Tomato leaf curl Sulawesi virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000886855.1
Isolate Indonesia:Tompaso, North Sulawesi
Release date 2015/2/22
Submitter Tsai,W.S., Shih,S.L., Green,S.K., Lee,L.M., Luther,G.C., Ratulangi,M., Sembel,D.T., Jan,F.-J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_013413
ACCGAGGGCCGCGAAATTTTTTTCCGTACTGTGGTCCACGTTGACTGGCCAATCACATTTGAGCTTCAAAGCTTAGATAGTGCGTACCGCACTATAAAACTTGGGGGCCACGAAATAATGGCAAACATGTGGGATCCTCTAATTCATCCCTTTCCTGACACTCTGCACGGATTTCGATGTATGCTGGCAATAAAGTACTTACAATCCTTCGAGTGTAAGTATTCTCCGGATACTGTTGGGCGTGAATTTATCAGGGATCTTATTTGCATTTTGAGGTGCAAAAACTATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGATGTTCCTCGTGGCTGTGAAGGACCTTGTAAGGTCCAGTCGTATGAACAGAGACATGATATCTCTCATGTCGGTAAGGTATTGTGTGTCAGTGATGTAACTAGGGGAGGTGGTATAACTCATAGGGTAGGTAAACGTTTTTGTGTTAAGTCTGTTTACATACTAGGTAAAGTGTGGATGGATGAGAATATCAAAACCAAAAACCATACGAACAACTGTACGTTCTGGTTAGTTAGGGATAGGAGGCCTTATGGCACTCCGCAAGACTTTGGTCAGGTTTTTAATATGTATGATAACGAACCAAGTACCGCTACCGTGAAGAATGACCTGCGTGATCGATTCCAAGTGCTTCATCGATTTTCAGCTATGGTTACCGGTGGTCAATATGCTAGCAAGGAGCAAGCAATCGTGAAGAAGTTCTACAAGGTGAACAACTACGTCGTCTATAATCATCAGGAAGCTGCTAAATATGAAAATCACACGGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACATTGAAGATACGCATATATTTCTATGACAATGTAACAAATTAATATAAATTGAATTTTATTATATGAAGCATGTCTACATACATGGTCTCCTCTATTACATTCCATAAGACATGATTAACTGCTCTAATAACATTATTTACTGATACAACACCCAAACTATTCAGAAATTTACATACATGATATTTAAATACTCTTAAAAAATGCCAAGTCAGAGGTCGTAAACGAGTCCAAATGCGGAAGATTAAAAAACATCTGTGAATCCCCAGAGCTCTCCTGAGGTTGTGATTGAACTGGATCTGCATTTCTATGTAGTCCCAGTTGTTGTTGAACGATCTGGTTTTGTGCTTCAGCACCTTGAAATAGAGGGGATTTGGGACCATCCAAGTATAAACGCCACTCTGCGCCTGAGTTGCAGTGATGTACTCCCCTGTGCGAAAATCCACAACCATGACAGTTAAGGCTGAGATAGTATGAGCATCCACAATCTAAATCAATGCGTCTTCGCCTTGTGATTTTCTTTTTTGCAATTTTATGTTGAATTTTCTGTGGTACTTGTATATAATGGCTCGTTGAGGTAGATGAAGGTTGCATTTTTTGTAGCCCAGTCTTTTAGTGCTTTATTTTTTTCTTCTTCCAGATATTCTTTATATGAAGAAGATGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTACTTTGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGGTAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCAATACACCTTTGGACTAAGATCAAGATGGCCGCACAAGTAATTATGCCTACCAAGAGATCTTGCCCACATGGTTTTACCAGTTCTAGAAGCACCTTCAATCACAATACTTATGGGCCTCCATGGCCGCGCAGCGGCGTCAACAACATTTTCTTTTGCCCACTGTTCCAATATATGAGGAACATTATCAAATGAATCTCGACTAAATGGAGTGACATAAATTTGTTGTTGTGGTTTAAAGAGTTTATCTAGATTTGCATTTAAATTATGAAATTGAAATAGAAAGTCTCTGGGAAGTTTCTCTCTAATGATGTTCAAAGCTTCCCCTTTGGAAGCAGCATTTAAAGCAGCTGCCACAACATCGTTTGCTGCCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAAACAACCCCAGTCGAGGTAATCGCCGTCCTTCTGAATGTACGACTTGATATCGGACGAAGATCTTGCTCCCTGAAAATTGGGGTGGAATGATCTGCTAGAATTAGGATGGGATATGTCGAAATGTCTTGCATTTCTAAACTTGGCTTTACCTTTGAATTGGACCAAAGCATGGATGTGCAGAGACCCATCTTGGTGTTTTTCCTGTGAAACCCTAACGAAGAGTTTCTCGGAAGGGCATGAAATGCCTAGGGTCTTCTCCAGAACAGTTTCTTTAGACAGACTACACTGGGGATATGTGAGAAATATATTCTTAGCATTAACACAGAAAGAAGGATGACGTGGCATGGCTATTGGAGACTTCACTAACTCTATACACTGGGGGACAATGGAGACTCATATATACTAGAGTCCCTTAATGGCATAATGGTAATTAGACAGAGTTACTTTAATTTGAAATTTAAATTTTTTTTCCCAAAAGCGGCCCTCGTATAATATT

Gene Information

NCBI Accession YP_003254629.1
Location 118-480
Protein Name V2
Coding Region ATGGCAAACATGTGGGATCCTCTAATTCATCCCTTTCCTGACACTCTGCACGGATTTCGATGTATGCTGGCAATAAAGTACTTACAATCCTTCGAGTGTAAGTATTCTCCGGATACTGTTGGGCGTGAATTTATCAGGGATCTTATTTGCATTTTGAGGTGCAAAAACTATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGA
Protein Sequence MANMWDPLIHPFPDTLHGFRCMLAIKYLQSFECKYSPDTVGREFIRDLICILRCKNYAEAFHRYSVVTANVYNTPEAKLRESVQSPCSCPHCPRHVIQKTCLDRSSNVSETQILPCQKEQ

NCBI Accession YP_003254630.1
Location 287-1063
Protein Name V1
Coding Region ATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGATGTTCCTCGTGGCTGTGAAGGACCTTGTAAGGTCCAGTCGTATGAACAGAGACATGATATCTCTCATGTCGGTAAGGTATTGTGTGTCAGTGATGTAACTAGGGGAGGTGGTATAACTCATAGGGTAGGTAAACGTTTTTGTGTTAAGTCTGTTTACATACTAGGTAAAGTGTGGATGGATGAGAATATCAAAACCAAAAACCATACGAACAACTGTACGTTCTGGTTAGTTAGGGATAGGAGGCCTTATGGCACTCCGCAAGACTTTGGTCAGGTTTTTAATATGTATGATAACGAACCAAGTACCGCTACCGTGAAGAATGACCTGCGTGATCGATTCCAAGTGCTTCATCGATTTTCAGCTATGGTTACCGGTGGTCAATATGCTAGCAAGGAGCAAGCAATCGTGAAGAAGTTCTACAAGGTGAACAACTACGTCGTCTATAATCATCAGGAAGCTGCTAAATATGAAAATCACACGGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACATTGAAGATACGCATATATTTCTATGACAATGTAACAAATTAA
Protein Sequence MPKRSIDTVSSLPMSITRRRLNYGSQFSLPAAVPTAPGMSYKRRAWTGRPMYRKPRFYRARRSSDVPRGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGGGITHRVGKRFCVKSVYILGKVWMDENIKTKNHTNNCTFWLVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDLRDRFQVLHRFSAMVTGGQYASKEQAIVKKFYKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN

NCBI Accession YP_003254631.1
Location 1060-1470
Protein Name C3
Coding Region ATGGTTGTGGATTTTCGCACAGGGGAGTACATCACTGCAACTCAGGCGCAGAGTGGCGTTTATACTTGGATGGTCCCAAATCCCCTCTATTTCAAGGTGCTGAAGCACAAAACCAGATCGTTCAACAACAACTGGGACTACATAGAAATGCAGATCCAGTTCAATCACAACCTCAGGAGAGCTCTGGGGATTCACAGATGTTTTTTAATCTTCCGCATTTGGACTCGTTTACGACCTCTGACTTGGCATTTTTTAAGAGTATTTAAATATCATGTATGTAAATTTCTGAATAGTTTGGGTGTTGTATCAGTAAATAATGTTATTAGAGCAGTTAATCATGTCTTATGGAATGTAATAGAGGAGACCATGTATGTAGACATGCTTCATATAATAAAATTCAATTTATATTAA
Protein Sequence MVVDFRTGEYITATQAQSGVYTWMVPNPLYFKVLKHKTRSFNNNWDYIEMQIQFNHNLRRALGIHRCFLIFRIWTRLRPLTWHFLRVFKYHVCKFLNSLGVVSVNNVIRAVNHVLWNVIEETMYVDMLHIIKFNLY

NCBI Accession YP_003254632.1
Location 1205-1612
Protein Name C2
Coding Region ATGCAACCTTCATCTACCTCAACGAGCCATTATATACAAGTACCACAGAAAATTCAACATAAAATTGCAAAAAAGAAAATCACAAGGCGAAGACGCATTGATTTAGATTGTGGATGCTCATACTATCTCAGCCTTAACTGTCATGGTTGTGGATTTTCGCACAGGGGAGTACATCACTGCAACTCAGGCGCAGAGTGGCGTTTATACTTGGATGGTCCCAAATCCCCTCTATTTCAAGGTGCTGAAGCACAAAACCAGATCGTTCAACAACAACTGGGACTACATAGAAATGCAGATCCAGTTCAATCACAACCTCAGGAGAGCTCTGGGGATTCACAGATGTTTTTTAATCTTCCGCATTTGGACTCGTTTACGACCTCTGACTTGGCATTTTTTAAGAGTATTTAA
Protein Sequence MQPSSTSTSHYIQVPQKIQHKIAKKKITRRRRIDLDCGCSYYLSLNCHGCGFSHRGVHHCNSGAEWRLYLDGPKSPLFQGAEAQNQIVQQQLGLHRNADPVQSQPQESSGDSQMFFNLPHLDSFTTSDLAFFKSI

NCBI Accession YP_003254633.1
Location 1551-2600
Protein Name C1
Coding Region ATGCCACGTCATCCTTCTTTCTGTGTTAATGCTAAGAATATATTTCTCACATATCCCCAGTGTAGTCTGTCTAAAGAAACTGTTCTGGAGAAGACCCTAGGCATTTCATGCCCTTCCGAGAAACTCTTCGTTAGGGTTTCACAGGAAAAACACCAAGATGGGTCTCTGCACATCCATGCTTTGGTCCAATTCAAAGGTAAAGCCAAGTTTAGAAATGCAAGACATTTCGACATATCCCATCCTAATTCTAGCAGATCATTCCACCCCAATTTTCAGGGAGCAAGATCTTCGTCCGATATCAAGTCGTACATTCAGAAGGACGGCGATTACCTCGACTGGGGTTGTTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGGCAGCAAACGATGTTGTGGCAGCTGCTTTAAATGCTGCTTCCAAAGGGGAAGCTTTGAACATCATTAGAGAGAAACTTCCCAGAGACTTTCTATTTCAATTTCATAATTTAAATGCAAATCTAGATAAACTCTTTAAACCACAACAACAAATTTATGTCACTCCATTTAGTCGAGATTCATTTGATAATGTTCCTCATATATTGGAACAGTGGGCAAAAGAAAATGTTGTTGACGCCGCTGCGCGGCCATGGAGGCCCATAAGTATTGTGATTGAAGGTGCTTCTAGAACTGGTAAAACCATGTGGGCAAGATCTCTTGGTAGGCATAATTACTTGTGCGGCCATCTTGATCTTAGTCCAAAGGTGTATTGCAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTACCTAAAACACTTTAAAGAGTTCATGGGGGCCCAGAGGGATTGGCAAAGCAACACAAAGTACGGAAAGCCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCATCTTCTTCATATAAAGAATATCTGGAAGAAGAAAAAAATAAAGCACTAAAAGACTGGGCTACAAAAAATGCAACCTTCATCTACCTCAACGAGCCATTATATACAAGTACCACAGAAAATTCAACATAA
Protein Sequence MPRHPSFCVNAKNIFLTYPQCSLSKETVLEKTLGISCPSEKLFVRVSQEKHQDGSLHIHALVQFKGKAKFRNARHFDISHPNSSRSFHPNFQGARSSSDIKSYIQKDGDYLDWGCFQIDGRSARGGQQAANDVVAAALNAASKGEALNIIREKLPRDFLFQFHNLNANLDKLFKPQQQIYVTPFSRDSFDNVPHILEQWAKENVVDAAARPWRPISIVIEGASRTGKTMWARSLGRHNYLCGHLDLSPKVYCNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEYLEEEKNKALKDWATKNATFIYLNEPLYTSTTENST

NCBI Accession YP_003254634.1
Location 2186-2443
Protein Name C4
Coding Region ATGGGTCTCTGCACATCCATGCTTTGGTCCAATTCAAAGGTAAAGCCAAGTTTAGAAATGCAAGACATTTCGACATATCCCATCCTAATTCTAGCAGATCATTCCACCCCAATTTTCAGGGAGCAAGATCTTCGTCCGATATCAAGTCGTACATTCAGAAGGACGGCGATTACCTCGACTGGGGTTGTTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGGCAGCAAACGATGTTGTGGCAGCTGCTTTAA
Protein Sequence MGLCTSMLWSNSKVKPSLEMQDISTYPILILADHSTPIFREQDLRPISSRTFRRTAITSTGVVFRSMEDLLEEVNRQQTMLWQLL

References More References in PubMed

1

Tomato yellow leaf curl viruses: menage a trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
2

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
3

Ty-2 and Ty-3a Conferred Resistance are Insufficient Against Tomato Yellow Leaf Curl Kanchanaburi Virus from Southeast Asia in Single or Mixed Infections of Tomato.

Koeda S, et al.  Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12.

PMID: 33044916
4

Identification of a New Begomovirus Associated with Yellow Leaf Curl Diseases of Tomato and Pepper in Sulawesi, Indonesia.

Tsai WS, et al.  Plant Dis. 2009 Mar;93(3):321. doi: 10.1094/PDIS-93-3-0321C.

PMID: 30764201
5

Strains of a new bipartite begomovirus, pepper yellow leaf curl Indonesia virus, in leaf-curl-diseased tomato and yellow-vein-diseased ageratum in Indonesia.

Sakata JJ, et al.  Arch Virol. 2008;153(12):2307-13. doi: 10.1007/s00705-008-0254-z. Epub 2008 Nov 18.

PMID: 19015934
6

Complete Genome Sequence of Tomato Leaf Curl New Delhi Virus from Luffa in Indonesia.

Wilisiani F, et al.  Microbiol Resour Announc. 2019 Apr 11;8(15):e01605-18. doi: 10.1128/MRA.01605-18.

PMID: 30975814
7

Molecular Characterization of Pepper yellow leaf curl Indonesia virus in Leaf Curl and Yellowing Diseased Tomato and Pepper in Indonesia.

Tsai WS, et al.  Plant Dis. 2006 Feb;90(2):247. doi: 10.1094/PD-90-0247B.

PMID: 30786428
8

Suppressor of RNA silencing encoded by the monopartite tomato leaf curl Java begomovirus.

Kon T, et al.  Arch Virol. 2007;152(7):1273-82. doi: 10.1007/s00705-007-0957-6. Epub 2007 Mar 26.

PMID: 17385070
9

Complete Genome Sequence of a Pepper Yellow Leaf Curl Indonesia Virus Isolated from Tomato in Bali, Indonesia.

Neriya Y, et al.  Microbiol Resour Announc. 2020 Jun 18;9(25):e00486-20. doi: 10.1128/MRA.00486-20.

PMID: 32554790
10

Molecular Characterization of a Distinct Tomato-Infecting Begomovirus Associated with Yellow Leaf Curl Diseased Tomato in Lembang, Java Island of Indonesia.

Tsai WS, et al.  Plant Dis. 2006 Jun;90(6):831. doi: 10.1094/PD-90-0831B.

PMID: 30781263