Tomato leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000838425.1
Release date 2015/2/12
Submitter Dry,I.B., Rigden,J.E., Krake,L.R., Mullineaux,P.M., Rezaian,M.A.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003896
TAATATTACCGGATGGCCGCGAAAAAATAAAGTGGTCCCCCCCCACGTGATTGATGTGACCTGTCGACGAATGAGAACCGCGCGTCATCGCTTATTTAAGTTTTTTGTCGTATATATACTTGGGCCCTAAGTATTTAGGCCCATAAAATGTGGGATCCTTTAGTCCACGAATTTCCTGAAACCGTTCACGGTTTCCGTTGTATGCTCGCCAACAAATATTTGTTGGCTGTTGAATCAAAATACGCTCCGGATACATTGGGATACGAATTGATCAGGGATTGCATTGGGGTTGTTAGGTCTCGAAATTATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGATGTTCCACGGGGCTGTGAAGGCCCATGTAAGGTCCAATCATATGAGCAGCGTCATGATGTGGCCCATGTGGGTAAGGTCCTTTGTGTTTCTGATGTCACTAGGGGTACTGGAATAACGCATCGCACTGGGAAGAGATTTTGTATTAAATCTATTTATGTCCTGGGCAAGATCTGGATGGATGATAACATTAAGACTAGGAACCATACGAATACAGTTATGTTCTTCTTGGTCCGTGATAGGAGGCCCTATGGGACTCCTAAGGATTTTGGGCAGGTGTTCAACATGTATGACAATGAGCCCAGCACAGCTACTGTGAAGAACGACATGAGGGATGGCTTTCAAGTTATCAAGAAGTGGTCCGCAACTGTCACTGGTGGGCAATATGCGTCTAAGGAGCAGGCTATTATCAATAGGTTTTATAAAATATATAACCATTGTACTTACAATCATCAGGAAGCTGCAAAGTATGAGAATCATACTGAGAATGCATTATTATTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACGTTGAAGATACGGATCTATTTCTATGATTCGATTCAGAATTAATAAAAATTAAATTTTATATCATGATCTTCAATTACATCAAATGTTGAGTCTAGTACATTATACAATACATGATCAACTGATCTAATTACATTGTTAATGCTAATAACTCCTAAACTATCTAAATACTTCATGACTTGGGTCTTAAATACCCTCAAGAAACGCCAAGTCGCTGGTTGTAAGCGAGTGAAAACTGTGAAGTCCAGGAAGCATTTGTGTATCGCCAATGCTCTCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAGTTGAACGGGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCGCCATTCATCGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTATGGCAGTTGATATGCAGGTAGTAAGAACACCCGCACGGCAAATCAATTCTCTTCCTCCGGATGGACCTCTTCTTCGCTATTTTGTGTTGGACCTTGATAGGTACCTGAGTATAGTGGCTCGTTGAGGGTGATGAATTCTGCATTTTTTAAAGCCCAGGCTTTTAATGCGCTGTTTTTCTCCTCATCGAGGTACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTGCCGTACTTGGTGTTGCTTTGCCAATCTCTCTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATAATGCGGATCAACGTCATCAATGACGTTATACCACGCATCATTTGAATACACTTTAGGGCTTAAATCAAGGTGCCCACATAAATAATTATGTGGACCCAATGAACGCGCCCAAACAGTCTTCCCTGTTCTAGACTCACCCTCTATTACTATACTTATGGGTCTCAAAGGCCGCGCAGCGGCATCCTTCACATTCTCGGCGACCCACTCCTCGAGTTCTTCTGGAACTCGATCAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACATAATCCTTAGGGGCTAATTCCCTAAGGACGTTAAGAGCCTCTGACTTACTTCCAGTGTTAAGCGCCTGGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGACGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTGGGGGAGACCAGGTCGAAGAATCGTTGATTCTTGCACTGGAACTTGCCTTCGAACTGGATAAGCACGTGGAGATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAACTTTAATATATTTTTTGGATGTTGGGGTTTCTAGGTTATTTAATTGGGAAAGGGCTTCTTCTTTAGTGAGAGAGCATTTGGGATAAGTGAGGAAATAATTCTTAGCATTTATACGGAATGACTTTGGTCTAGTCATTGCGTTTTAGCAATTGGTGTCTCTCAACTTGGTAAATGAATCGGTGTCTGGGGTCTTATTTATAGTTGGACACCGTATGGCATTTTGGTAATTCGGAGAATTCTCAAAAGTAAATAATTCAAAATTCAAATCCCTCAAGCGGCCATCCGTC

Gene Information

NCBI Accession NP_632002.1
Location 148-495
Gene Name v1
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTTTAGTCCACGAATTTCCTGAAACCGTTCACGGTTTCCGTTGTATGCTCGCCAACAAATATTTGTTGGCTGTTGAATCAAAATACGCTCCGGATACATTGGGATACGAATTGATCAGGGATTGCATTGGGGTTGTTAGGTCTCGAAATTATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGA
Protein Sequence MWDPLVHEFPETVHGFRCMLANKYLLAVESKYAPDTLGYELIRDCIGVVRSRNYEQATSRYRDIYTRLQGATEAELQQSVQERCCCPHCPRHKKADMGESAHVQKAHDVQAVQKP

NCBI Accession NP_632003.1
Location 308-1078
Gene Name v2
Protein Name coat protein
Coding Region ATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGATGTTCCACGGGGCTGTGAAGGCCCATGTAAGGTCCAATCATATGAGCAGCGTCATGATGTGGCCCATGTGGGTAAGGTCCTTTGTGTTTCTGATGTCACTAGGGGTACTGGAATAACGCATCGCACTGGGAAGAGATTTTGTATTAAATCTATTTATGTCCTGGGCAAGATCTGGATGGATGATAACATTAAGACTAGGAACCATACGAATACAGTTATGTTCTTCTTGGTCCGTGATAGGAGGCCCTATGGGACTCCTAAGGATTTTGGGCAGGTGTTCAACATGTATGACAATGAGCCCAGCACAGCTACTGTGAAGAACGACATGAGGGATGGCTTTCAAGTTATCAAGAAGTGGTCCGCAACTGTCACTGGTGGGCAATATGCGTCTAAGGAGCAGGCTATTATCAATAGGTTTTATAAAATATATAACCATTGTACTTACAATCATCAGGAAGCTGCAAAGTATGAGAATCATACTGAGAATGCATTATTATTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACGTTGAAGATACGGATCTATTTCTATGATTCGATTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRKLNFNSPFKSAAAVPTVRVTRRRTWVNRPMYRKPMMYRLFRSPDVPRGCEGPCKVQSYEQRHDVAHVGKVLCVSDVTRGTGITHRTGKRFCIKSIYVLGKIWMDDNIKTRNHTNTVMFFLVRDRRPYGTPKDFGQVFNMYDNEPSTATVKNDMRDGFQVIKKWSATVTGGQYASKEQAIINRFYKIYNHCTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIQN

NCBI Accession NP_632004.1
Location 1075-1479
Gene Name c3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCGATGAATGGCGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATCATAAAGCACCACAAGCGCCCGTTCAACTACAACCACGACATCATTCAAGTCCGGATACAGTTCAATCACAACCTGAGGAGAGCATTGGCGATACACAAATGCTTCCTGGACTTCACAGTTTTCACTCGCTTACAACCAGCGACTTGGCGTTTCTTGAGGGTATTTAAGACCCAAGTCATGAAGTATTTAGATAGTTTAGGAGTTATTAGCATTAACAATGTAATTAGATCAGTTGATCATGTATTGTATAATGTACTAGACTCAACATTTGATGTAATTGAAGATCATGATATAAAATTTAATTTTTATTAA
Protein Sequence MDSRTGEPITARQAMNGEYIWRVPNPLYFKIIKHHKRPFNYNHDIIQVRIQFNHNLRRALAIHKCFLDFTVFTRLQPATWRFLRVFKTQVMKYLDSLGVISINNVIRSVDHVLYNVLDSTFDVIEDHDIKFNFY

NCBI Accession NP_632005.1
Location 1220-1627
Gene Name c2
Protein Name transcriptional transactivator protein
Coding Region ATGCAGAATTCATCACCCTCAACGAGCCACTATACTCAGGTACCTATCAAGGTCCAACACAAAATAGCGAAGAAGAGGTCCATCCGGAGGAAGAGAATTGATTTGCCGTGCGGGTGTTCTTACTACCTGCATATCAACTGCCATAACCATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCGATGAATGGCGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATCATAAAGCACCACAAGCGCCCGTTCAACTACAACCACGACATCATTCAAGTCCGGATACAGTTCAATCACAACCTGAGGAGAGCATTGGCGATACACAAATGCTTCCTGGACTTCACAGTTTTCACTCGCTTACAACCAGCGACTTGGCGTTTCTTGAGGGTATTTAA
Protein Sequence MQNSSPSTSHYTQVPIKVQHKIAKKRSIRRKRIDLPCGCSYYLHINCHNHGFTHRGTHHCSSSDEWRVYLEGSKSPLFQDHKAPQAPVQLQPRHHSSPDTVQSQPEESIGDTQMLPGLHSFHSLTTSDLAFLEGI

NCBI Accession NP_632006.1
Location 1527-2615
Gene Name c1
Protein Name replication-associated protein
Coding Region ATGACTAGACCAAAGTCATTCCGTATAAATGCTAAGAATTATTTCCTCACTTATCCCAAATGCTCTCTCACTAAAGAAGAAGCCCTTTCCCAATTAAATAACCTAGAAACCCCAACATCCAAAAAATATATTAAAGTTTGCAGAGAACTCCATGAGAATGGGGAGCCTCATCTCCACGTGCTTATCCAGTTCGAAGGCAAGTTCCAGTGCAAGAATCAACGATTCTTCGACCTGGTCTCCCCCACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCCAGGCGCTTAACACTGGAAGTAAGTCAGAGGCTCTTAACGTCCTTAGGGAATTAGCCCCTAAGGATTATGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTGATCGAGTTCCAGAAGAACTCGAGGAGTGGGTCGCCGAGAATGTGAAGGATGCCGCTGCGCGGCCTTTGAGACCCATAAGTATAGTAATAGAGGGTGAGTCTAGAACAGGGAAGACTGTTTGGGCGCGTTCATTGGGTCCACATAATTATTTATGTGGGCACCTTGATTTAAGCCCTAAAGTGTATTCAAATGATGCGTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTGAAACATTTCAAAGAATTCATGGGGGCCCAGAGAGATTGGCAAAGCAACACCAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGAATACCCACTATCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAGTACCTCGATGAGGAGAAAAACAGCGCATTAAAAGCCTGGGCTTTAAAAAATGCAGAATTCATCACCCTCAACGAGCCACTATACTCAGGTACCTATCAAGGTCCAACACAAAATAGCGAAGAAGAGGTCCATCCGGAGGAAGAGAATTGA
Protein Sequence MTRPKSFRINAKNYFLTYPKCSLTKEEALSQLNNLETPTSKKYIKVCRELHENGEPHLHVLIQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLEWGEFQIDGRSARGGQQSANDAYAQALNTGSKSEALNVLRELAPKDYVLQFHNLNSNLDRIFTPPLEVYVSPFLSSSFDRVPEELEEWVAENVKDAAARPLRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKAWALKNAEFITLNEPLYSGTYQGPTQNSEEEVHPEEEN

NCBI Accession NP_632007.1
Location 2156-2464
Gene Name c4
Protein Name C4 protein
Coding Region ATGAGAATGGGGAGCCTCATCTCCACGTGCTTATCCAGTTCGAAGGCAAGTTCCAGTGCAAGAATCAACGATTCTTCGACCTGGTCTCCCCCACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCCAGGCGCTTAACACTGGAAGTAAGTCAGAGGCTCTTAACGTCCTTAGGGAATTAG
Protein Sequence MRMGSLISTCLSSSKASSSARINDSSTWSPPPGQHISIRTFRELRARQTSSPIWRRTETPSNGESFRSMDDLQEGDNNQPMTLTPRRLTLEVSQRLLTSLGN

References More References in PubMed

1

Tomato leaf curl Kunene virus: a novel tomato-infecting monopartite begomovirus from Namibia.

Lett JM, et al.  Arch Virol. 2020 Aug;165(8):1887-1889. doi: 10.1007/s00705-020-04666-8. Epub 2020 May 23.

PMID: 32447622

2

Metagenomic analyses and genetic diversity of Tomato leaf curl Arusha virus affecting tomato plants in Kenya.

Avedi EK, et al.  Virol J. 2021 Jan 6;18(1):2. doi: 10.1186/s12985-020-01466-z.

PMID: 33407584

3

A New Tomato leaf curl virus from Mayotte.

Lett JM, et al.  Plant Dis. 2004 Jun;88(6):681. doi: 10.1094/PDIS.2004.88.6.681B.

PMID: 30812598

4

Silencing AC1 of Tomato leaf curl virus using artificial microRNA confers resistance to leaf curl disease in transgenic tomato.

Sharma N, et al.  Plant Cell Rep. 2020 Nov;39(11):1565-1579. doi: 10.1007/s00299-020-02584-2. Epub 2020 Aug 29.

PMID: 32860518

5

Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus.

Chatchawankanphanich O, et al.  Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637.

PMID: 18944261

6

Nano-PCR for the early detection of tomato leaf curl virus.

Devika PP, et al.  3 Biotech. 2024 Jan;14(1):5. doi: 10.1007/s13205-023-03842-2. Epub 2023 Dec 6.

PMID: 38074290

7

Silencing of tomato CTR1 provides enhanced tolerance against Tomato leaf curl virus infection.

Chandan RK, et al.  Plant Signal Behav. 2019;14(3):e1565595. doi: 10.1080/15592324.2019.1565595. Epub 2019 Jan 19.

PMID: 30661468

8

MicroRNAs as biomarkers in tomato leaf curl virus (ToLCV) disease.

Naqvi AR, et al.  Nucleic Acids Symp Ser (Oxf). 2008;(52):507-8. doi: 10.1093/nass/nrn257.

PMID: 18776476

9

Tomato leaf curl virus from Bangalore (ToLCV-Ban4): sequence comparison with Indian ToLCV isolates, detection in plants and insects, and vector relationships.

Muniyappa V, et al.  Arch Virol. 2000;145(8):1583-98. doi: 10.1007/s007050070078.

PMID: 11003471

10

Tomato leaf curl Yunnan virus-encoded C4 induces cell division through enhancing stability of Cyclin D 1.1 via impairing NbSKη -mediated phosphorylation in Nicotiana benthamiana.

Mei Y, et al.  PLoS Pathog. 2018 Jan 2;14(1):e1006789. doi: 10.1371/journal.ppat.1006789. eCollection 2018 Jan.

PMID: 29293689