Boerhavia yellow spot virus

Basic Information

Genus	Begomovirus
NCBI Assembly	GCF_002821785.1
Isolate	Mexico
Release date	2018/8/25
Submitter	Hernandez-Zepeda,C., Idris,A.M., Carnevali,G., Brown,J.K., Moreno-Valenzuela,O.A.
Host	Boerhavia coccinea
Vector	Bemisia tabaci
Download	Genome \|GFF3 \|PEP \|CDS

Genomic Organization

JBrowse

Genome

NC_038439

ACCGGATGGCCGCGATTTTTTTTGGACGGTCACGATTTGATTAGGCCCCACCACAAATGACAAAGCACTGCGTTTTGAGTGCCCCCCTTTAATTTGAACAGCTAGTGGACACGTGGTCCACCCATATTTCGTTTGTGGGGCCTATGTAATGACTTAACTGTTAAGTTGACAGGCAATAAATAGATGGTCCCCCCCATTATCTATTTTTGCTTTAATTTGAAATGCCTAAGCGGGACGCCCCTTGGCGCCTAATGGCTGGGCCCTCCAAGGTTAGCCGTAATGTCAATTATTCGCCTAGGGCTGGTCCCAAAGCTGATAAGCCGTCGATTTGGGCGAACAGGCCCATGTACAGGAAGCCAAGGTTTTACCGGCTATTCAGAACTCCAGACGTCCCCAAAGGATGTGAAGGGCCGTGTAAGGTCCAGTCGTTTGAGCAGCGCCATGATATATCCCATGTGGGTAAGGTCATGTGCATTTCCGACGTGACAAGGGGCAACGGCATTACGCACCGCGTTGGTAAGCGGTTCTGCGTCAAGTCTGTGTACATATTAGGCAAGGTGTGGATGGACGATAATATTAAACTGAAGAACCACACCAACATCGTCATGTTCTGGCTGGTCAGGGACCGGAGACCCTACGGCACTCCCATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCTAGTACTGCCACTGTGAAGAACGATCTGCGTGATCGGTTCCAAGTCATGCACAAGTTCCACGCGAAGGTTACCGGCGGTCAGTATGCCAGTAACGAGCAGTCCCTGGTGAAGAGATTCTGGAGGGTCAACAACCACGTGGTGTACAACCATCAGGAGGCTGCCAAGTACGAGAATCACACTGAGAACGCCCTGTTATTGTATATGGCATGTAGTCATGCCTCAAATCCTGTGTATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAAATTGAATTTTATTTCATGATTCTCGAGTACATGTTGTACATATGGTTTGTCTGTTGCAAACCGAACAGCTCTTATTACATTGTTTATACAGATGAGCCCTAGATTGTCTAGGTACAACATGACTAAGTGCCTAAATCTATTTAAATAAGTCGTCCCAGAAGCTCGAACTGATGTCGTCCAGACTTGGAAATTCAGGAAGGCCTTGTGTAGATGCAGTGCCCTCCTCAGGTTGTGGTTGAACCGGATCTGGACGTGGTATATCCTCGTGTCTATGTACGGGAGGTCCTCTATTTTCTGCATCCTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAGCGGAATTCTCTGCCTGACGAGCAGTGATGCTCTCCCCTGTGCGTGAATCCATAGTTTGCACAGCTGAGAGAGAGGAAAATAGTGCAGCCGCAGTTCAGGTCGATGCGTCGTCTCCGGATGGCTCTTCTCTTAGCAATCCTGTGTTGTGGTTTAATAGAGGGGGGAGTGGATGAAGATGAATTTTGCATTTTGCTCTGTCCACTCCCTGAGAGCTGCATTCTCCAATTTATTGAGGAAGTCTTTATAGCTGGACCCCTCGCCAGGATTGCAAAGCACGATTGATGGGATGCCACCTTTAATTTGAACTGGCTTGCCGTACTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGGCTGACATCATCGATGACGTTGTACATCACATCGTTTGAGTAAACCCTTGGATTGAAATCCAGGTGGCCACTCAGATAGTTGTGCCGCCCCAAAGCACGGGCCCACATTGTTTTGCCCACCCTCGAACCACCTTCAACGATTAAGCTTATAGGCCTGTGCGGCCGCGCAGCGGAATGGCCACCGAAATACTCATCAGCCCAGCATTGCATCTCCTCCGGCACATTTGTGAAAGAGGAAAGTTCAAATGGAGGAACCCATGGTTGAGGAGCCTTTGCGAAGATCCTCTCTAGGTTAGACTTCAGATTGTGATAATCTTTCACAAAGTCCCTTGGTTGTTCCTCCTTTAGAACTTGAAGTGCTTCTTGCACTCCAGATGCGTTCAGCGCCTTGGCGTATGAGTCGTTAGACGTCTGCTGACCTCCTCTAGCAGATCTCCCGTCGACCTGGAATTCCCCCCATTCAAGGGTATCTCCGTCCTTGTCAATGTAGGACTTGACATCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGAAACCAGGTCGAACTGTCGTTGATTCGTGATCTGGACTTTCCCTTCCAACTGCAAGAGCACATGGAGGTGAGGTTCCCCATTTTCGTGTAGCTCCCTGCAGATTTTAATGTATTTCTTGTTGGAAGGGAGCTGGAGAGACCTTATTTGCTGAAGAGCCGCTTCCTTTGTAAGCGAGCATTTGGGATATGTGAGGAAGATGTTTTTAGCTTGGAGTCTAAAACGTTTAGCCAGTGGCATTTTGTGTAAATAAGGGGTGTACTCCAATTGAGGTTCCCTTCAAAATGCTGAAACAATTGGAGTATTGGAGTACAATATATAGTAAGAGAAGTCAGTACATAGCGGCCATCCGATCTAATATT

Gene Information

NCBI Accession	YP_009506374.1
Location	222-971
Gene Name	AV1
Protein Name	coat protein
Coding Region	ATGCCTAAGCGGGACGCCCCTTGGCGCCTAATGGCTGGGCCCTCCAAGGTTAGCCGTAATGTCAATTATTCGCCTAGGGCTGGTCCCAAAGCTGATAAGCCGTCGATTTGGGCGAACAGGCCCATGTACAGGAAGCCAAGGTTTTACCGGCTATTCAGAACTCCAGACGTCCCCAAAGGATGTGAAGGGCCGTGTAAGGTCCAGTCGTTTGAGCAGCGCCATGATATATCCCATGTGGGTAAGGTCATGTGCATTTCCGACGTGACAAGGGGCAACGGCATTACGCACCGCGTTGGTAAGCGGTTCTGCGTCAAGTCTGTGTACATATTAGGCAAGGTGTGGATGGACGATAATATTAAACTGAAGAACCACACCAACATCGTCATGTTCTGGCTGGTCAGGGACCGGAGACCCTACGGCACTCCCATGGATTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCTAGTACTGCCACTGTGAAGAACGATCTGCGTGATCGGTTCCAAGTCATGCACAAGTTCCACGCGAAGGTTACCGGCGGTCAGTATGCCAGTAACGAGCAGTCCCTGGTGAAGAGATTCTGGAGGGTCAACAACCACGTGGTGTACAACCATCAGGAGGCTGCCAAGTACGAGAATCACACTGAGAACGCCCTGTTATTGTATATGGCATGTAGTCATGCCTCAAATCCTGTGTATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA
Protein Sequence	MPKRDAPWRLMAGPSKVSRNVNYSPRAGPKADKPSIWANRPMYRKPRFYRLFRTPDVPKGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNIVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFHAKVTGGQYASNEQSLVKRFWRVNNHVVYNHQEAAKYENHTENALLLYMACSHASNPVYATLKIRIYFYDSITN

NCBI Accession	YP_009506375.1
Location	968-1366
Gene Name	AC3
Protein Name	AC3
Coding Region	ATGGATTCACGCACAGGGGAGAGCATCACTGCTCGTCAGGCAGAGAATTCCGCTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAGGATGCAGAAAATAGAGGACCTCCCGTACATAGACACGAGGATATACCACGTCCAGATCCGGTTCAACCACAACCTGAGGAGGGCACTGCATCTACACAAGGCCTTCCTGAATTTCCAAGTCTGGACGACATCAGTTCGAGCTTCTGGGACGACTTATTTAAATAGATTTAGGCACTTAGTCATGTTGTACCTAGACAATCTAGGGCTCATCTGTATAAACAATGTAATAAGAGCTGTTCGGTTTGCAACAGACAAACCATATGTACAACATGTACTCGAGAATCATGAAATAAAATTCAATTTTTATTAA
Protein Sequence	MDSRTGESITARQAENSAFIWEVPNPLYFRMQKIEDLPYIDTRIYHVQIRFNHNLRRALHLHKAFLNFQVWTTSVRASGTTYLNRFRHLVMLYLDNLGLICINNVIRAVRFATDKPYVQHVLENHEIKFNFY

NCBI Accession	YP_009506376.1
Location	1113-1502
Gene Name	AC2
Protein Name	AC2
Coding Region	ATGCAAAATTCATCTTCATCCACTCCCCCCTCTATTAAACCACAACACAGGATTGCTAAGAGAAGAGCCATCCGGAGACGACGCATCGACCTGAACTGCGGCTGCACTATTTTCCTCTCTCTCAGCTGTGCAAACTATGGATTCACGCACAGGGGAGAGCATCACTGCTCGTCAGGCAGAGAATTCCGCTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAGGATGCAGAAAATAGAGGACCTCCCGTACATAGACACGAGGATATACCACGTCCAGATCCGGTTCAACCACAACCTGAGGAGGGCACTGCATCTACACAAGGCCTTCCTGAATTTCCAAGTCTGGACGACATCAGTTCGAGCTTCTGGGACGACTTATTTAAATAG
Protein Sequence	MQNSSSSTPPSIKPQHRIAKRRAIRRRRIDLNCGCTIFLSLSCANYGFTHRGEHHCSSGREFRFYLGGSKSPLFQDAENRGPPVHRHEDIPRPDPVQPQPEEGTASTQGLPEFPSLDDISSSFWDDLFK

NCBI Accession	YP_009506377.1
Location	1465-2499
Gene Name	AC1
Protein Name	replication protein
Coding Region	ATGCCACTGGCTAAACGTTTTAGACTCCAAGCTAAAAACATCTTCCTCACATATCCCAAATGCTCGCTTACAAAGGAAGCGGCTCTTCAGCAAATAAGGTCTCTCCAGCTCCCTTCCAACAAGAAATACATTAAAATCTGCAGGGAGCTACACGAAAATGGGGAACCTCACCTCCATGTGCTCTTGCAGTTGGAAGGGAAAGTCCAGATCACGAATCAACGACAGTTCGACCTGGTTTCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTACATTGACAAGGACGGAGATACCCTTGAATGGGGGGAATTCCAGGTCGACGGGAGATCTGCTAGAGGAGGTCAGCAGACGTCTAACGACTCATACGCCAAGGCGCTGAACGCATCTGGAGTGCAAGAAGCACTTCAAGTTCTAAAGGAGGAACAACCAAGGGACTTTGTGAAAGATTATCACAATCTGAAGTCTAACCTAGAGAGGATCTTCGCAAAGGCTCCTCAACCATGGGTTCCTCCATTTGAACTTTCCTCTTTCACAAATGTGCCGGAGGAGATGCAATGCTGGGCTGATGAGTATTTCGGTGGCCATTCCGCTGCGCGGCCGCACAGGCCTATAAGCTTAATCGTTGAAGGTGGTTCGAGGGTGGGCAAAACAATGTGGGCCCGTGCTTTGGGGCGGCACAACTATCTGAGTGGCCACCTGGATTTCAATCCAAGGGTTTACTCAAACGATGTGATGTACAACGTCATCGATGATGTCAGCCCGCATTATCTAAAGCTAAAGCACTGGAAAGAATTGATTGGGGCCCAAAGGGACTGGCAATCAAATTGCAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGCATCCCATCAATCGTGCTTTGCAATCCTGGCGAGGGGTCCAGCTATAAAGACTTCCTCAATAAATTGGAGAATGCAGCTCTCAGGGAGTGGACAGAGCAAAATGCAAAATTCATCTTCATCCACTCCCCCCTCTATTAA
Protein Sequence	MPLAKRFRLQAKNIFLTYPKCSLTKEAALQQIRSLQLPSNKKYIKICRELHENGEPHLHVLLQLEGKVQITNQRQFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGQQTSNDSYAKALNASGVQEALQVLKEEQPRDFVKDYHNLKSNLERIFAKAPQPWVPPFELSSFTNVPEEMQCWADEYFGGHSAARPHRPISLIVEGGSRVGKTMWARALGRHNYLSGHLDFNPRVYSNDVMYNVIDDVSPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLNKLENAALREWTEQNAKFIFIHSPLY

References More References in PubMed

1	Genetic variability of blainvillea yellow spot virus (Begomovirus blainvilleae) reveals recombinant variants and a distinct nonanucleotide motif. Gonçalves MHO, et al. Arch Virol. 2026 Jul 20;171(8):231. doi: 10.1007/s00705-026-06689-z. PMID: 42474804
2	Preliminary identification and coat protein gene phylogenetic relationships of begomoviruses associated with native flora and cultivated plants from the Yucatan Peninsula of Mexico. Hernández-Zepeda C, et al. Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8. PMID: 17682933

Genetic variability of blainvillea yellow spot virus (Begomovirus blainvilleae) reveals recombinant variants and a distinct nonanucleotide motif.

Gonçalves MHO, et al. Arch Virol. 2026 Jul 20;171(8):231. doi: 10.1007/s00705-026-06689-z.

PMID: 42474804

Preliminary identification and coat protein gene phylogenetic relationships of begomoviruses associated with native flora and cultivated plants from the Yucatan Peninsula of Mexico.

Hernández-Zepeda C, et al. Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8.

PMID: 17682933