Tomato leaf curl Uganda virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002824385.1 |
| Isolate |
Uganda: Iganga |
| Release date |
2018/8/25 |
| Submitter |
Shih,S.L., Green,S.K., Tsai,W.S., Ssekyewa,C. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCTCCGAAAAAGAAAAAGTGGACCCCCCCATGATTTATTGTCAGCCAATCAGAATAGCGCGTGAAAGCTTAGATATTTTGGTTTTTGTCTTTATATACTTCTCCACTAAGTTGTTTTTTATTCATAATGTGGGATCCACTGTTAAATGAGTTTCCAGACTCAGTTCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTATTGAGTCCACTTACGAGCCCAATACGTTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCCGAGATTATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCACGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCATACGAGCAGAGAGATGATGTTAAGCATACTGGTGTTGTCCGTTGTGTTAGTGATGTTACTCGTGGATCGGGTATTACACATAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCATTTACATTATAGGGAAGATATGGATGGATGAGAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGTACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACCGTCAAGAATGATTTGAGAGACAGATACCAAGTTTTGCGGAAATTTCATGCAACTGTTGTAGGTGGACCCTCCGGGATGAAGGAGCACGCGTTAGTTAAGAGATTTTTTAAGGTTAATAATCATGTAGTTTATAATCATCAGGAAGCAGCTAAGTACGAAAACCATACGGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGTTGAAAATACGTATTTATTTCTATGATTCAGTCGGTAATTAATAAAGATTAAATTTTATTTCATGATCCTCCGTAACTTGGAGTGTGTTTACAAGTACATCGTACAATACATGATCAACTGCTCTAATAACTGTATTAATTGAAATTACACCAAGGTTATCTAAATATTTAAGAACTTGATATCTAAATACTCTTAAGAAACGACCAGTCTGAGGCCGTAATGTCGTCCAGACTCTGAAGTTGAGAAAACACTTGTGAATCCCCAATTCCTTCCTCAGGTTGTGGTTGAACCGTATCTGGATCGATATGATGTCGTGGTTGGTGTTGAATGGTCTGATGTTGTGGTCGATGATCTTGAAATAAAGGGGATTTTGTATCTCCCAGATATTTACGCCACTCATCGCTTGATGAGCAGTGATGTATTCCCCGGTGCGTGAATCCATGGTTGTTGCAGTCGATGTGTAGGAAATATGAGCAGCCGCAGTTTAGGTCTATTCGTCTACGTCTGATTACCTTCTTCTTGGCTACTCGGTGTTGGACCTTGATGGGTACCTGTGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTGATTGCCCAGGCTTTCAGTGGTGCATTTTTTTCCTCGTCTAGATATTCTCTATATGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTTAGATCAAGATGACCACACAAATAATTGTGTGGTCCTAATGACCTGGCCCACATTGTCTTGCCTGTTCGACTATCACCCTCGATAACAATACTAATCGGTCTCCATGGCCGCGCAGCGGAAGTCATTACATTCTCAGACACCCAACATTCAAGTTCTTCTGGAACTTGGTTAAAAGAAGAGGAAAGAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAATTGCTATTCAAATTATGAAATTGTAAAACAAAATCTTTTGGGGCTAATTCTCTAAGGACTCTAAGAGCCTCCGACTTACTTCCTGAGTTAAGTGCCTTTGCGTAAGCGTCGTTGGCTGACTGTTGCCCACCCCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTATCCAGATAGGAATTGACATCTGAACTGGACTTAGCACCTTGTATGTTGGGGTGGAAACTGGTGCTACAGCTTGGGTGTGAACAATCGAAGAGGCGATTGTTCGTAACCGTGATTTTACCCTCGAATTGGATGAGGGCATGCAGATGAGGTTCCCCATTCTGATGGAGTTCTTTACAGATTTTGATATATTTAGGATTTGATGCAAGGGTAAGGTTTTGAATGAAAGAGAGAAGGTATTCTTTTGGTAAGGAACACTTGGGATATGTGAGGAAAATGTTTTTAGCTTGTATTTTAAATCGTGGATTTCTCATATTGACTTGGTCAATTGGAGACACTCTGATTCATGTCTCTGGTGAATTGGAGACAATATATAGTGTCTCTAAATGGCATTATTGTAATTATTATAAATAAAATTTGAAATTCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009506546.1
|
|
Location
|
141-491 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCACTGTTAAATGAGTTTCCAGACTCAGTTCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTATTGAGTCCACTTACGAGCCCAATACGTTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCCGAGATTATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAIKYLQAIESTYEPNTLGHDLIRDLICVVRARDYVEATRRYNNFNARLEGSSKAELRQPVHQPCCCPHCPRHKQTSIMDLQAHVSKAQDVQNVQKP |
|
NCBI Accession
|
YP_009506547.1
|
|
Location
|
301-1077 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCACGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCATACGAGCAGAGAGATGATGTTAAGCATACTGGTGTTGTCCGTTGTGTTAGTGATGTTACTCGTGGATCGGGTATTACACATAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCATTTACATTATAGGGAAGATATGGATGGATGAGAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGTACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACCGTCAAGAATGATTTGAGAGACAGATACCAAGTTTTGCGGAAATTTCATGCAACTGTTGTAGGTGGACCCTCCGGGATGAAGGAGCACGCGTTAGTTAAGAGATTTTTTAAGGTTAATAATCATGTAGTTTATAATCATCAGGAAGCAGCTAAGTACGAAAACCATACGGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGTTGAAAATACGTATTTATTTCTATGATTCAGTCGGTAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPASKVRRRLNFDSPYTSRAAVPTAPGTSRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCVKSIYIIGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEHALVKRFFKVNNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN |
|
NCBI Accession
|
YP_009506548.1
|
|
Location
|
529-855 |
|
Gene Name
|
C5 |
|
Protein Name
|
C5 protein |
|
Coding Region
|
ATGAAATTTCCGCAAAACTTGGTATCTGTCTCTCAAATCATTCTTGACGGTAGCTGTACTGGGCTCGTTATCAAACATGTTAAACACCTGCCCAAAGTCCATTGGGCTTGTACCATAGGGCCTTCTATCACGGACCAAAAAAAACATGACCTGATTAGTGTGATTCTGCTTCTTGATATTCTCATCCATCCATATCTTCCCTATAATGTAAATGGACTTCACACAGAACCTCTTGCCAACCCTATGTGTAATACCCGATCCACGAGTAACATCACTAACACAACGGACAACACCAGTATGCTTAACATCATCTCTCTGCTCGTATGA |
|
Protein Sequence
|
MKFPQNLVSVSQIILDGSCTGLVIKHVKHLPKVHWACTIGPSITDQKKHDLISVILLLDILIHPYLPYNVNGLHTEPLANPMCNTRSTSNITNTTDNTSMLNIISLLV |
|
NCBI Accession
|
YP_009506549.1
|
|
Location
|
1074-1478 |
|
Gene Name
|
C3 |
|
Protein Name
|
replication enhancement protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAATACATCACTGCTCATCAAGCGATGAGTGGCGTAAATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATCATCGACCACAACATCAGACCATTCAACACCAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTGAGGAAGGAATTGGGGATTCACAAGTGTTTTCTCAACTTCAGAGTCTGGACGACATTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGATATCAAGTTCTTAAATATTTAGATAACCTTGGTGTAATTTCAATTAATACAGTTATTAGAGCAGTTGATCATGTATTGTACGATGTACTTGTAAACACACTCCAAGTTACGGAGGATCATGAAATAAAATTTAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGEYITAHQAMSGVNIWEIQNPLYFKIIDHNIRPFNTNHDIISIQIRFNHNLRKELGIHKCFLNFRVWTTLRPQTGRFLRVFRYQVLKYLDNLGVISINTVIRAVDHVLYDVLVNTLQVTEDHEIKFNLY |
|
NCBI Accession
|
YP_009506550.1
|
|
Location
|
1219-1626 |
|
Gene Name
|
C2 |
|
Protein Name
|
transcriptional activation protein |
|
Coding Region
|
ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAGGTACCCATCAAGGTCCAACACCGAGTAGCCAAGAAGAAGGTAATCAGACGTAGACGAATAGACCTAAACTGCGGCTGCTCATATTTCCTACACATCGACTGCAACAACCATGGATTCACGCACCGGGGAATACATCACTGCTCATCAAGCGATGAGTGGCGTAAATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATCATCGACCACAACATCAGACCATTCAACACCAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTGAGGAAGGAATTGGGGATTCACAAGTGTTTTCTCAACTTCAGAGTCTGGACGACATTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MRPSSPSTSHCSQVPIKVQHRVAKKKVIRRRRIDLNCGCSYFLHIDCNNHGFTHRGIHHCSSSDEWRKYLGDTKSPLFQDHRPQHQTIQHQPRHHIDPDTVQPQPEEGIGDSQVFSQLQSLDDITASDWSFLKSI |
|
NCBI Accession
|
YP_009506551.1
|
|
Location
|
1535-2611 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGAGAAATCCACGATTTAAAATACAAGCTAAAAACATTTTCCTCACATATCCCAAGTGTTCCTTACCAAAAGAATACCTTCTCTCTTTCATTCAAAACCTTACCCTTGCATCAAATCCTAAATATATCAAAATCTGTAAAGAACTCCATCAGAATGGGGAACCTCATCTGCATGCCCTCATCCAATTCGAGGGTAAAATCACGGTTACGAACAATCGCCTCTTCGATTGTTCACACCCAAGCTGTAGCACCAGTTTCCACCCCAACATACAAGGTGCTAAGTCCAGTTCAGATGTCAATTCCTATCTGGATAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGTGGGCAACAGTCAGCCAACGACGCTTACGCAAAGGCACTTAACTCAGGAAGTAAGTCGGAGGCTCTTAGAGTCCTTAGAGAATTAGCCCCAAAAGATTTTGTTTTACAATTTCATAATTTGAATAGCAATTTAGATAGGATTTTTCAGGAGCCTCCAGCTCCTTATGTTTCTCCTTTTCTTTCCTCTTCTTTTAACCAAGTTCCAGAAGAACTTGAATGTTGGGTGTCTGAGAATGTAATGACTTCCGCTGCGCGGCCATGGAGACCGATTAGTATTGTTATCGAGGGTGATAGTCGAACAGGCAAGACAATGTGGGCCAGGTCATTAGGACCACACAATTATTTGTGTGGTCATCTTGATCTAAGCCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTTGATCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCCTCATATAGAGAATATCTAGACGAGGAAAAAAATGCACCACTGAAAGCCTGGGCAATCAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAGGTACCCATCAAGGTCCAACACCGAGTAGCCAAGAAGAAGGTAATCAGACGTAG |
|
Protein Sequence
|
MRNPRFKIQAKNIFLTYPKCSLPKEYLLSFIQNLTLASNPKYIKICKELHQNGEPHLHALIQFEGKITVTNNRLFDCSHPSCSTSFHPNIQGAKSSSDVNSYLDKDGDTIEWGEFQIDGRSARGGQQSANDAYAKALNSGSKSEALRVLRELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELECWVSENVMTSAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNAPLKAWAIKNATFVTLHEPLFTGTHQGPTPSSQEEGNQT |
|
NCBI Accession
|
YP_009506552.1
|
|
Location
|
2155-2457 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTGCATGCCCTCATCCAATTCGAGGGTAAAATCACGGTTACGAACAATCGCCTCTTCGATTGTTCACACCCAAGCTGTAGCACCAGTTTCCACCCCAACATACAAGGTGCTAAGTCCAGTTCAGATGTCAATTCCTATCTGGATAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGTGGGCAACAGTCAGCCAACGACGCTTACGCAAAGGCACTTAACTCAGGAAGTAAGTCGGAGGCTCTTAGAGTCCTTAGAGAATTAG |
|
Protein Sequence
|
MGNLICMPSSNSRVKSRLRTIASSIVHTQAVAPVSTPTYKVLSPVQMSIPIWIRTETPSNGESFRSMDDLQGVGNSQPTTLTQRHLTQEVSRRLLESLEN |