Tomato leaf curl Vietnam virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000842785.1 |
| Isolate | Viet Nam: Co Nhue-Tu Liem-Hanol |
| Release date | 2015/2/12 |
| Submitter | Tsai,W.S., Hong,L.T.A., Green,S.K. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_004153
Gene Information
| NCBI Accession | NP_690097.1 |
|---|---|
| Location | 131-481 |
| Gene Name | V2 |
| Protein Name | pre-coat protein |
| Coding Region | ATGTGGGATCCGCTTTTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCGATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCCGATACATTAGGGTACGATTTAATACGTGATTTAATTTTAGTCATTCGTGCCAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGA |
| Protein Sequence | MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRIQGSSPAELRQPVYQPCCCPHCPRHKQKEVMGESAHVPQAQDVQNVQKP |
| NCBI Accession | NP_690098.1 |
|---|---|
| Location | 291-1064 |
| Gene Name | V1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCGTATACCAACCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGCAAGCCCAAGATGTACAGAATGTACAAAAGCCCTGATGTTCCACGAGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTAGCCCATGTAGGGAAGGTAATTTGTGTGTCTGATGTTACACGTGGTAACGGGTTGACTCATCGTGTTGGGAAGAGGTTCTGTATTAAGTCAGTTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATTAAGACGAAGAATCATACCAATACTGTCATGTTCTTTTTAGTACGTGATAGAAGACCTTTTGGAACTCCCCAAGATTTTGGTCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCCACGGTGAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAACAACCATGTGACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCACACAGAGAATGCTCTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTAAAAATCAGGATCTATTTCTATGATTCTGTTCAGAATTAA |
| Protein Sequence | MSKRPADIVISTPASKVRRRLNFDSPYTNRAVAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| NCBI Accession | NP_690099.1 |
|---|---|
| Location | 1061-1465 |
| Gene Name | C3 |
| Protein Name | C3 |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTGTATTTCAAGATAACGGAACTACAAAACAGGCCCTTCCTATCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCCGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTTTTGAAATTTCTCAATAATTTGGGTGTAATTAGTTTGAATAATGTAATTAGAGCAGTAAATTATGTATTATGGGACGCATTAACGCAAACAACATTTGTAAACAGTTCTCATGTAATAAAATTTAATCTTTATTAA |
| Protein Sequence | MDSRTGELITATQAENGVFTWEITNPLYFKITELQNRPFLSDNDIVTVRIQFNYNPRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLNNLGVISLNNVIRAVNYVLWDALTQTTFVNSSHVIKFNLY |
| NCBI Accession | NP_690100.1 |
|---|---|
| Location | 1206-1613 |
| Gene Name | C2 |
| Protein Name | C2 |
| Coding Region | ATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCGAAGAAGAAAATAACCAGGAGACGGAGGATTGACCTTCCCTGTGGTTGTTCTTATTTCAGCGCACTTAACTGCGCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTGTATTTCAAGATAACGGAACTACAAAACAGGCCCTTCCTATCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCCGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
| Protein Sequence | MQSSSASPSHCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSALNCANHGFTHRGTHHCNSGREWRFYLGDNKSPVFQDNGTTKQALPIGQRHSDGQDPIQLQPEESTGDAPMFSGLPDMDELTPSDWSFLKSI |
| NCBI Accession | NP_690101.1 |
|---|---|
| Location | 1513-2601 |
| Gene Name | C1 |
| Protein Name | Rep protein |
| Coding Region | ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAACTTAAAAACCTAGAAACCCCAGTAAATAAACTATTTATCCGCATCTGCAGAGAATTCCACGAAGATGGAACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGGAAATTCCAATGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAAGCCTATATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAGCATCGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTCCATAATTTAAATAGTAATTTAGATAGAATTTTTACTCCTCCAATGGAGGTTTACGTTTCGCCTTTTTCTTCTTCTTCGTTTGATCGAGTCCCAGAGGAACTCGAAGAGTGGGCTGCAGAGAACGTCGTCAGTTCCGCTGCGCGGCCATTACGACCAATAAGTATAGTCATAGAGGGTGATAGCAGGACGGGGAAGACGATGTGGGCTCGATCATTGGGTCCACACAATTATCTGTGTGGTCATCTTGATTTGAGCCCAAAGGTGTACAGTAATGATGCTTGGTTCAACGTCATCGATGACGTTGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAACCAGTTCAAATTAAAGGTGGCATTCCAGCTATCTTCCTGTGCAATCCAGGGCCCAACTCAAGCTATAAAGAATACCTAGACGAAGAAAAGAATACTGCATTAAAGTCGTGGGCAATAAAGAATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCGAAGAAGAAAATAACCAGGAGACGGAGGATTGA |
| Protein Sequence | MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLKNLETPVNKLFIRICREFHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKAYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPLYSSTYQSPAQDSEEENNQETED |
| NCBI Accession | NP_690102.1 |
|---|---|
| Location | 2151-2444 |
| Gene Name | C4 |
| Protein Name | C4 |
| Coding Region | ATGGAACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGGAAATTCCAATGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAAGCCTATATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAGCATCGGCCCTCAATATATTAA |
| Protein Sequence | MELLTCMFSSNSKGNSNVKTKDSSISHPQAGQHISIRTFRQLKAQQMSKPIWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIRGPKHRPSIY |
References More References in PubMed
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