Tomato leaf curl Tanzania virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCAGATGGCCGCGCCCGAAAAAGAAAAAGTTGACCCCCCATGATTTATTGTCAGCCAATGAGAATAGCGCCTGAAAGCTTAGATATTTATTTTTGTCTTTATATACTTGGCTGTTAAGTAGTAACCGCTGTCATAATGTGGGATCCGTTAGTAAATGAGTTTCCAGACTCTGTTCACGGGTTTCGTTGTATGCTTGCAATAAAATATTTACAGGCCGTTGAGTCCACTTACGAGCCCAATACATTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCAGAGATTATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAGCAGAGGGATGATGTAAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTAACTAGAGGTAATGGAATTACTCATAGAGTAGGAAAACGGTTCTGCATTAAGTCCATATATATTTTAGGAAAAATATGGATGGATGAGAATATCAAGAAGCAGAACCATACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGCCCAAGCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGTACAGCCACTGTGAAGAATGACCTCCGAGACAGATATCAAGTTTTGCGGAAATTTCATGCAACTGTTGTCGGTGGACCATCTGGGATGAAAGAGCAGGCATTACTTAAAAGATTTTTTAGAATTAATAATCATGTAGTTTATAATCATCAAGAGAATGCTAAGTATGAGAATCATACTGAGAATGCTCTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCTGTGTATGCTACGTTGAAAATACGTATCTATTTCTATGTTTCAGTTGGGAATTAATAAAGTTTGAATTTTATATCATAATTTTGTTCCACCCATAAGGTCCCGTTGATTACATCAAACAATACATATTCTATTGCTCTAATTACATTATTAATTGAAATTACACCAAGATTGTTTAAATATTTTCTAACTTGGGTCTTAAAGACTCTTAAGAAAAGACCAGTCTGAGGCTGTAAGGTTGTCCAGATCTTGAAGGTCATGAAACATTTGTGAATCCCCAGTTCCTTCCTTAGGTTGTGGTTGAATCGGAGTTGTACTGTGATGATGTCGTGGTTGTAGTTGAATGGTCTCTTCGAGTGTTCCGTGATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTATAGACGCCACTCTGTGCCTGATGCGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTGCGACAGTTGAGTGACAAGTAGTACGAGCACCCGCAATTAAGGTCTATCCTCTTCCTCCGTTGAAGCCTCTGCTTGGCTGTTTTGTGTTGGACCTTGATGGGAATCTGAGTACAATGGCTGTTGGATGGTGACGAAGATCGCATTTTTAATTGCCCACGCCTTTAGTGGTGCGTTCTTTTCCTCGTCCAAGTACTCTTTATATGATGAAGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGTGCGCCCATGAATTCCTTGAAGTGTTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCATGCATTATTACTGTACACCTTTGGACTGAGATCAAGATGACCACACAAATAATTGTGTGGTCCTAATGACCTAGCCCACATTGTTTTCCCGGTACGACTATCCCCTTCAATCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGTACTGACAACATTCGCCGCCGCCCACTCTTCAAGCTCTTCTGGAACTTGATCGAAAGAAGAACATAAAAAAGGAGAAACATAATCCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACACTTTAAATTATGATACTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATAATAGCCAAAGCGGCTTCAGCGGATCCTGCGTTTAATGCCTCGGCGCATGCGTCGTTAGCATTATGGCAGCCTCCTCTAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTGTATCTCCATCCTTGTGGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTGGTACAATTGTACTTTCCTTCGAACTGAATGAGGGCATGCAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAAATTTTGATGAAACGCTTATTTGTAGGTGTTTGAAGGGCTCGTAGTTGAGTTAATGCTTCTTCTTTTGAAAGAGAACATTTAGGGTATGTGAGGAAATAATTTTTGGCTTTGATGCTAAAACGACCTGCTCTAGGCATATTGAATGTCGTATTGCAATTGGGGGGCACTCAAAGTCTATGGCAATTGGGGGAATTGGGGGACAATATATACTTGGTTACCTAATGGCATAATTGTAATTTGTTTAAATTAAATTTTGAAATCTGAATTTGAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
ABF61898.1
|
|
Location
|
137-487 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCGTTAGTAAATGAGTTTCCAGACTCTGTTCACGGGTTTCGTTGTATGCTTGCAATAAAATATTTACAGGCCGTTGAGTCCACTTACGAGCCCAATACATTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCAGAGATTATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLVNEFPDSVHGFRCMLAIKYLQAVESTYEPNTLGHDLIRDLICVVRARDYVEATRRYNHFNARLEGASKAELRQPVYQPCCCPHRPRHKQTSIMDLQAHVSKAQDVQNVQKP |
|
NCBI Accession
|
ABF61895.1
|
|
Location
|
297-1073 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAGCAGAGGGATGATGTAAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTAACTAGAGGTAATGGAATTACTCATAGAGTAGGAAAACGGTTCTGCATTAAGTCCATATATATTTTAGGAAAAATATGGATGGATGAGAATATCAAGAAGCAGAACCATACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGCCCAAGCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGTACAGCCACTGTGAAGAATGACCTCCGAGACAGATATCAAGTTTTGCGGAAATTTCATGCAACTGTTGTCGGTGGACCATCTGGGATGAAAGAGCAGGCATTACTTAAAAGATTTTTTAGAATTAATAATCATGTAGTTTATAATCATCAAGAGAATGCTAAGTATGAGAATCATACTGAGAATGCTCTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCTGTGTATGCTACGTTGAAAATACGTATCTATTTCTATGTTTCAGTTGGGAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPASKVRRRLNFDNPYTSRAAVPIVPGTSRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGNGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALLKRFFRINNHVVYNHQENAKYENHTENALLLYMACTHASNPVYATLKIRIYFYVSVGN |
|
NCBI Accession
|
ABF61897.1
|
|
Location
|
1070-1474 |
|
Gene Name
|
C3 |
|
Protein Name
|
replication enhancement protein |
|
Coding Region
|
ATGGATTTACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATCATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAAGACCCAAGTTAGAAAATATTTAAACAATCTTGGTGTAATTTCAATTAATAATGTAATTAGAGCAATAGAATATGTATTGTTTGATGTAATCAACGGGACCTTATGGGTGGAACAAAATTATGATATAAAATTCAAACTTTATTAA |
|
Protein Sequence
|
MDLRTGELITAHQAQSGVYTWEIANPLYFSITEHSKRPFNYNHDIITVQLRFNHNLRKELGIHKCFMTFKIWTTLQPQTGLFLRVFKTQVRKYLNNLGVISINNVIRAIEYVLFDVINGTLWVEQNYDIKFKLY |
|
NCBI Accession
|
ABF61896.1
|
|
Location
|
1215-1622 |
|
Gene Name
|
C2 |
|
Protein Name
|
transcriptional activation protein |
|
Coding Region
|
ATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAGATTCCCATCAAGGTCCAACACAAAACAGCCAAGCAGAGGCTTCAACGGAGGAAGAGGATAGACCTTAATTGCGGGTGCTCGTACTACTTGTCACTCAACTGTCGCAACCATGGATTTACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATCATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAA |
|
Protein Sequence
|
MRSSSPSNSHCTQIPIKVQHKTAKQRLQRRKRIDLNCGCSYYLSLNCRNHGFTHRGTHHCASGTEWRLYLGNRQSPIFQHHGTLEETIQLQPRHHHSTTPIQPQPKEGTGDSQMFHDLQDLDNLTASDWSFLKSL |
|
NCBI Accession
|
ABF61894.1
|
|
Location
|
1516-2610 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCTAGAGCAGGTCGTTTTAGCATCAAAGCCAAAAATTATTTCCTCACATACCCTAAATGTTCTCTTTCAAAAGAAGAAGCATTAACTCAACTACGAGCCCTTCAAACACCTACAAATAAGCGTTTCATCAAAATTTGCAGAGAGCTTCACGAGAATGGGGAACCTCATCTGCATGCCCTCATTCAGTTCGAAGGAAAGTACAATTGTACCAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCCACAAGGATGGAGATACACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAAACGCAGGATCCGCTGAAGCCGCTTTGGCTATTATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTAAAGTGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGATTATGTTTCTCCTTTTTTATGTTCTTCTTTCGATCAAGTTCCAGAAGAGCTTGAAGAGTGGGCGGCGGCGAATGTTGTCAGTACCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGATTGAAGGGGATAGTCGTACCGGGAAAACAATGTGGGCTAGGTCATTAGGACCACACAATTATTTGTGTGGTCATCTTGATCTCAGTCCAAAGGTGTACAGTAATAATGCATGGTACAACGTCATTGATGACGTCGATCCGCATTATCTAAAACACTTCAAGGAATTCATGGGCGCACAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACTTCATCATATAAAGAGTACTTGGACGAGGAAAAGAACGCACCACTAAAGGCGTGGGCAATTAAAAATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAGATTCCCATCAAGGTCCAACACAAAACAGCCAAGCAGAGGCTTCAACGGAGGAAGAGGATAGACCTTAA |
|
Protein Sequence
|
MPRAGRFSIKAKNYFLTYPKCSLSKEEALTQLRALQTPTNKRFIKICRELHENGEPHLHALIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIHKDGDTLEWGEFQIDGRSARGGCHNANDACAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPLEDYVSPFLCSSFDQVPEELEEWAAANVVSTAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAPLKAWAIKNAIFVTIQQPLYSDSHQGPTQNSQAEASTEEEDRP |
|
NCBI Accession
|
ABF61899.1
|
|
Location
|
2196-2453 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTGCATGCCCTCATTCAGTTCGAAGGAAAGTACAATTGTACCAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCCACAAGGATGGAGATACACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAA |
|
Protein Sequence
|
MGNLICMPSFSSKESTIVPITDSSTWYPQPGQHISIRTFRELNQAPTSSPTSTRMEIHSNGGNSRSTAEVLEEAAIMLTTHAPRH |