Tomato leaf curl Uganda virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824385.1
Isolate Uganda: Iganga
Release date 2018/8/25
Submitter Shih,S.L., Green,S.K., Tsai,W.S., Ssekyewa,C.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038473
ACCGGATGGCCGCGCCTCCGAAAAAGAAAAAGTGGACCCCCCCATGATTTATTGTCAGCCAATCAGAATAGCGCGTGAAAGCTTAGATATTTTGGTTTTTGTCTTTATATACTTCTCCACTAAGTTGTTTTTTATTCATAATGTGGGATCCACTGTTAAATGAGTTTCCAGACTCAGTTCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTATTGAGTCCACTTACGAGCCCAATACGTTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCCGAGATTATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCACGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCATACGAGCAGAGAGATGATGTTAAGCATACTGGTGTTGTCCGTTGTGTTAGTGATGTTACTCGTGGATCGGGTATTACACATAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCATTTACATTATAGGGAAGATATGGATGGATGAGAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGTACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACCGTCAAGAATGATTTGAGAGACAGATACCAAGTTTTGCGGAAATTTCATGCAACTGTTGTAGGTGGACCCTCCGGGATGAAGGAGCACGCGTTAGTTAAGAGATTTTTTAAGGTTAATAATCATGTAGTTTATAATCATCAGGAAGCAGCTAAGTACGAAAACCATACGGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGTTGAAAATACGTATTTATTTCTATGATTCAGTCGGTAATTAATAAAGATTAAATTTTATTTCATGATCCTCCGTAACTTGGAGTGTGTTTACAAGTACATCGTACAATACATGATCAACTGCTCTAATAACTGTATTAATTGAAATTACACCAAGGTTATCTAAATATTTAAGAACTTGATATCTAAATACTCTTAAGAAACGACCAGTCTGAGGCCGTAATGTCGTCCAGACTCTGAAGTTGAGAAAACACTTGTGAATCCCCAATTCCTTCCTCAGGTTGTGGTTGAACCGTATCTGGATCGATATGATGTCGTGGTTGGTGTTGAATGGTCTGATGTTGTGGTCGATGATCTTGAAATAAAGGGGATTTTGTATCTCCCAGATATTTACGCCACTCATCGCTTGATGAGCAGTGATGTATTCCCCGGTGCGTGAATCCATGGTTGTTGCAGTCGATGTGTAGGAAATATGAGCAGCCGCAGTTTAGGTCTATTCGTCTACGTCTGATTACCTTCTTCTTGGCTACTCGGTGTTGGACCTTGATGGGTACCTGTGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTGATTGCCCAGGCTTTCAGTGGTGCATTTTTTTCCTCGTCTAGATATTCTCTATATGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTTAGATCAAGATGACCACACAAATAATTGTGTGGTCCTAATGACCTGGCCCACATTGTCTTGCCTGTTCGACTATCACCCTCGATAACAATACTAATCGGTCTCCATGGCCGCGCAGCGGAAGTCATTACATTCTCAGACACCCAACATTCAAGTTCTTCTGGAACTTGGTTAAAAGAAGAGGAAAGAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAATTGCTATTCAAATTATGAAATTGTAAAACAAAATCTTTTGGGGCTAATTCTCTAAGGACTCTAAGAGCCTCCGACTTACTTCCTGAGTTAAGTGCCTTTGCGTAAGCGTCGTTGGCTGACTGTTGCCCACCCCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTATCCAGATAGGAATTGACATCTGAACTGGACTTAGCACCTTGTATGTTGGGGTGGAAACTGGTGCTACAGCTTGGGTGTGAACAATCGAAGAGGCGATTGTTCGTAACCGTGATTTTACCCTCGAATTGGATGAGGGCATGCAGATGAGGTTCCCCATTCTGATGGAGTTCTTTACAGATTTTGATATATTTAGGATTTGATGCAAGGGTAAGGTTTTGAATGAAAGAGAGAAGGTATTCTTTTGGTAAGGAACACTTGGGATATGTGAGGAAAATGTTTTTAGCTTGTATTTTAAATCGTGGATTTCTCATATTGACTTGGTCAATTGGAGACACTCTGATTCATGTCTCTGGTGAATTGGAGACAATATATAGTGTCTCTAAATGGCATTATTGTAATTATTATAAATAAAATTTGAAATTCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506546.1
Location 141-491
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTGTTAAATGAGTTTCCAGACTCAGTTCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTATTGAGTCCACTTACGAGCCCAATACGTTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCCGAGATTATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQAIESTYEPNTLGHDLIRDLICVVRARDYVEATRRYNNFNARLEGSSKAELRQPVHQPCCCPHCPRHKQTSIMDLQAHVSKAQDVQNVQKP

NCBI Accession YP_009506547.1
Location 301-1077
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCACGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCATACGAGCAGAGAGATGATGTTAAGCATACTGGTGTTGTCCGTTGTGTTAGTGATGTTACTCGTGGATCGGGTATTACACATAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCATTTACATTATAGGGAAGATATGGATGGATGAGAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGTACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACCGTCAAGAATGATTTGAGAGACAGATACCAAGTTTTGCGGAAATTTCATGCAACTGTTGTAGGTGGACCCTCCGGGATGAAGGAGCACGCGTTAGTTAAGAGATTTTTTAAGGTTAATAATCATGTAGTTTATAATCATCAGGAAGCAGCTAAGTACGAAAACCATACGGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGTTGAAAATACGTATTTATTTCTATGATTCAGTCGGTAATTAA
Protein Sequence MSKRPGDIIISTPASKVRRRLNFDSPYTSRAAVPTAPGTSRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCVKSIYIIGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEHALVKRFFKVNNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN

NCBI Accession YP_009506548.1
Location 529-855
Gene Name C5
Protein Name C5 protein
Coding Region ATGAAATTTCCGCAAAACTTGGTATCTGTCTCTCAAATCATTCTTGACGGTAGCTGTACTGGGCTCGTTATCAAACATGTTAAACACCTGCCCAAAGTCCATTGGGCTTGTACCATAGGGCCTTCTATCACGGACCAAAAAAAACATGACCTGATTAGTGTGATTCTGCTTCTTGATATTCTCATCCATCCATATCTTCCCTATAATGTAAATGGACTTCACACAGAACCTCTTGCCAACCCTATGTGTAATACCCGATCCACGAGTAACATCACTAACACAACGGACAACACCAGTATGCTTAACATCATCTCTCTGCTCGTATGA
Protein Sequence MKFPQNLVSVSQIILDGSCTGLVIKHVKHLPKVHWACTIGPSITDQKKHDLISVILLLDILIHPYLPYNVNGLHTEPLANPMCNTRSTSNITNTTDNTSMLNIISLLV

NCBI Accession YP_009506549.1
Location 1074-1478
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTCACGCACCGGGGAATACATCACTGCTCATCAAGCGATGAGTGGCGTAAATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATCATCGACCACAACATCAGACCATTCAACACCAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTGAGGAAGGAATTGGGGATTCACAAGTGTTTTCTCAACTTCAGAGTCTGGACGACATTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGATATCAAGTTCTTAAATATTTAGATAACCTTGGTGTAATTTCAATTAATACAGTTATTAGAGCAGTTGATCATGTATTGTACGATGTACTTGTAAACACACTCCAAGTTACGGAGGATCATGAAATAAAATTTAATCTTTATTAA
Protein Sequence MDSRTGEYITAHQAMSGVNIWEIQNPLYFKIIDHNIRPFNTNHDIISIQIRFNHNLRKELGIHKCFLNFRVWTTLRPQTGRFLRVFRYQVLKYLDNLGVISINTVIRAVDHVLYDVLVNTLQVTEDHEIKFNLY

NCBI Accession YP_009506550.1
Location 1219-1626
Gene Name C2
Protein Name transcriptional activation protein
Coding Region ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAGGTACCCATCAAGGTCCAACACCGAGTAGCCAAGAAGAAGGTAATCAGACGTAGACGAATAGACCTAAACTGCGGCTGCTCATATTTCCTACACATCGACTGCAACAACCATGGATTCACGCACCGGGGAATACATCACTGCTCATCAAGCGATGAGTGGCGTAAATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATCATCGACCACAACATCAGACCATTCAACACCAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTGAGGAAGGAATTGGGGATTCACAAGTGTTTTCTCAACTTCAGAGTCTGGACGACATTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MRPSSPSTSHCSQVPIKVQHRVAKKKVIRRRRIDLNCGCSYFLHIDCNNHGFTHRGIHHCSSSDEWRKYLGDTKSPLFQDHRPQHQTIQHQPRHHIDPDTVQPQPEEGIGDSQVFSQLQSLDDITASDWSFLKSI

NCBI Accession YP_009506551.1
Location 1535-2611
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGAGAAATCCACGATTTAAAATACAAGCTAAAAACATTTTCCTCACATATCCCAAGTGTTCCTTACCAAAAGAATACCTTCTCTCTTTCATTCAAAACCTTACCCTTGCATCAAATCCTAAATATATCAAAATCTGTAAAGAACTCCATCAGAATGGGGAACCTCATCTGCATGCCCTCATCCAATTCGAGGGTAAAATCACGGTTACGAACAATCGCCTCTTCGATTGTTCACACCCAAGCTGTAGCACCAGTTTCCACCCCAACATACAAGGTGCTAAGTCCAGTTCAGATGTCAATTCCTATCTGGATAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGTGGGCAACAGTCAGCCAACGACGCTTACGCAAAGGCACTTAACTCAGGAAGTAAGTCGGAGGCTCTTAGAGTCCTTAGAGAATTAGCCCCAAAAGATTTTGTTTTACAATTTCATAATTTGAATAGCAATTTAGATAGGATTTTTCAGGAGCCTCCAGCTCCTTATGTTTCTCCTTTTCTTTCCTCTTCTTTTAACCAAGTTCCAGAAGAACTTGAATGTTGGGTGTCTGAGAATGTAATGACTTCCGCTGCGCGGCCATGGAGACCGATTAGTATTGTTATCGAGGGTGATAGTCGAACAGGCAAGACAATGTGGGCCAGGTCATTAGGACCACACAATTATTTGTGTGGTCATCTTGATCTAAGCCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTTGATCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCCTCATATAGAGAATATCTAGACGAGGAAAAAAATGCACCACTGAAAGCCTGGGCAATCAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAGGTACCCATCAAGGTCCAACACCGAGTAGCCAAGAAGAAGGTAATCAGACGTAG
Protein Sequence MRNPRFKIQAKNIFLTYPKCSLPKEYLLSFIQNLTLASNPKYIKICKELHQNGEPHLHALIQFEGKITVTNNRLFDCSHPSCSTSFHPNIQGAKSSSDVNSYLDKDGDTIEWGEFQIDGRSARGGQQSANDAYAKALNSGSKSEALRVLRELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELECWVSENVMTSAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNAPLKAWAIKNATFVTLHEPLFTGTHQGPTPSSQEEGNQT

NCBI Accession YP_009506552.1
Location 2155-2457
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCATGCCCTCATCCAATTCGAGGGTAAAATCACGGTTACGAACAATCGCCTCTTCGATTGTTCACACCCAAGCTGTAGCACCAGTTTCCACCCCAACATACAAGGTGCTAAGTCCAGTTCAGATGTCAATTCCTATCTGGATAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGTGGGCAACAGTCAGCCAACGACGCTTACGCAAAGGCACTTAACTCAGGAAGTAAGTCGGAGGCTCTTAGAGTCCTTAGAGAATTAG
Protein Sequence MGNLICMPSSNSRVKSRLRTIASSIVHTQAVAPVSTPTYKVLSPVQMSIPIWIRTETPSNGESFRSMDDLQGVGNSQPTTLTQRHLTQEVSRRLLESLEN

References More References in PubMed

1

Molecular Characterization of a Begomovirus Associated with Tomato Leaf Curl Disease in Uganda.

Shih SL, et al.  Plant Dis. 2006 Feb;90(2):246. doi: 10.1094/PD-90-0246A.

PMID: 30786424

2

Relationship between Tomato yellow leaf curl viruses and the whitefly vector.

Ssekyewa C, et al.  Commun Agric Appl Biol Sci. 2007;72(4):1029-48.

PMID: 18396846

3

A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina.

Mollel HG, et al.  Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29.

PMID: 27900540

4

Comprehensive Surveys of Bean common mosaic virus and Bean common mosaic necrosis virus and Molecular Evidence for Occurrence of Other Phaseolus vulgaris Viruses in Tanzania.

Mwaipopo B, et al.  Plant Dis. 2018 Nov;102(11):2361-2370. doi: 10.1094/PDIS-01-18-0198-RE. Epub 2018 Sep 19.

PMID: 30252625

5

Deinbollia mosaic virus: a novel begomovirus infecting the sapindaceous weed Deinbollia borbonica in Kenya and Tanzania.

Kyallo M, et al.  Arch Virol. 2017 May;162(5):1393-1396. doi: 10.1007/s00705-016-3217-9. Epub 2017 Jan 9.

PMID: 28070648