCTCCACGTGCTTATCCAGTTCGAAGGCAAGTTCCAGTGCAAGAATCAACGATTCTTCGACCTGGTCTCCCCCACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCCAGGCGCTTAACACTGGAAGTAAGTCAGAGGCTCTTAACGTCCTTAGGGAATTAGCCCCTAAGGATTATGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTGATCGAGTTCCAGAAGAACTCGAGGAGTGGGTCGCCGAGAATGTGAAGGATGCCGCTGCGCGGCCTTTGAGACCCATAAGTATAGTAATAGAGGGTGAGTCTAGAACAGGGAAGACTGTTTGGGCGCGTTCATTGGGTCCACATAATTATTTATGTGGGCACCTTGATTTAAGCCCTAAAGTGTATTCAAATGATGCGTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTGAAACATTTCAAAGAATTCATGGGGGCCCAGAGAGATTGGCAAAGCAACACCAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGAATACCCACTATCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAGTACCTCGATGAGGAGAAAAACAGCGCATTAAAAGCCTGGGCTTTAAAAAATGCAGAATTCATCACCCTCAACGAGCCACTATACTCAGGTACCTATCAAGGTCCAACACAAAATAGCGAAGAAGAGGTCCATCCGGAGGAAGAGAATTGA |
| Protein Sequence | MTRPKSFRINAKNYFLTYPKCSLTKEEALSQLNNLETPTSKKYIKVCRELHENGEPHLHVLIQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLEWGEFQIDGRSARGGQQSANDAYAQALNTGSKSEALNVLRELAPKDYVLQFHNLNSNLDRIFTPPLEVYVSPFLSSSFDRVPEELEEWVAENVKDAAARPLRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKAWALKNAEFITLNEPLYSGTYQGPTQNSEEEVHPEEEN |
| NCBI Accession | NP_632007.1 |
|---|---|
| Location | 2156-2464 |
| Gene Name | c4 |
| Protein Name | C4 protein |
| Coding Region | ATGAGAATGGGGAGCCTCATCTCCACGTGCTTATCCAGTTCGAAGGCAAGTTCCAGTGCAAGAATCAACGATTCTTCGACCTGGTCTCCCCCACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCCAGGCGCTTAACACTGGAAGTAAGTCAGAGGCTCTTAACGTCCTTAGGGAATTAG |
| Protein Sequence | MRMGSLISTCLSSSKASSSARINDSSTWSPPPGQHISIRTFRELRARQTSSPIWRRTETPSNGESFRSMDDLQEGDNNQPMTLTPRRLTLEVSQRLLTSLGN |
References More References in PubMed
| 1 |
Tomato leaf curl Kunene virus: a novel tomato-infecting monopartite begomovirus from Namibia. Lett JM, et al. Arch Virol. 2020 Aug;165(8):1887-1889. doi: 10.1007/s00705-020-04666-8. Epub 2020 May 23. PMID: 32447622 |
|---|---|
| 2 |
Avedi EK, et al. Virol J. 2021 Jan 6;18(1):2. doi: 10.1186/s12985-020-01466-z. PMID: 33407584 |
| 3 |
Sharma N, et al. Plant Cell Rep. 2020 Nov;39(11):1565-1579. doi: 10.1007/s00299-020-02584-2. Epub 2020 Aug 29. PMID: 32860518 |
| 4 |
Silencing of tomato CTR1 provides enhanced tolerance against Tomato leaf curl virus infection. Chandan RK, et al. Plant Signal Behav. 2019;14(3):e1565595. doi: 10.1080/15592324.2019.1565595. Epub 2019 Jan 19. PMID: 30661468 |
| 5 |
Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus. Chatchawankanphanich O, et al. Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637. PMID: 18944261 |
| 6 |
A New Tomato leaf curl virus from Mayotte. Lett JM, et al. Plant Dis. 2004 Jun;88(6):681. doi: 10.1094/PDIS.2004.88.6.681B. PMID: 30812598 |
| 7 |
Muniyappa V, et al. Arch Virol. 2000;145(8):1583-98. doi: 10.1007/s007050070078. PMID: 11003471 |
| 8 |
Zaidi SS, et al. PLoS One. 2016 May 23;11(5):e0155520. doi: 10.1371/journal.pone.0155520. eCollection 2016. PMID: 27213535 |
| 9 |
First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh. Maruthi MN, et al. Plant Dis. 2005 Sep;89(9):1011. doi: 10.1094/PD-89-1011C. PMID: 30786642 |
| 10 |
Mei Y, et al. PLoS Pathog. 2018 Jan 2;14(1):e1006789. doi: 10.1371/journal.ppat.1006789. eCollection 2018 Jan. PMID: 29293689 |