Tomato leaf curl Taiwan virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000840145.1 |
| Release date |
2015/2/12 |
| Submitter |
Chiang,B.T., Green,S.K., Tsai,W.S., Nakhla,M.K., Maxwell,D.P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTAAGTGGGTCCTACGCACTAATGTTGGTCGGCCAATAGAAACGCTCCCTCAAAGCTTATTTACAAAAATACCCGTTATAAATACTTGGTGGCTAAGTTACAATCAGTAAAATGTGGGATCCACTTTTAAATGATTTTCCGGAGTCTGTGCATGGTCTACGGTGTATGCTTGCCATTAAGTATCTACATTTTGTAGAAAATACATATTCCCCGGATACTTTGGGTTACGATCTCATACGTGATTTGATTTTAGTTATCCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGCCAGCCCATATGGCAACCGTGTAGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGTTCATGGGTGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAAAAGCCCAGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTACAGTCATTTGAACAGCGTCATGATATAGCCCATGTGGGCAAGGTAATATGTGTGTCCGATGTCACACGAGGTAATGGGCTGACCCATCGTGTTGGGAAGAGGTTTTGTGTTAAGTCCATTTATGTGTTGGGTAAGATATGGATGGATGAGAATATCAAGACGAAGAATCACACAAATACTGTGATGTTCTTCTTAGTCCGTGATAGAAGGCCTTTTGGTACTCCACAAGATTTCGGTCAGGTCTTTAATATGTATGATAATGAGCCTAGCACTGCAACGGTGAAGAATGACAATAGAGATAGGTTTCAAGTTCTCCGTCGATTCCAGGCTACGGTGACTGGCGGTCAGTATGCGTGCAAAGAACAAGCTCTAGTTAGGAAGTTTATGAAAATCAACAACCATGTTACTTATAATCACCAAGAGGCTGCTAAATATGATAACCATACAGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATTTATTTCTATGATTCTGTTCAAAATTAATAAATTTTAAATGTTATTATATGTGAAAACTGAGCATCGACTGTGCCCTCTATTACATTGTATAGTACATTTGTCATTGCTCTAATTACATTGTTTAAACTAATAACTCCTAAATTGTCTAAATACTTCATACATTGATATTTAAATACCCTCAAGAAATGCGAGGTCTGAGGTTGTAAACGAGTCCAAATCTGGCAAATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGAATTTGTATTGTCATGACGTCGTGGTTCTGTAGAAATGGTCTCTGGTTGTGTTGTGTTATTTTGAAATAGAGGGGATTGTTGACTGTCCAGGTATACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGTGATGCGCAGTTAATTCCAAGATAATAAGAGCACCCACAAGGAAGATCAACCCTCCGCCTGCGAATTGGTCTCTTCTTCGCTATTTTGTGTTGGACCTTGATTGGCACGTGAGTAGAGTGGCTCGGTGAGGGTGATGAATTCCGCATTCTTTAAAGCCCAGTCTTTGAGTGCGAAATTCTTTTCTTCGTCTAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTCGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCCTCATTGTTGTAGACTCTTGGGCTTAGGTCAAGATGACCACACAAGTAATTGTGTGGGCCTAGAGACCTGGCCCAAAGTGTCTTCCCTGTACGACTCTCTCCCTCTACCACAATACTCATGGGTCTCCATGGCCGCGCAGCGGAATCCCTCACGTTCTCGGCAACCCATTCTACAAGTTCTACTGGAACTTGATCAAATGAAGAAGAATTAAAAGGAGAAATATAAACCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCTCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAATTCCATGATCAAGCACGTCTCCGTCTTTCTCCATATAGGTTTTGACATCTGTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTGTTATTTTTACATTGGAATTTTCCTTCGAATTGGATGAGAATGTGCAGGTGAGGAGCCCCATCTTCGTGAAGCTCTCTGCAAACCCTAATGAATAGCTTATTTGTTGGGGTTTGTAGAGCTTGTATTTGGGAAAGTGCCTCTTCTTTGGTTAGGGAGCAGTGTGGATATGTGAGGAAGTAGTTCTTCGCATTTATCCTGAATTTATTAAGTGGATGCATGTTGACTTGGTCAATCGGTGTCTCTCAAACTTCTCTATGTATCGGTGTATTGGGGTCTTATTTATACCTGGACACTAAATGGCATTTATGTAATTACATAAATTTACCAATGGGTAAAGCGGCCATCCGTTTAATATT
Gene Information
|
NCBI Accession
|
NP_632014.1
|
|
Location
|
131-472 |
|
Gene Name
|
V2 |
|
Protein Name
|
precoat protein |
|
Coding Region
|
ATGTGGGATCCACTTTTAAATGATTTTCCGGAGTCTGTGCATGGTCTACGGTGTATGCTTGCCATTAAGTATCTACATTTTGTAGAAAATACATATTCCCCGGATACTTTGGGTTACGATCTCATACGTGATTTGATTTTAGTTATCCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGCCAGCCCATATGGCAACCGTGTAGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGTTCATGGGTGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAA |
|
Protein Sequence
|
MWDPLLNDFPESVHGLRCMLAIKYLHFVENTYSPDTLGYDLIRDLILVIRARDYVEATRRYSHFHSRFQGSSPSELRQPIWQPCSCPHCPRHKQKEFMGESALVQKAQDVQDV |
|
NCBI Accession
|
NP_632015.1
|
|
Location
|
291-1064 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGCCAGCCCATATGGCAACCGTGTAGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGTTCATGGGTGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAAAAGCCCAGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTACAGTCATTTGAACAGCGTCATGATATAGCCCATGTGGGCAAGGTAATATGTGTGTCCGATGTCACACGAGGTAATGGGCTGACCCATCGTGTTGGGAAGAGGTTTTGTGTTAAGTCCATTTATGTGTTGGGTAAGATATGGATGGATGAGAATATCAAGACGAAGAATCACACAAATACTGTGATGTTCTTCTTAGTCCGTGATAGAAGGCCTTTTGGTACTCCACAAGATTTCGGTCAGGTCTTTAATATGTATGATAATGAGCCTAGCACTGCAACGGTGAAGAATGACAATAGAGATAGGTTTCAAGTTCTCCGTCGATTCCAGGCTACGGTGACTGGCGGTCAGTATGCGTGCAAAGAACAAGCTCTAGTTAGGAAGTTTATGAAAATCAACAACCATGTTACTTATAATCACCAAGAGGCTGCTAAATATGATAACCATACAGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATTTATTTCTATGATTCTGTTCAAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFASPYGNRVAAPTVLVTNKKSSWVNRPLFRKPKMYRMYKSPDVPRGCEGPCKVQSFEQRHDIAHVGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYACKEQALVRKFMKINNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
NP_632016.1
|
|
Location
|
1061-1465 |
|
Gene Name
|
C3 |
|
Protein Name
|
putative replication enhancer |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGACAGTCAACAATCCCCTCTATTTCAAAATAACACAACACAACCAGAGACCATTTCTACAGAACCACGACGTCATGACAATACAAATTCAATTCAACTACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATTTGCCAGATTTGGACTCGTTTACAACCTCAGACCTCGCATTTCTTGAGGGTATTTAAATATCAATGTATGAAGTATTTAGACAATTTAGGAGTTATTAGTTTAAACAATGTAATTAGAGCAATGACAAATGTACTATACAATGTAATAGAGGGCACAGTCGATGCTCAGTTTTCACATATAATAACATTTAAAATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAAQAENGVYTWTVNNPLYFKITQHNQRPFLQNHDVMTIQIQFNYNLRKALGIHQCFLICQIWTRLQPQTSHFLRVFKYQCMKYLDNLGVISLNNVIRAMTNVLYNVIEGTVDAQFSHIITFKIY |
|
NCBI Accession
|
NP_632017.1
|
|
Location
|
1206-1613 |
|
Gene Name
|
C2 |
|
Protein Name
|
Trap protein |
|
Coding Region
|
ATGCGGAATTCATCACCCTCACCGAGCCACTCTACTCACGTGCCAATCAAGGTCCAACACAAAATAGCGAAGAAGAGACCAATTCGCAGGCGGAGGGTTGATCTTCCTTGTGGGTGCTCTTATTATCTTGGAATTAACTGCGCATCACATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGACAGTCAACAATCCCCTCTATTTCAAAATAACACAACACAACCAGAGACCATTTCTACAGAACCACGACGTCATGACAATACAAATTCAATTCAACTACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATTTGCCAGATTTGGACTCGTTTACAACCTCAGACCTCGCATTTCTTGAGGGTATTTAA |
|
Protein Sequence
|
MRNSSPSPSHSTHVPIKVQHKIAKKRPIRRRRVDLPCGCSYYLGINCASHGFSHRGTHHCSSSREWRVYLDSQQSPLFQNNTTQPETISTEPRRHDNTNSIQLQPEESVGNTPVFSNLPDLDSFTTSDLAFLEGI |
|
NCBI Accession
|
NP_632018.1
|
|
Location
|
1513-2601 |
|
Gene Name
|
C1 |
|
Protein Name
|
Rep protein |
|
Coding Region
|
ATGCATCCACTTAATAAATTCAGGATAAATGCGAAGAACTACTTCCTCACATATCCACACTGCTCCCTAACCAAAGAAGAGGCACTTTCCCAAATACAAGCTCTACAAACCCCAACAAATAAGCTATTCATTAGGGTTTGCAGAGAGCTTCACGAAGATGGGGCTCCTCACCTGCACATTCTCATCCAATTCGAAGGAAAATTCCAATGTAAAAATAACAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAACAGATGTCAAAACCTATATGGAGAAAGACGGAGACGTGCTTGATCATGGAATTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGAGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTAGAGGTTTATATTTCTCCTTTTAATTCTTCTTCATTTGATCAAGTTCCAGTAGAACTTGTAGAATGGGTTGCCGAGAACGTGAGGGATTCCGCTGCGCGGCCATGGAGACCCATGAGTATTGTGGTAGAGGGAGAGAGTCGTACAGGGAAGACACTTTGGGCCAGGTCTCTAGGCCCACACAATTACTTGTGTGGTCATCTTGACCTAAGCCCAAGAGTCTACAACAATGAGGCATGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCGACACCAAATACGGGAAACCAATTCAAATTAAAGGTGGTATCCCAACAATCTTCCTTTGCAATCCAGGGCCAACATCATCATATAAAGAGTACTTAGACGAAGAAAAGAATTTCGCACTCAAAGACTGGGCTTTAAAGAATGCGGAATTCATCACCCTCACCGAGCCACTCTACTCACGTGCCAATCAAGGTCCAACACAAAATAGCGAAGAAGAGACCAATTCGCAGGCGGAGGGTTGA |
|
Protein Sequence
|
MHPLNKFRINAKNYFLTYPHCSLTKEEALSQIQALQTPTNKLFIRVCRELHEDGAPHLHILIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYMEKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKAEALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEVYISPFNSSSFDQVPVELVEWVAENVRDSAARPWRPMSIVVEGESRTGKTLWARSLGPHNYLCGHLDLSPRVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSDTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNFALKDWALKNAEFITLTEPLYSRANQGPTQNSEEETNSQAEG |
|
NCBI Accession
|
NP_632019.1
|
|
Location
|
2151-2444 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGCTCCTCACCTGCACATTCTCATCCAATTCGAAGGAAAATTCCAATGTAAAAATAACAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAACAGATGTCAAAACCTATATGGAGAAAGACGGAGACGTGCTTGATCATGGAATTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGAGGCCCTCAATATATTAA |
|
Protein Sequence
|
MGLLTCTFSSNSKENSNVKITDSSTSHPQPGQHISIRTFRELRAQQMSKPIWRKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY |