Tomato leaf curl Vietnam virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000842785.1 |
| Isolate |
Viet Nam: Co Nhue-Tu Liem-Hanol |
| Release date |
2015/2/12 |
| Submitter |
Tsai,W.S., Hong,L.T.A., Green,S.K. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTCATGTGGTCCCCCCCACTATTATTTGTCGGCCAATACAGACGCTCCCTCAGAGCTTATTTATGTAACGGTTCCCTATAAAACTTGGTCCCCAAGTACGCATTCCAAACATGTGGGATCCGCTTTTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCCGATACATTAGGGTACGATTTAATACGTGATTTAATTTTAGTCATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGGAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACCAATACTGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACGGTGAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTAAAAATCAGGATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTAAATTTTATTACATGAGAACTGTTTACAAATGTTGTTTGCGTTAATGCGTCCCATAATACATAATTTACTGCTCTAATTACATTATTCAAACTAATTACACCCAAATTATTGAGAAATTTCAAAACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAAGGTGTGAGTTCGTCCATATCCGGAAGTCCAGAAAACATTGGTGCATCCCCAGTGCTTTCCTCGGGTTGTAGTTGAATTGGATCCTGACCGTCACTATGTCGTTGTCCGATAGGAAGGGCCTGTTTTGTAGTTCCGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAAGTAAAAACGCCATTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGCGCAGTTAAGTGCGCTGAAATAAGAACAACCACAGGGAAGGTCAATCCTCCGTCTCCTGGTTATTTTCTTCTTCGCTATCCTGTGCTGGACTTTGATAGGTACTTGAGTACAGTGGCTCGGTGATGCTGACGAAGACTGCATTCTTTATTGCCCACGACTTTAATGCAGTATTCTTTTCTTCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCTGCTATCACCCTCTATGACTATACTTATTGGTCGTAATGGCCGCGCAGCGGAACTGACGACGTTCTCTGCAGCCCACTCTTCGAGTTCCTCTGGGACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACGTAAACCTCCATTGGAGGAGTAAAAATTCTATCTAAATTACTATTTAAATTATGGAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGATGCTTTGGACCCCGAATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATATAGGCTTTGACATCTGTTGAGCTTTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTTTGGTTTTTACATTGGAATTTCCCTTCGAATTGGATGAGAACATGCAGGTGAGGAGTTCCATCTTCGTGGAATTCTCTGCAGATGCGGATAAATAGTTTATTTACTGGGGTTTCTAGGTTTTTAAGTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATTGACTGGTCAATCGGTGTCTCTTAAACTTGGCTATGCAATTGGTGTCTGGTGTCTTATTTATATGTGGACACCAAATGGCATTATCGTAATTCCCAAAAGAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_690097.1
|
|
Location
|
131-481 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCGCTTTTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCCGATACATTAGGGTACGATTTAATACGTGATTTAATTTTAGTCATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRIQGSSPAELRQPVYQPCCCPHCPRHKQKEVMGESAHVPQAQDVQNVQKP |
|
NCBI Accession
|
NP_690098.1
|
|
Location
|
291-1064 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGGAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACCAATACTGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACGGTGAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTAAAAATCAGGATCTATTTCTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYTNRAVAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
NP_690099.1
|
|
Location
|
1061-1465 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTGTATTTCAAGATAACGGAACTACAAAACAGGCCCTTCCTATCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCCGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTTTTGAAATTTCTCAATAATTTGGGTGTAATTAGTTTGAATAATGTAATTAGAGCAGTAAATTATGTATTATGGGACGCATTAACGCAAACAACATTTGTAAACAGTTCTCATGTAATAAAATTTAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGELITATQAENGVFTWEITNPLYFKITELQNRPFLSDNDIVTVRIQFNYNPRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLNNLGVISLNNVIRAVNYVLWDALTQTTFVNSSHVIKFNLY |
|
NCBI Accession
|
NP_690100.1
|
|
Location
|
1206-1613 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCGAAGAAGAAAATAACCAGGAGACGGAGGATTGACCTTCCCTGTGGTTGTTCTTATTTCAGCGCACTTAACTGCGCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTGTATTTCAAGATAACGGAACTACAAAACAGGCCCTTCCTATCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCCGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQSSSASPSHCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSALNCANHGFTHRGTHHCNSGREWRFYLGDNKSPVFQDNGTTKQALPIGQRHSDGQDPIQLQPEESTGDAPMFSGLPDMDELTPSDWSFLKSI |
|
NCBI Accession
|
NP_690101.1
|
|
Location
|
1513-2601 |
|
Gene Name
|
C1 |
|
Protein Name
|
Rep protein |
|
Coding Region
|
ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAACTTAAAAACCTAGAAACCCCAGTAAATAAACTATTTATCCGCATCTGCAGAGAATTCCACGAAGATGGAACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGGAAATTCCAATGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAAGCCTATATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAGCATCGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTCCATAATTTAAATAGTAATTTAGATAGAATTTTTACTCCTCCAATGGAGGTTTACGTTTCGCCTTTTTCTTCTTCTTCGTTTGATCGAGTCCCAGAGGAACTCGAAGAGTGGGCTGCAGAGAACGTCGTCAGTTCCGCTGCGCGGCCATTACGACCAATAAGTATAGTCATAGAGGGTGATAGCAGGACGGGGAAGACGATGTGGGCTCGATCATTGGGTCCACACAATTATCTGTGTGGTCATCTTGATTTGAGCCCAAAGGTGTACAGTAATGATGCTTGGTTCAACGTCATCGATGACGTTGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAACCAGTTCAAATTAAAGGTGGCATTCCAGCTATCTTCCTGTGCAATCCAGGGCCCAACTCAAGCTATAAAGAATACCTAGACGAAGAAAAGAATACTGCATTAAAGTCGTGGGCAATAAAGAATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCGAAGAAGAAAATAACCAGGAGACGGAGGATTGA |
|
Protein Sequence
|
MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLKNLETPVNKLFIRICREFHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKAYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPLYSSTYQSPAQDSEEENNQETED |
|
NCBI Accession
|
NP_690102.1
|
|
Location
|
2151-2444 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGAACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGGAAATTCCAATGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAAGCCTATATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAGCATCGGCCCTCAATATATTAA |
|
Protein Sequence
|
MELLTCMFSSNSKGNSNVKTKDSSISHPQAGQHISIRTFRQLKAQQMSKPIWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIRGPKHRPSIY |