Tomato leaf curl Vietnam virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842785.1
Isolate Viet Nam: Co Nhue-Tu Liem-Hanol
Release date 2015/2/12
Submitter Tsai,W.S., Hong,L.T.A., Green,S.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004153
ACCGGATGGCCGCGATTTTTTTCATGTGGTCCCCCCCACTATTATTTGTCGGCCAATACAGACGCTCCCTCAGAGCTTATTTATGTAACGGTTCCCTATAAAACTTGGTCCCCAAGTACGCATTCCAAACATGTGGGATCCGCTTTTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCCGATACATTAGGGTACGATTTAATACGTGATTTAATTTTAGTCATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGGAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACCAATACTGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACGGTGAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTAAAAATCAGGATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTAAATTTTATTACATGAGAACTGTTTACAAATGTTGTTTGCGTTAATGCGTCCCATAATACATAATTTACTGCTCTAATTACATTATTCAAACTAATTACACCCAAATTATTGAGAAATTTCAAAACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAAGGTGTGAGTTCGTCCATATCCGGAAGTCCAGAAAACATTGGTGCATCCCCAGTGCTTTCCTCGGGTTGTAGTTGAATTGGATCCTGACCGTCACTATGTCGTTGTCCGATAGGAAGGGCCTGTTTTGTAGTTCCGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAAGTAAAAACGCCATTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGCGCAGTTAAGTGCGCTGAAATAAGAACAACCACAGGGAAGGTCAATCCTCCGTCTCCTGGTTATTTTCTTCTTCGCTATCCTGTGCTGGACTTTGATAGGTACTTGAGTACAGTGGCTCGGTGATGCTGACGAAGACTGCATTCTTTATTGCCCACGACTTTAATGCAGTATTCTTTTCTTCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCGATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGGCTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCTGCTATCACCCTCTATGACTATACTTATTGGTCGTAATGGCCGCGCAGCGGAACTGACGACGTTCTCTGCAGCCCACTCTTCGAGTTCCTCTGGGACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACGTAAACCTCCATTGGAGGAGTAAAAATTCTATCTAAATTACTATTTAAATTATGGAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGATGCTTTGGACCCCGAATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATATAGGCTTTGACATCTGTTGAGCTTTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTTTGGTTTTTACATTGGAATTTCCCTTCGAATTGGATGAGAACATGCAGGTGAGGAGTTCCATCTTCGTGGAATTCTCTGCAGATGCGGATAAATAGTTTATTTACTGGGGTTTCTAGGTTTTTAAGTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATTGACTGGTCAATCGGTGTCTCTTAAACTTGGCTATGCAATTGGTGTCTGGTGTCTTATTTATATGTGGACACCAAATGGCATTATCGTAATTCCCAAAAGAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_690097.1
Location 131-481
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCGCTTTTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCCGATACATTAGGGTACGATTTAATACGTGATTTAATTTTAGTCATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRIQGSSPAELRQPVYQPCCCPHCPRHKQKEVMGESAHVPQAQDVQNVQKP

NCBI Accession NP_690098.1
Location 291-1064
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGGAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACCAATACTGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACGGTGAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTAAAAATCAGGATCTATTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYTNRAVAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_690099.1
Location 1061-1465
Gene Name C3
Protein Name C3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTGTATTTCAAGATAACGGAACTACAAAACAGGCCCTTCCTATCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCCGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTTTTGAAATTTCTCAATAATTTGGGTGTAATTAGTTTGAATAATGTAATTAGAGCAGTAAATTATGTATTATGGGACGCATTAACGCAAACAACATTTGTAAACAGTTCTCATGTAATAAAATTTAATCTTTATTAA
Protein Sequence MDSRTGELITATQAENGVFTWEITNPLYFKITELQNRPFLSDNDIVTVRIQFNYNPRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLNNLGVISLNNVIRAVNYVLWDALTQTTFVNSSHVIKFNLY

NCBI Accession NP_690100.1
Location 1206-1613
Gene Name C2
Protein Name C2
Coding Region ATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCGAAGAAGAAAATAACCAGGAGACGGAGGATTGACCTTCCCTGTGGTTGTTCTTATTTCAGCGCACTTAACTGCGCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTGTATTTCAAGATAACGGAACTACAAAACAGGCCCTTCCTATCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCCGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MQSSSASPSHCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSALNCANHGFTHRGTHHCNSGREWRFYLGDNKSPVFQDNGTTKQALPIGQRHSDGQDPIQLQPEESTGDAPMFSGLPDMDELTPSDWSFLKSI

NCBI Accession NP_690101.1
Location 1513-2601
Gene Name C1
Protein Name Rep protein
Coding Region ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAACTTAAAAACCTAGAAACCCCAGTAAATAAACTATTTATCCGCATCTGCAGAGAATTCCACGAAGATGGAACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGGAAATTCCAATGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAAGCCTATATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAGCATCGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTCCATAATTTAAATAGTAATTTAGATAGAATTTTTACTCCTCCAATGGAGGTTTACGTTTCGCCTTTTTCTTCTTCTTCGTTTGATCGAGTCCCAGAGGAACTCGAAGAGTGGGCTGCAGAGAACGTCGTCAGTTCCGCTGCGCGGCCATTACGACCAATAAGTATAGTCATAGAGGGTGATAGCAGGACGGGGAAGACGATGTGGGCTCGATCATTGGGTCCACACAATTATCTGTGTGGTCATCTTGATTTGAGCCCAAAGGTGTACAGTAATGATGCTTGGTTCAACGTCATCGATGACGTTGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAACCAGTTCAAATTAAAGGTGGCATTCCAGCTATCTTCCTGTGCAATCCAGGGCCCAACTCAAGCTATAAAGAATACCTAGACGAAGAAAAGAATACTGCATTAAAGTCGTGGGCAATAAAGAATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCGAAGAAGAAAATAACCAGGAGACGGAGGATTGA
Protein Sequence MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLKNLETPVNKLFIRICREFHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKAYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPLYSSTYQSPAQDSEEENNQETED

NCBI Accession NP_690102.1
Location 2151-2444
Gene Name C4
Protein Name C4
Coding Region ATGGAACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGGAAATTCCAATGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAAGCCTATATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAGCATCGGCCCTCAATATATTAA
Protein Sequence MELLTCMFSSNSKGNSNVKTKDSSISHPQAGQHISIRTFRQLKAQQMSKPIWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIRGPKHRPSIY

References More References in PubMed

1

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703

2

Tobacco leaf curl Puer virus: a novel monopartite begomovirus infecting Nicotiana tabacum in China.

Jiang N, et al.  Arch Virol. 2022 Jan;167(1):229-232. doi: 10.1007/s00705-021-05267-9. Epub 2021 Oct 15.

PMID: 34652555

3

First Report of Tomato yellow leaf curl Kanchanaburi virus Infecting Eggplant in Laos.

Tang YF, et al.  Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0696-PDN.

PMID: 30708424

4

Transreplication of a Tomato yellow leaf curl Thailand virus DNA-B and replication of a DNAbeta component by Tomato leaf curl Vietnam virus and Tomato yellow leaf curl Vietnam virus.

Blawid R, et al.  Virus Res. 2008 Sep;136(1-2):107-17. doi: 10.1016/j.virusres.2008.04.025. Epub 2008 Jun 11.

PMID: 18550192

5

Molecular characterization of tomato leaf curl China virus, infecting tomato plants in China, and functional analyses of its associated betasatellite.

Yang X, et al.  Appl Environ Microbiol. 2011 May;77(9):3092-101. doi: 10.1128/AEM.00017-11. Epub 2011 Mar 4.

PMID: 21378048

6

Emergence of Asian endemic begomoviruses as a pandemic threat.

Qureshi MA, et al.  Front Plant Sci. 2022 Sep 28;13:970941. doi: 10.3389/fpls.2022.970941. eCollection 2022.

PMID: 36247535

7

Emergence and diversity of begomoviruses infecting solanaceous crops in East and Southeast Asia.

Kenyon L, et al.  Virus Res. 2014 Jun 24;186:104-13. doi: 10.1016/j.virusres.2013.12.026. Epub 2014 Jan 15.

PMID: 24440320

8

Molecular Characterization of Begomoviruses Associated with Leafcurl Diseases of Tomato in Bangladesh, Laos, Malaysia, Myanmar, and Vietnam.

Green SK, et al.  Plant Dis. 2001 Dec;85(12):1286. doi: 10.1094/PDIS.2001.85.12.1286A.

PMID: 30831796

9

A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina.

Mollel HG, et al.  Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29.

PMID: 27900540

10

Isolation and molecular characterization of a distinct begomovirus and its associated betasatellite infecting Hedyotis uncinella (Hook. et Arn.) in Vietnam.

Du Z, et al.  Virus Genes. 2014 Jun;48(3):557-61. doi: 10.1007/s11262-014-1043-2. Epub 2014 Feb 8.

PMID: 24510306