Tomato leaf curl Tanzania virus


Basic Information

Genus Begomovirus
Isolate TZ-Ten-05
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

DQ519575
ACCAGATGGCCGCGCCCGAAAAAGAAAAAGTTGACCCCCCATGATTTATTGTCAGCCAATGAGAATAGCGCCTGAAAGCTTAGATATTTATTTTTGTCTTTATATACTTGGCTGTTAAGTAGTAACCGCTGTCATAATGTGGGATCCGTTAGTAAATGAGTTTCCAGACTCTGTTCACGGGTTTCGTTGTATGCTTGCAATAAAATATTTACAGGCCGTTGAGTCCACTTACGAGCCCAATACATTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCAGAGATTATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAGCAGAGGGATGATGTAAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTAACTAGAGGTAATGGAATTACTCATAGAGTAGGAAAACGGTTCTGCATTAAGTCCATATATATTTTAGGAAAAATATGGATGGATGAGAATATCAAGAAGCAGAACCATACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGCCCAAGCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGTACAGCCACTGTGAAGAATGACCTCCGAGACAGATATCAAGTTTTGCGGAAATTTCATGCAACTGTTGTCGGTGGACCATCTGGGATGAAAGAGCAGGCATTACTTAAAAGATTTTTTAGAATTAATAATCATGTAGTTTATAATCATCAAGAGAATGCTAAGTATGAGAATCATACTGAGAATGCTCTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCTGTGTATGCTACGTTGAAAATACGTATCTATTTCTATGTTTCAGTTGGGAATTAATAAAGTTTGAATTTTATATCATAATTTTGTTCCACCCATAAGGTCCCGTTGATTACATCAAACAATACATATTCTATTGCTCTAATTACATTATTAATTGAAATTACACCAAGATTGTTTAAATATTTTCTAACTTGGGTCTTAAAGACTCTTAAGAAAAGACCAGTCTGAGGCTGTAAGGTTGTCCAGATCTTGAAGGTCATGAAACATTTGTGAATCCCCAGTTCCTTCCTTAGGTTGTGGTTGAATCGGAGTTGTACTGTGATGATGTCGTGGTTGTAGTTGAATGGTCTCTTCGAGTGTTCCGTGATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTATAGACGCCACTCTGTGCCTGATGCGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTGCGACAGTTGAGTGACAAGTAGTACGAGCACCCGCAATTAAGGTCTATCCTCTTCCTCCGTTGAAGCCTCTGCTTGGCTGTTTTGTGTTGGACCTTGATGGGAATCTGAGTACAATGGCTGTTGGATGGTGACGAAGATCGCATTTTTAATTGCCCACGCCTTTAGTGGTGCGTTCTTTTCCTCGTCCAAGTACTCTTTATATGATGAAGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGTGCGCCCATGAATTCCTTGAAGTGTTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTACCATGCATTATTACTGTACACCTTTGGACTGAGATCAAGATGACCACACAAATAATTGTGTGGTCCTAATGACCTAGCCCACATTGTTTTCCCGGTACGACTATCCCCTTCAATCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGTACTGACAACATTCGCCGCCGCCCACTCTTCAAGCTCTTCTGGAACTTGATCGAAAGAAGAACATAAAAAAGGAGAAACATAATCCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACACTTTAAATTATGATACTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATAATAGCCAAAGCGGCTTCAGCGGATCCTGCGTTTAATGCCTCGGCGCATGCGTCGTTAGCATTATGGCAGCCTCCTCTAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTGTATCTCCATCCTTGTGGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTGGTACAATTGTACTTTCCTTCGAACTGAATGAGGGCATGCAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAAATTTTGATGAAACGCTTATTTGTAGGTGTTTGAAGGGCTCGTAGTTGAGTTAATGCTTCTTCTTTTGAAAGAGAACATTTAGGGTATGTGAGGAAATAATTTTTGGCTTTGATGCTAAAACGACCTGCTCTAGGCATATTGAATGTCGTATTGCAATTGGGGGGCACTCAAAGTCTATGGCAATTGGGGGAATTGGGGGACAATATATACTTGGTTACCTAATGGCATAATTGTAATTTGTTTAAATTAAATTTTGAAATCTGAATTTGAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession ABF61898.1
Location 137-487
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCGTTAGTAAATGAGTTTCCAGACTCTGTTCACGGGTTTCGTTGTATGCTTGCAATAAAATATTTACAGGCCGTTGAGTCCACTTACGAGCCCAATACATTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCAGAGATTATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPDSVHGFRCMLAIKYLQAVESTYEPNTLGHDLIRDLICVVRARDYVEATRRYNHFNARLEGASKAELRQPVYQPCCCPHRPRHKQTSIMDLQAHVSKAQDVQNVQKP

NCBI Accession ABF61895.1
Location 297-1073
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGAGATATAATCATTTCAACGCCCGCCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAACCCGTATACCAGCCGTGCTGCTGTCCCCATCGTCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAGCAGAGGGATGATGTAAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTAACTAGAGGTAATGGAATTACTCATAGAGTAGGAAAACGGTTCTGCATTAAGTCCATATATATTTTAGGAAAAATATGGATGGATGAGAATATCAAGAAGCAGAACCATACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGCCCAAGCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGTACAGCCACTGTGAAGAATGACCTCCGAGACAGATATCAAGTTTTGCGGAAATTTCATGCAACTGTTGTCGGTGGACCATCTGGGATGAAAGAGCAGGCATTACTTAAAAGATTTTTTAGAATTAATAATCATGTAGTTTATAATCATCAAGAGAATGCTAAGTATGAGAATCATACTGAGAATGCTCTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCTGTGTATGCTACGTTGAAAATACGTATCTATTTCTATGTTTCAGTTGGGAATTAA
Protein Sequence MSKRPGDIIISTPASKVRRRLNFDNPYTSRAAVPIVPGTSRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGNGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALLKRFFRINNHVVYNHQENAKYENHTENALLLYMACTHASNPVYATLKIRIYFYVSVGN

NCBI Accession ABF61897.1
Location 1070-1474
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTTACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATCATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAAGACCCAAGTTAGAAAATATTTAAACAATCTTGGTGTAATTTCAATTAATAATGTAATTAGAGCAATAGAATATGTATTGTTTGATGTAATCAACGGGACCTTATGGGTGGAACAAAATTATGATATAAAATTCAAACTTTATTAA
Protein Sequence MDLRTGELITAHQAQSGVYTWEIANPLYFSITEHSKRPFNYNHDIITVQLRFNHNLRKELGIHKCFMTFKIWTTLQPQTGLFLRVFKTQVRKYLNNLGVISINNVIRAIEYVLFDVINGTLWVEQNYDIKFKLY

NCBI Accession ABF61896.1
Location 1215-1622
Gene Name C2
Protein Name transcriptional activation protein
Coding Region ATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAGATTCCCATCAAGGTCCAACACAAAACAGCCAAGCAGAGGCTTCAACGGAGGAAGAGGATAGACCTTAATTGCGGGTGCTCGTACTACTTGTCACTCAACTGTCGCAACCATGGATTTACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATCATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAA
Protein Sequence MRSSSPSNSHCTQIPIKVQHKTAKQRLQRRKRIDLNCGCSYYLSLNCRNHGFTHRGTHHCASGTEWRLYLGNRQSPIFQHHGTLEETIQLQPRHHHSTTPIQPQPKEGTGDSQMFHDLQDLDNLTASDWSFLKSL

NCBI Accession ABF61894.1
Location 1516-2610
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTAGAGCAGGTCGTTTTAGCATCAAAGCCAAAAATTATTTCCTCACATACCCTAAATGTTCTCTTTCAAAAGAAGAAGCATTAACTCAACTACGAGCCCTTCAAACACCTACAAATAAGCGTTTCATCAAAATTTGCAGAGAGCTTCACGAGAATGGGGAACCTCATCTGCATGCCCTCATTCAGTTCGAAGGAAAGTACAATTGTACCAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCCACAAGGATGGAGATACACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAAACGCAGGATCCGCTGAAGCCGCTTTGGCTATTATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTAAAGTGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGATTATGTTTCTCCTTTTTTATGTTCTTCTTTCGATCAAGTTCCAGAAGAGCTTGAAGAGTGGGCGGCGGCGAATGTTGTCAGTACCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGATTGAAGGGGATAGTCGTACCGGGAAAACAATGTGGGCTAGGTCATTAGGACCACACAATTATTTGTGTGGTCATCTTGATCTCAGTCCAAAGGTGTACAGTAATAATGCATGGTACAACGTCATTGATGACGTCGATCCGCATTATCTAAAACACTTCAAGGAATTCATGGGCGCACAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACTTCATCATATAAAGAGTACTTGGACGAGGAAAAGAACGCACCACTAAAGGCGTGGGCAATTAAAAATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAGATTCCCATCAAGGTCCAACACAAAACAGCCAAGCAGAGGCTTCAACGGAGGAAGAGGATAGACCTTAA
Protein Sequence MPRAGRFSIKAKNYFLTYPKCSLSKEEALTQLRALQTPTNKRFIKICRELHENGEPHLHALIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIHKDGDTLEWGEFQIDGRSARGGCHNANDACAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPLEDYVSPFLCSSFDQVPEELEEWAAANVVSTAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAPLKAWAIKNAIFVTIQQPLYSDSHQGPTQNSQAEASTEEEDRP

NCBI Accession ABF61899.1
Location 2196-2453
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCATGCCCTCATTCAGTTCGAAGGAAAGTACAATTGTACCAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCCACAAGGATGGAGATACACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAA
Protein Sequence MGNLICMPSFSSKESTIVPITDSSTWYPQPGQHISIRTFRELNQAPTSSPTSTRMEIHSNGGNSRSTAEVLEEAAIMLTTHAPRH

References More References in PubMed

1

Metagenomic analyses and genetic diversity of Tomato leaf curl Arusha virus affecting tomato plants in Kenya.

Avedi EK, et al.  Virol J. 2021 Jan 6;18(1):2. doi: 10.1186/s12985-020-01466-z.

PMID: 33407584

2

A New Geminivirus Associated with a Leaf Curl Disease of Tomato in Tanzania.

Chiang BT, et al.  Plant Dis. 1997 Jan;81(1):111. doi: 10.1094/PDIS.1997.81.1.111B.

PMID: 30870927

3

Molecular Characterization of a Distinct Begomovirus Associated with Tomato Leaf Curl Disease in Arusha of Tanzania.

Shih SL, et al.  Plant Dis. 2006 Dec;90(12):1550. doi: 10.1094/PD-90-1550C.

PMID: 30780977

4

Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses.

Rajabu CA, et al.  J Virol Methods. 2018 Jun;256:89-99. doi: 10.1016/j.jviromet.2018.03.002. Epub 2018 Mar 9.

PMID: 29530481

5

Comprehensive Surveys of Bean common mosaic virus and Bean common mosaic necrosis virus and Molecular Evidence for Occurrence of Other Phaseolus vulgaris Viruses in Tanzania.

Mwaipopo B, et al.  Plant Dis. 2018 Nov;102(11):2361-2370. doi: 10.1094/PDIS-01-18-0198-RE. Epub 2018 Sep 19.

PMID: 30252625

6

First Molecular Identification of a Begomovirus Isolated from Tomato in Madagascar.

Delatte H, et al.  Plant Dis. 2002 Dec;86(12):1404. doi: 10.1094/PDIS.2002.86.12.1404C.

PMID: 30818457

7

Management of whitefly-transmitted viruses in open-field production systems.

Lapidot M, et al.  Adv Virus Res. 2014;90:147-206. doi: 10.1016/B978-0-12-801246-8.00003-2.

PMID: 25410102

8

A novel East African monopartite begomovirus-betasatellite complex that infects Vernonia amygdalina.

Mollel HG, et al.  Arch Virol. 2017 Apr;162(4):1079-1082. doi: 10.1007/s00705-016-3175-2. Epub 2016 Nov 29.

PMID: 27900540

9

Deinbollia mosaic virus: a novel begomovirus infecting the sapindaceous weed Deinbollia borbonica in Kenya and Tanzania.

Kyallo M, et al.  Arch Virol. 2017 May;162(5):1393-1396. doi: 10.1007/s00705-016-3217-9. Epub 2017 Jan 9.

PMID: 28070648

10

A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae.

Reyes MI, et al.  Plant J. 2017 Dec;92(5):796-807. doi: 10.1111/tpj.13716. Epub 2017 Oct 24.

PMID: 28901681