Genus | Begomovirus |
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Isolate | TZ-Ten-05 |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | ABF61898.1 |
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Location | 137-487 |
Gene Name | V2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCGTTAGTAAATGAGTTTCCAGACTCTGTTCACGGGTTTCGTTGTATGCTTGCAATAAAATATTTACAGGCCGTTGAGTCCACTTACGAGCCCAATACATTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCAGAGATTATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA |
Protein Sequence | MWDPLVNEFPDSVHGFRCMLAIKYLQAVESTYEPNTLGHDLIRDLICVVRARDYVEATRRYNHFNARLEGASKAELRQPVYQPCCCPHRPRHKQTSIMDLQAHVSKAQDVQNVQKP |
NCBI Accession | ABF61895.1 |
---|---|
Location | 297-1073 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAGCAGAGGGATGATGTAAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTAACTAGAGGTAATGGAATTACTCATAGAGTAGGAAAACGGTTCTGCATTAAGTCCATATATATTTTAGGAAAAATATGGATGGATGAGAATATCAAGAAGCAGAACCATACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGCCCAAGCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGTACAGCCACTGTGAAGAATGACCTCCGAGACAGATATCAAGTTTTGCGGAAATTTCATGCAACTGTTGTCGGTGGACCATCTGGGATGAAAGAGCAGGCATTACTTAAAAGATTTTTTAGAATTAATAATCATGTAGTTTATAATCATCAAGAGAATGCTAAGTATGAGAATCATACTGAGAATGCTCTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCTGTGTATGCTACGTTGAAAATACGTATCTATTTCTATGTTTCAGTTGGGAATTAA |
Protein Sequence | MSKRPGDIIISTPASKVRRRLNFDNPYTSRAAVPIVPGTSRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGNGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALLKRFFRINNHVVYNHQENAKYENHTENALLLYMACTHASNPVYATLKIRIYFYVSVGN |
NCBI Accession | ABF61897.1 |
---|---|
Location | 1070-1474 |
Gene Name | C3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTTACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATCATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAAGACCCAAGTTAGAAAATATTTAAACAATCTTGGTGTAATTTCAATTAATAATGTAATTAGAGCAATAGAATATGTATTGTTTGATGTAATCAACGGGACCTTATGGGTGGAACAAAATTATGATATAAAATTCAAACTTTATTAA |
Protein Sequence | MDLRTGELITAHQAQSGVYTWEIANPLYFSITEHSKRPFNYNHDIITVQLRFNHNLRKELGIHKCFMTFKIWTTLQPQTGLFLRVFKTQVRKYLNNLGVISINNVIRAIEYVLFDVINGTLWVEQNYDIKFKLY |
NCBI Accession | ABF61896.1 |
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Location | 1215-1622 |
Gene Name | C2 |
Protein Name | transcriptional activation protein |
Coding Region | ATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAGATTCCCATCAAGGTCCAACACAAAACAGCCAAGCAGAGGCTTCAACGGAGGAAGAGGATAGACCTTAATTGCGGGTGCTCGTACTACTTGTCACTCAACTGTCGCAACCATGGATTTACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATCATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAA |
Protein Sequence | MRSSSPSNSHCTQIPIKVQHKTAKQRLQRRKRIDLNCGCSYYLSLNCRNHGFTHRGTHHCASGTEWRLYLGNRQSPIFQHHGTLEETIQLQPRHHHSTTPIQPQPKEGTGDSQMFHDLQDLDNLTASDWSFLKSL |
NCBI Accession | ABF61894.1 |
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Location | 1516-2610 |
Gene Name | C1 |
Protein Name | replication-associated protein |
Coding Region | ATGCCTAGAGCAGGTCGTTTTAGCATCAAAGCCAAAAATTATTTCCTCACATACCCTAAATGTTCTCTTTCAAAAGAAGAAGCATTAACTCAACTACGAGCCCTTCAAACACCTACAAATAAGCGTTTCATCAAAATTTGCAGAGAGCTTCACGAGAATGGGGAACCTCATCTGCATGCCCTCATTCAGTTCGAAGGAAAGTACAATTGTACCAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCCACAAGGATGGAGATACACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAAACGCAGGATCCGCTGAAGCCGCTTTGGCTATTATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTAAAGTGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGATTATGTTTCTCCTTTTTTATGTTCTTCTTTCGATCAAGTTCCAGAAGAGCTTGAAGAGTGGGCGGCGGCGAATGTTGTCAGTACCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGATTGAAGGGGATAGTCGTACCGGGAAAACAATGTGGGCTAGGTCATTAGGACCACACAATTATTTGTGTGGTCATCTTGATCTCAGTCCAAAGGTGTACAGTAATAATGCATGGTACAACGTCATTGATGACGTCGATCCGCATTATCTAAAACACTTCAAGGAATTCATGGGCGCACAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACTTCATCATATAAAGAGTACTTGGACGAGGAAAAGAACGCACCACTAAAGGCGTGGGCAATTAAAAATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAGATTCCCATCAAGGTCCAACACAAAACAGCCAAGCAGAGGCTTCAACGGAGGAAGAGGATAGACCTTAA |
Protein Sequence | MPRAGRFSIKAKNYFLTYPKCSLSKEEALTQLRALQTPTNKRFIKICRELHENGEPHLHALIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIHKDGDTLEWGEFQIDGRSARGGCHNANDACAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPLEDYVSPFLCSSFDQVPEELEEWAAANVVSTAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAPLKAWAIKNAIFVTIQQPLYSDSHQGPTQNSQAEASTEEEDRP |
NCBI Accession | ABF61899.1 |
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Location | 2196-2453 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGGAACCTCATCTGCATGCCCTCATTCAGTTCGAAGGAAAGTACAATTGTACCAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCCACAAGGATGGAGATACACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAA |
Protein Sequence | MGNLICMPSFSSKESTIVPITDSSTWYPQPGQHISIRTFRELNQAPTSSPTSTRMEIHSNGGNSRSTAEVLEEAAIMLTTHAPRH |
1 |
Avedi EK, et al. Virol J. 2021 Jan 6;18(1):2. doi: 10.1186/s12985-020-01466-z. PMID: 33407584 |
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2 |
A New Geminivirus Associated with a Leaf Curl Disease of Tomato in Tanzania. Chiang BT, et al. Plant Dis. 1997 Jan;81(1):111. doi: 10.1094/PDIS.1997.81.1.111B. PMID: 30870927 |
3 |
Shih SL, et al. Plant Dis. 2006 Dec;90(12):1550. doi: 10.1094/PD-90-1550C. PMID: 30780977 |
4 |
Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses. Rajabu CA, et al. J Virol Methods. 2018 Jun;256:89-99. doi: 10.1016/j.jviromet.2018.03.002. Epub 2018 Mar 9. PMID: 29530481 |
5 |
Mwaipopo B, et al. Plant Dis. 2018 Nov;102(11):2361-2370. doi: 10.1094/PDIS-01-18-0198-RE. Epub 2018 Sep 19. PMID: 30252625 |
6 |
First Molecular Identification of a Begomovirus Isolated from Tomato in Madagascar. Delatte H, et al. Plant Dis. 2002 Dec;86(12):1404. doi: 10.1094/PDIS.2002.86.12.1404C. PMID: 30818457 |
7 |
Management of whitefly-transmitted viruses in open-field production systems. Lapidot M, et al. Adv Virus Res. 2014;90:147-206. doi: 10.1016/B978-0-12-801246-8.00003-2. PMID: 25410102 |
8 |
A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina. Mollel HG, et al. Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29. PMID: 27900540 |
9 |
Kyallo M, et al. Arch Virol. 2017 May;162(5):1393-1396. doi: 10.1007/s00705-016-3217-9. Epub 2017 Jan 9. PMID: 28070648 |
10 |
Reyes MI, et al. Plant J. 2017 Dec;92(5):796-807. doi: 10.1111/tpj.13716. Epub 2017 Oct 24. PMID: 28901681 |