Tomato leaf curl Sulawesi virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000886855.1
Isolate Indonesia:Tompaso, North Sulawesi
Release date 2015/2/22
Submitter Tsai,W.S., Shih,S.L., Green,S.K., Lee,L.M., Luther,G.C., Ratulangi,M., Sembel,D.T., Jan,F.-J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_013413
ACCGAGGGCCGCGAAATTTTTTTCCGTACTGTGGTCCACGTTGACTGGCCAATCACATTTGAGCTTCAAAGCTTAGATAGTGCGTACCGCACTATAAAACTTGGGGGCCACGAAATAATGGCAAACATGTGGGATCCTCTAATTCATCCCTTTCCTGACACTCTGCACGGATTTCGATGTATGCTGGCAATAAAGTACTTACAATCCTTCGAGTGTAAGTATTCTCCGGATACTGTTGGGCGTGAATTTATCAGGGATCTTATTTGCATTTTGAGGTGCAAAAACTATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGATGTTCCTCGTGGCTGTGAAGGACCTTGTAAGGTCCAGTCGTATGAACAGAGACATGATATCTCTCATGTCGGTAAGGTATTGTGTGTCAGTGATGTAACTAGGGGAGGTGGTATAACTCATAGGGTAGGTAAACGTTTTTGTGTTAAGTCTGTTTACATACTAGGTAAAGTGTGGATGGATGAGAATATCAAAACCAAAAACCATACGAACAACTGTACGTTCTGGTTAGTTAGGGATAGGAGGCCTTATGGCACTCCGCAAGACTTTGGTCAGGTTTTTAATATGTATGATAACGAACCAAGTACCGCTACCGTGAAGAATGACCTGCGTGATCGATTCCAAGTGCTTCATCGATTTTCAGCTATGGTTACCGGTGGTCAATATGCTAGCAAGGAGCAAGCAATCGTGAAGAAGTTCTACAAGGTGAACAACTACGTCGTCTATAATCATCAGGAAGCTGCTAAATATGAAAATCACACGGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACATTGAAGATACGCATATATTTCTATGACAATGTAACAAATTAATATAAATTGAATTTTATTATATGAAGCATGTCTACATACATGGTCTCCTCTATTACATTCCATAAGACATGATTAACTGCTCTAATAACATTATTTACTGATACAACACCCAAACTATTCAGAAATTTACATACATGATATTTAAATACTCTTAAAAAATGCCAAGTCAGAGGTCGTAAACGAGTCCAAATGCGGAAGATTAAAAAACATCTGTGAATCCCCAGAGCTCTCCTGAGGTTGTGATTGAACTGGATCTGCATTTCTATGTAGTCCCAGTTGTTGTTGAACGATCTGGTTTTGTGCTTCAGCACCTTGAAATAGAGGGGATTTGGGACCATCCAAGTATAAACGCCACTCTGCGCCTGAGTTGCAGTGATGTACTCCCCTGTGCGAAAATCCACAACCATGACAGTTAAGGCTGAGATAGTATGAGCATCCACAATCTAAATCAATGCGTCTTCGCCTTGTGATTTTCTTTTTTGCAATTTTATGTTGAATTTTCTGTGGTACTTGTATATAATGGCTCGTTGAGGTAGATGAAGGTTGCATTTTTTGTAGCCCAGTCTTTTAGTGCTTTATTTTTTTCTTCTTCCAGATATTCTTTATATGAAGAAGATGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGGTAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTTTACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCCTCCATGGCCGCGCAGCGGCGTCAACAACATTTTCTTTTGCCCACTGTTCCAATATATGAGGAACATTATCAAATGAATCTCGACTAAATGGAGTGACATAAATTTGTTGTTGTGGTTTAAAGAGTTTATCTAGATTTGCATTTAAATTATGAAATTGAAATAGAAAGTCTCTGGGAAGTTTCTCTCTAATGATGTTCAAAGCTTCCCCTTTGGAAGCAGCATTTAAAGCAGCTGCCACAACATCGTTTGCTGCCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAAACAACCCCAGTCGAGGTAATCGCCGTCCTTCTGAATGTACGACTTGATATCGGACGAAGATCTTGCTCCCTGAAAATTGGGGTGGAATGATCTGCTAGAATTAGGATGGGATATGTCGAAATGTCTTGCATTTCTAAACTTGGCTTTACCTTTGAATTGGACCAAAGCATGGATGTGCAGAGACCCATCTTGGTGTTTTTCCTGTGAAACCCTAACGAAGAGTTTCTCGGAAGGGCATGAAATGCCTAGGGTCTTCTCCAGAACAGTTTCTTTAGACAGACTACACTGGGGATATGTGAGAAATATATTCTTAGCATTAACACAGAAAGAAGGATGACGTGGCATGGCTATTGGAGACTTCACTAACTCTATACACTGGGGGACAATGGAGACTCATATATACTAGAGTCCCTTAATGGCATAATGGTAATTAGACAGAGTTACTTTAATTTGAAATTTAAATTTTTTTTCCCAAAAGCGGCCCTCGTATAATATT

Gene Information

NCBI Accession YP_003254629.1
Location 118-480
Protein Name V2
Coding Region ATGGCAAACATGTGGGATCCTCTAATTCATCCCTTTCCTGACACTCTGCACGGATTTCGATGTATGCTGGCAATAAAGTACTTACAATCCTTCGAGTGTAAGTATTCTCCGGATACTGTTGGGCGTGAATTTATCAGGGATCTTATTTGCATTTTGAGGTGCAAAAACTATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGA
Protein Sequence MANMWDPLIHPFPDTLHGFRCMLAIKYLQSFECKYSPDTVGREFIRDLICILRCKNYAEAFHRYSVVTANVYNTPEAKLRESVQSPCSCPHCPRHVIQKTCLDRSSNVSETQILPCQKEQ

NCBI Accession YP_003254630.1
Location 287-1063
Protein Name V1
Coding Region ATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGATGTTCCTCGTGGCTGTGAAGGACCTTGTAAGGTCCAGTCGTATGAACAGAGACATGATATCTCTCATGTCGGTAAGGTATTGTGTGTCAGTGATGTAACTAGGGGAGGTGGTATAACTCATAGGGTAGGTAAACGTTTTTGTGTTAAGTCTGTTTACATACTAGGTAAAGTGTGGATGGATGAGAATATCAAAACCAAAAACCATACGAACAACTGTACGTTCTGGTTAGTTAGGGATAGGAGGCCTTATGGCACTCCGCAAGACTTTGGTCAGGTTTTTAATATGTATGATAACGAACCAAGTACCGCTACCGTGAAGAATGACCTGCGTGATCGATTCCAAGTGCTTCATCGATTTTCAGCTATGGTTACCGGTGGTCAATATGCTAGCAAGGAGCAAGCAATCGTGAAGAAGTTCTACAAGGTGAACAACTACGTCGTCTATAATCATCAGGAAGCTGCTAAATATGAAAATCACACGGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACATTGAAGATACGCATATATTTCTATGACAATGTAACAAATTAA
Protein Sequence MPKRSIDTVSSLPMSITRRRLNYGSQFSLPAAVPTAPGMSYKRRAWTGRPMYRKPRFYRARRSSDVPRGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGGGITHRVGKRFCVKSVYILGKVWMDENIKTKNHTNNCTFWLVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDLRDRFQVLHRFSAMVTGGQYASKEQAIVKKFYKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN

NCBI Accession YP_003254631.1
Location 1060-1470
Protein Name C3
Coding Region ATGGTTGTGGATTTTCGCACAGGGGAGTACATCACTGCAACTCAGGCGCAGAGTGGCGTTTATACTTGGATGGTCCCAAATCCCCTCTATTTCAAGGTGCTGAAGCACAAAACCAGATCGTTCAACAACAACTGGGACTACATAGAAATGCAGATCCAGTTCAATCACAACCTCAGGAGAGCTCTGGGGATTCACAGATGTTTTTTAATCTTCCGCATTTGGACTCGTTTACGACCTCTGACTTGGCATTTTTTAAGAGTATTTAAATATCATGTATGTAAATTTCTGAATAGTTTGGGTGTTGTATCAGTAAATAATGTTATTAGAGCAGTTAATCATGTCTTATGGAATGTAATAGAGGAGACCATGTATGTAGACATGCTTCATATAATAAAATTCAATTTATATTAA
Protein Sequence MVVDFRTGEYITATQAQSGVYTWMVPNPLYFKVLKHKTRSFNNNWDYIEMQIQFNHNLRRALGIHRCFLIFRIWTRLRPLTWHFLRVFKYHVCKFLNSLGVVSVNNVIRAVNHVLWNVIEETMYVDMLHIIKFNLY

NCBI Accession YP_003254632.1
Location 1205-1612
Protein Name C2
Coding Region ATGCAACCTTCATCTACCTCAACGAGCCATTATATACAAGTACCACAGAAAATTCAACATAAAATTGCAAAAAAGAAAATCACAAGGCGAAGACGCATTGATTTAGATTGTGGATGCTCATACTATCTCAGCCTTAACTGTCATGGTTGTGGATTTTCGCACAGGGGAGTACATCACTGCAACTCAGGCGCAGAGTGGCGTTTATACTTGGATGGTCCCAAATCCCCTCTATTTCAAGGTGCTGAAGCACAAAACCAGATCGTTCAACAACAACTGGGACTACATAGAAATGCAGATCCAGTTCAATCACAACCTCAGGAGAGCTCTGGGGATTCACAGATGTTTTTTAATCTTCCGCATTTGGACTCGTTTACGACCTCTGACTTGGCATTTTTTAAGAGTATTTAA
Protein Sequence MQPSSTSTSHYIQVPQKIQHKIAKKKITRRRRIDLDCGCSYYLSLNCHGCGFSHRGVHHCNSGAEWRLYLDGPKSPLFQGAEAQNQIVQQQLGLHRNADPVQSQPQESSGDSQMFFNLPHLDSFTTSDLAFFKSI

NCBI Accession YP_003254633.1
Location 1551-2600
Protein Name C1
Coding Region ATGCCACGTCATCCTTCTTTCTGTGTTAATGCTAAGAATATATTTCTCACATATCCCCAGTGTAGTCTGTCTAAAGAAACTGTTCTGGAGAAGACCCTAGGCATTTCATGCCCTTCCGAGAAACTCTTCGTTAGGGTTTCACAGGAAAAACACCAAGATGGGTCTCTGCACATCCATGCTTTGGTCCAATTCAAAGGTAAAGCCAAGTTTAGAAATGCAAGACATTTCGACATATCCCATCCTAATTCTAGCAGATCATTCCACCCCAATTTTCAGGGAGCAAGATCTTCGTCCGATATCAAGTCGTACATTCAGAAGGACGGCGATTACCTCGACTGGGGTTGTTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGGCAGCAAACGATGTTGTGGCAGCTGCTTTAAATGCTGCTTCCAAAGGGGAAGCTTTGAACATCATTAGAGAGAAACTTCCCAGAGACTTTCTATTTCAATTTCATAATTTAAATGCAAATCTAGATAAACTCTTTAAACCACAACAACAAATTTATGTCACTCCATTTAGTCGAGATTCATTTGATAATGTTCCTCATATATTGGAACAGTGGGCAAAAGAAAATGTTGTTGACGCCGCTGCGCGGCCATGGAGGCCCATAAGTATTGTGATTGAAGGTGCTTCTAGAACTGGTAAAACCATGTGGGCAAGATCTCTTGGTAGGCATAATTACTTGTGCGGCCATCTTGATCTTAGTCCAAAGGTGTATTGCAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTACCTAAAACACTTTAAAGAGTTCATGGGGGCCCAGAGGGATTGGCAAAGCAACACAAAGTACGGAAAGCCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCATCTTCTTCATATAAAGAATATCTGGAAGAAGAAAAAAATAAAGCACTAAAAGACTGGGCTACAAAAAATGCAACCTTCATCTACCTCAACGAGCCATTATATACAAGTACCACAGAAAATTCAACATAA
Protein Sequence MPRHPSFCVNAKNIFLTYPQCSLSKETVLEKTLGISCPSEKLFVRVSQEKHQDGSLHIHALVQFKGKAKFRNARHFDISHPNSSRSFHPNFQGARSSSDIKSYIQKDGDYLDWGCFQIDGRSARGGQQAANDVVAAALNAASKGEALNIIREKLPRDFLFQFHNLNANLDKLFKPQQQIYVTPFSRDSFDNVPHILEQWAKENVVDAAARPWRPISIVIEGASRTGKTMWARSLGRHNYLCGHLDLSPKVYCNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEYLEEEKNKALKDWATKNATFIYLNEPLYTSTTENST

NCBI Accession YP_003254634.1
Location 2186-2443
Protein Name C4
Coding Region ATGGGTCTCTGCACATCCATGCTTTGGTCCAATTCAAAGGTAAAGCCAAGTTTAGAAATGCAAGACATTTCGACATATCCCATCCTAATTCTAGCAGATCATTCCACCCCAATTTTCAGGGAGCAAGATCTTCGTCCGATATCAAGTCGTACATTCAGAAGGACGGCGATTACCTCGACTGGGGTTGTTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGGCAGCAAACGATGTTGTGGCAGCTGCTTTAA
Protein Sequence MGLCTSMLWSNSKVKPSLEMQDISTYPILILADHSTPIFREQDLRPISSRTFRRTAITSTGVVFRSMEDLLEEVNRQQTMLWQLL

References More References in PubMed

1

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022
2

Ty-2 and Ty-3a Conferred Resistance are Insufficient Against Tomato Yellow Leaf Curl Kanchanaburi Virus from Southeast Asia in Single or Mixed Infections of Tomato.

Koeda S, et al.  Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12.

PMID: 33044916
3

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
4

Complete Genome Sequence of Tomato Leaf Curl New Delhi Virus from Luffa in Indonesia.

Wilisiani F, et al.  Microbiol Resour Announc. 2019 Apr 11;8(15):e01605-18. doi: 10.1128/MRA.01605-18.

PMID: 30975814
5

Tomato yellow leaf curl viruses: ménage à trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
6

Complete Genome Sequence of a Pepper Yellow Leaf Curl Indonesia Virus Isolated from Tomato in Bali, Indonesia.

Neriya Y, et al.  Microbiol Resour Announc. 2020 Jun 18;9(25):e00486-20. doi: 10.1128/MRA.00486-20.

PMID: 32554790
7

Identification of a New Begomovirus Associated with Yellow Leaf Curl Diseases of Tomato and Pepper in Sulawesi, Indonesia.

Tsai WS, et al.  Plant Dis. 2009 Mar;93(3):321. doi: 10.1094/PDIS-93-3-0321C.

PMID: 30764201
8

Molecular Characterization of Pepper yellow leaf curl Indonesia virus in Leaf Curl and Yellowing Diseased Tomato and Pepper in Indonesia.

Tsai WS, et al.  Plant Dis. 2006 Feb;90(2):247. doi: 10.1094/PD-90-0247B.

PMID: 30786428
9

Strains of a new bipartite begomovirus, pepper yellow leaf curl Indonesia virus, in leaf-curl-diseased tomato and yellow-vein-diseased ageratum in Indonesia.

Sakata JJ, et al.  Arch Virol. 2008;153(12):2307-13. doi: 10.1007/s00705-008-0254-z. Epub 2008 Nov 18.

PMID: 19015934
10

First Report of Tomato leaf curl New Delhi virus Infecting Cucumber in Central Java, Indonesia.

Mizutani T, et al.  Plant Dis. 2011 Nov;95(11):1485. doi: 10.1094/PDIS-03-11-0196.

PMID: 30731770