Tomato leaf curl Taiwan virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840145.1
Release date 2015/2/12
Submitter Chiang,B.T., Green,S.K., Tsai,W.S., Nakhla,M.K., Maxwell,D.P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003898
ACCGGATGGCCGCGATTTTTTAAGTGGGTCCTACGCACTAATGTTGGTCGGCCAATAGAAACGCTCCCTCAAAGCTTATTTACAAAAATACCCGTTATAAATACTTGGTGGCTAAGTTACAATCAGTAAAATGTGGGATCCACTTTTAAATGATTTTCCGGAGTCTGTGCATGGTCTACGGTGTATGCTTGCCATTAAGTATCTACATTTTGTAGAAAATACATATTCCCCGGATACTTTGGGTTACGATCTCATACGTGATTTGATTTTAGTTATCCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGCCAGCCCATATGGCAACCGTGTAGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGTTCATGGGTGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAAAAGCCCAGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTACAGTCATTTGAACAGCGTCATGATATAGCCCATGTGGGCAAGGTAATATGTGTGTCCGATGTCACACGAGGTAATGGGCTGACCCATCGTGTTGGGAAGAGGTTTTGTGTTAAGTCCATTTATGTGTTGGGTAAGATATGGATGGATGAGAATATCAAGACGAAGAATCACACAAATACTGTGATGTTCTTCTTAGTCCGTGATAGAAGGCCTTTTGGTACTCCACAAGATTTCGGTCAGGTCTTTAATATGTATGATAATGAGCCTAGCACTGCAACGGTGAAGAATGACAATAGAGATAGGTTTCAAGTTCTCCGTCGATTCCAGGCTACGGTGACTGGCGGTCAGTATGCGTGCAAAGAACAAGCTCTAGTTAGGAAGTTTATGAAAATCAACAACCATGTTACTTATAATCACCAAGAGGCTGCTAAATATGATAACCATACAGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATTTATTTCTATGATTCTGTTCAAAATTAATAAATTTTAAATGTTATTATATGTGAAAACTGAGCATCGACTGTGCCCTCTATTACATTGTATAGTACATTTGTCATTGCTCTAATTACATTGTTTAAACTAATAACTCCTAAATTGTCTAAATACTTCATACATTGATATTTAAATACCCTCAAGAAATGCGAGGTCTGAGGTTGTAAACGAGTCCAAATCTGGCAAATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGAATTTGTATTGTCATGACGTCGTGGTTCTGTAGAAATGGTCTCTGGTTGTGTTGTGTTATTTTGAAATAGAGGGGATTGTTGACTGTCCAGGTATACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGTGATGCGCAGTTAATTCCAAGATAATAAGAGCACCCACAAGGAAGATCAACCCTCCGCCTGCGAATTGGTCTCTTCTTCGCTATTTTGTGTTGGACCTTGATTGGCACGTGAGTAGAGTGGCTCGGTGAGGGTGATGAATTCCGCATTCTTTAAAGCCCAGTCTTTGAGTGCGAAATTCTTTTCTTCGTCTAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCAAAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTCGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCATGCCTCATTGTTGTAGACTCTTGGGCTTAGGTCAAGATGACCACACAAGTAATTGTGTGGGCCTAGAGACCTGGCCCAAAGTGTCTTCCCTGTACGACTCTCTCCCTCTACCACAATACTCATGGGTCTCCATGGCCGCGCAGCGGAATCCCTCACGTTCTCGGCAACCCATTCTACAAGTTCTACTGGAACTTGATCAAATGAAGAAGAATTAAAAGGAGAAATATAAACCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCTCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAATTCCATGATCAAGCACGTCTCCGTCTTTCTCCATATAGGTTTTGACATCTGTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTGTTATTTTTACATTGGAATTTTCCTTCGAATTGGATGAGAATGTGCAGGTGAGGAGCCCCATCTTCGTGAAGCTCTCTGCAAACCCTAATGAATAGCTTATTTGTTGGGGTTTGTAGAGCTTGTATTTGGGAAAGTGCCTCTTCTTTGGTTAGGGAGCAGTGTGGATATGTGAGGAAGTAGTTCTTCGCATTTATCCTGAATTTATTAAGTGGATGCATGTTGACTTGGTCAATCGGTGTCTCTCAAACTTCTCTATGTATCGGTGTATTGGGGTCTTATTTATACCTGGACACTAAATGGCATTTATGTAATTACATAAATTTACCAATGGGTAAAGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession NP_632014.1
Location 131-472
Gene Name V2
Protein Name precoat protein
Coding Region ATGTGGGATCCACTTTTAAATGATTTTCCGGAGTCTGTGCATGGTCTACGGTGTATGCTTGCCATTAAGTATCTACATTTTGTAGAAAATACATATTCCCCGGATACTTTGGGTTACGATCTCATACGTGATTTGATTTTAGTTATCCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGCCAGCCCATATGGCAACCGTGTAGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGTTCATGGGTGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAA
Protein Sequence MWDPLLNDFPESVHGLRCMLAIKYLHFVENTYSPDTLGYDLIRDLILVIRARDYVEATRRYSHFHSRFQGSSPSELRQPIWQPCSCPHCPRHKQKEFMGESALVQKAQDVQDV

NCBI Accession NP_632015.1
Location 291-1064
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGCCAGCCCATATGGCAACCGTGTAGCTGCCCCCACTGTCCTCGTCACAAACAAAAAGAGTTCATGGGTGAATCGGCCCTTGTTCAGAAAGCCCAAGATGTACAGGATGTATAAAAGCCCAGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTACAGTCATTTGAACAGCGTCATGATATAGCCCATGTGGGCAAGGTAATATGTGTGTCCGATGTCACACGAGGTAATGGGCTGACCCATCGTGTTGGGAAGAGGTTTTGTGTTAAGTCCATTTATGTGTTGGGTAAGATATGGATGGATGAGAATATCAAGACGAAGAATCACACAAATACTGTGATGTTCTTCTTAGTCCGTGATAGAAGGCCTTTTGGTACTCCACAAGATTTCGGTCAGGTCTTTAATATGTATGATAATGAGCCTAGCACTGCAACGGTGAAGAATGACAATAGAGATAGGTTTCAAGTTCTCCGTCGATTCCAGGCTACGGTGACTGGCGGTCAGTATGCGTGCAAAGAACAAGCTCTAGTTAGGAAGTTTATGAAAATCAACAACCATGTTACTTATAATCACCAAGAGGCTGCTAAATATGATAACCATACAGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATTTATTTCTATGATTCTGTTCAAAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFASPYGNRVAAPTVLVTNKKSSWVNRPLFRKPKMYRMYKSPDVPRGCEGPCKVQSFEQRHDIAHVGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYACKEQALVRKFMKINNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_632016.1
Location 1061-1465
Gene Name C3
Protein Name putative replication enhancer
Coding Region ATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGACAGTCAACAATCCCCTCTATTTCAAAATAACACAACACAACCAGAGACCATTTCTACAGAACCACGACGTCATGACAATACAAATTCAATTCAACTACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATTTGCCAGATTTGGACTCGTTTACAACCTCAGACCTCGCATTTCTTGAGGGTATTTAAATATCAATGTATGAAGTATTTAGACAATTTAGGAGTTATTAGTTTAAACAATGTAATTAGAGCAATGACAAATGTACTATACAATGTAATAGAGGGCACAGTCGATGCTCAGTTTTCACATATAATAACATTTAAAATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVYTWTVNNPLYFKITQHNQRPFLQNHDVMTIQIQFNYNLRKALGIHQCFLICQIWTRLQPQTSHFLRVFKYQCMKYLDNLGVISLNNVIRAMTNVLYNVIEGTVDAQFSHIITFKIY

NCBI Accession NP_632017.1
Location 1206-1613
Gene Name C2
Protein Name Trap protein
Coding Region ATGCGGAATTCATCACCCTCACCGAGCCACTCTACTCACGTGCCAATCAAGGTCCAACACAAAATAGCGAAGAAGAGACCAATTCGCAGGCGGAGGGTTGATCTTCCTTGTGGGTGCTCTTATTATCTTGGAATTAACTGCGCATCACATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGACAGTCAACAATCCCCTCTATTTCAAAATAACACAACACAACCAGAGACCATTTCTACAGAACCACGACGTCATGACAATACAAATTCAATTCAACTACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATTTGCCAGATTTGGACTCGTTTACAACCTCAGACCTCGCATTTCTTGAGGGTATTTAA
Protein Sequence MRNSSPSPSHSTHVPIKVQHKIAKKRPIRRRRVDLPCGCSYYLGINCASHGFSHRGTHHCSSSREWRVYLDSQQSPLFQNNTTQPETISTEPRRHDNTNSIQLQPEESVGNTPVFSNLPDLDSFTTSDLAFLEGI

NCBI Accession NP_632018.1
Location 1513-2601
Gene Name C1
Protein Name Rep protein
Coding Region ATGCATCCACTTAATAAATTCAGGATAAATGCGAAGAACTACTTCCTCACATATCCACACTGCTCCCTAACCAAAGAAGAGGCACTTTCCCAAATACAAGCTCTACAAACCCCAACAAATAAGCTATTCATTAGGGTTTGCAGAGAGCTTCACGAAGATGGGGCTCCTCACCTGCACATTCTCATCCAATTCGAAGGAAAATTCCAATGTAAAAATAACAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAACAGATGTCAAAACCTATATGGAGAAAGACGGAGACGTGCTTGATCATGGAATTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGAGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTAGAGGTTTATATTTCTCCTTTTAATTCTTCTTCATTTGATCAAGTTCCAGTAGAACTTGTAGAATGGGTTGCCGAGAACGTGAGGGATTCCGCTGCGCGGCCATGGAGACCCATGAGTATTGTGGTAGAGGGAGAGAGTCGTACAGGGAAGACACTTTGGGCCAGGTCTCTAGGCCCACACAATTACTTGTGTGGTCATCTTGACCTAAGCCCAAGAGTCTACAACAATGAGGCATGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCGACACCAAATACGGGAAACCAATTCAAATTAAAGGTGGTATCCCAACAATCTTCCTTTGCAATCCAGGGCCAACATCATCATATAAAGAGTACTTAGACGAAGAAAAGAATTTCGCACTCAAAGACTGGGCTTTAAAGAATGCGGAATTCATCACCCTCACCGAGCCACTCTACTCACGTGCCAATCAAGGTCCAACACAAAATAGCGAAGAAGAGACCAATTCGCAGGCGGAGGGTTGA
Protein Sequence MHPLNKFRINAKNYFLTYPHCSLTKEEALSQIQALQTPTNKLFIRVCRELHEDGAPHLHILIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYMEKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKAEALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEVYISPFNSSSFDQVPVELVEWVAENVRDSAARPWRPMSIVVEGESRTGKTLWARSLGPHNYLCGHLDLSPRVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSDTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNFALKDWALKNAEFITLTEPLYSRANQGPTQNSEEETNSQAEG

NCBI Accession NP_632019.1
Location 2151-2444
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGCTCCTCACCTGCACATTCTCATCCAATTCGAAGGAAAATTCCAATGTAAAAATAACAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAACAGATGTCAAAACCTATATGGAGAAAGACGGAGACGTGCTTGATCATGGAATTTTCCAGGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGAGGCCCTCAATATATTAA
Protein Sequence MGLLTCTFSSNSKENSNVKITDSSTSHPQPGQHISIRTFRELRAQQMSKPIWRKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Seed and Pollen Transmission of Tomato Leaf Curl New Delhi Virus, Tomato Leaf Curl Taiwan Virus, and Tomato Yellow Leaf Curl Thailand Virus in Cucumbers and Tomatoes.

Chang HH, et al.  Plant Dis. 2023 Jul;107(7):2002-2008. doi: 10.1094/PDIS-09-22-2164-RE. Epub 2023 Jun 21.

PMID: 36480735
2

Tomato leaf curl virus from Bangalore (ToLCV-Ban4): sequence comparison with Indian ToLCV isolates, detection in plants and insects, and vector relationships.

Muniyappa V, et al.  Arch Virol. 2000;145(8):1583-98. doi: 10.1007/s007050070078.

PMID: 11003471
3

Fungal F8-Culture Filtrate Induces Tomato Resistance against Tomato Yellow Leaf Curl Thailand Virus.

Chiu YS, et al.  Viruses. 2021 Jul 23;13(8):1434. doi: 10.3390/v13081434.

PMID: 34452299
4

The C2 protein of tomato leaf curl Taiwan virus is a pathogenicity determinant that interferes with expression of host genes encoding chromomethylases.

Tu YC, et al.  Physiol Plant. 2017 Dec;161(4):515-531. doi: 10.1111/ppl.12615. Epub 2017 Oct 6.

PMID: 28786123
5

First Report of Tomato yellow leaf curl Thailand virus in Taiwan.

Jan FJ, et al.  Plant Dis. 2007 Oct;91(10):1363. doi: 10.1094/PDIS-91-10-1363A.

PMID: 30780543
6

Vector Transmission of Tomato Yellow Leaf Curl Thailand Virus by the Whitefly Bemisia tabaci: Circulative or Propagative?

Li WH, et al.  Insects. 2021 Feb 20;12(2):181. doi: 10.3390/insects12020181.

PMID: 33672688
7

Engineering Plant Resistance to Tomato Yellow Leaf Curl Thailand Virus Using a Phloem-Specific Promoter Expressing Hairpin RNA.

Tzean Y, et al.  Mol Plant Microbe Interact. 2020 Jan;33(1):87-97. doi: 10.1094/MPMI-06-19-0158-R. Epub 2019 Nov 21.

PMID: 31638467
8

Molecular markers associated with resistance to squash leaf curl China virus and tomato leaf curl New Delhi virus in tropical pumpkin (Cucurbita moschata Duchesne ex Poir.) breeding line AVPU1426.

Schafleitner R, et al.  Sci Rep. 2024 Mar 21;14(1):6793. doi: 10.1038/s41598-024-57348-9.

PMID: 38514827
9

Priming of Plant Resistance to Heat Stress and Tomato Yellow Leaf Curl Thailand Virus With Plant-Derived Materials.

Tsai WA, et al.  Front Plant Sci. 2019 Jul 12;10:906. doi: 10.3389/fpls.2019.00906. eCollection 2019.

PMID: 31354773
10

First Report of Tomato yellow leaf curl Thailand virus Associated with Pepper Leaf Curl Disease in Taiwan.

Shih SL, et al.  Plant Dis. 2010 May;94(5):637. doi: 10.1094/PDIS-94-5-0637B.

PMID: 30754457