Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000886855.1 |
Isolate | Indonesia:Tompaso, North Sulawesi |
Release date | 2015/2/22 |
Submitter | Tsai,W.S., Shih,S.L., Green,S.K., Lee,L.M., Luther,G.C., Ratulangi,M., Sembel,D.T., Jan,F.-J. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_003254629.1 |
---|---|
Location | 118-480 |
Protein Name | V2 |
Coding Region | ATGGCAAACATGTGGGATCCTCTAATTCATCCCTTTCCTGACACTCTGCACGGATTTCGATGTATGCTGGCAATAAAGTACTTACAATCCTTCGAGTGTAAGTATTCTCCGGATACTGTTGGGCGTGAATTTATCAGGGATCTTATTTGCATTTTGAGGTGCAAAAACTATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGA |
Protein Sequence | MANMWDPLIHPFPDTLHGFRCMLAIKYLQSFECKYSPDTVGREFIRDLICILRCKNYAEAFHRYSVVTANVYNTPEAKLRESVQSPCSCPHCPRHVIQKTCLDRSSNVSETQILPCQKEQ |
NCBI Accession | YP_003254630.1 |
---|---|
Location | 287-1063 |
Protein Name | V1 |
Coding Region | ATGCCGAAGCGTTCCATAGATACAGTGTCGTCACTGCCAATGTCTATAACACGCCGGAGGCTAAATTACGGGAGTCAGTTCAGTCTCCCTGCAGCTGTCCCCACTGCCCCAGGCATGTCATACAAAAGACGTGCTTGGACAGGTCGTCCAATGTATCGGAAACCCAGATTTTACCGTGCCAGAAGGAGCAGTGATGTTCCTCGTGGCTGTGAAGGACCTTGTAAGGTCCAGTCGTATGAACAGAGACATGATATCTCTCATGTCGGTAAGGTATTGTGTGTCAGTGATGTAACTAGGGGAGGTGGTATAACTCATAGGGTAGGTAAACGTTTTTGTGTTAAGTCTGTTTACATACTAGGTAAAGTGTGGATGGATGAGAATATCAAAACCAAAAACCATACGAACAACTGTACGTTCTGGTTAGTTAGGGATAGGAGGCCTTATGGCACTCCGCAAGACTTTGGTCAGGTTTTTAATATGTATGATAACGAACCAAGTACCGCTACCGTGAAGAATGACCTGCGTGATCGATTCCAAGTGCTTCATCGATTTTCAGCTATGGTTACCGGTGGTCAATATGCTAGCAAGGAGCAAGCAATCGTGAAGAAGTTCTACAAGGTGAACAACTACGTCGTCTATAATCATCAGGAAGCTGCTAAATATGAAAATCACACGGAGAATGCTTTGTTATTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACATTGAAGATACGCATATATTTCTATGACAATGTAACAAATTAA |
Protein Sequence | MPKRSIDTVSSLPMSITRRRLNYGSQFSLPAAVPTAPGMSYKRRAWTGRPMYRKPRFYRARRSSDVPRGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGGGITHRVGKRFCVKSVYILGKVWMDENIKTKNHTNNCTFWLVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDLRDRFQVLHRFSAMVTGGQYASKEQAIVKKFYKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDNVTN |
NCBI Accession | YP_003254631.1 |
---|---|
Location | 1060-1470 |
Protein Name | C3 |
Coding Region | ATGGTTGTGGATTTTCGCACAGGGGAGTACATCACTGCAACTCAGGCGCAGAGTGGCGTTTATACTTGGATGGTCCCAAATCCCCTCTATTTCAAGGTGCTGAAGCACAAAACCAGATCGTTCAACAACAACTGGGACTACATAGAAATGCAGATCCAGTTCAATCACAACCTCAGGAGAGCTCTGGGGATTCACAGATGTTTTTTAATCTTCCGCATTTGGACTCGTTTACGACCTCTGACTTGGCATTTTTTAAGAGTATTTAAATATCATGTATGTAAATTTCTGAATAGTTTGGGTGTTGTATCAGTAAATAATGTTATTAGAGCAGTTAATCATGTCTTATGGAATGTAATAGAGGAGACCATGTATGTAGACATGCTTCATATAATAAAATTCAATTTATATTAA |
Protein Sequence | MVVDFRTGEYITATQAQSGVYTWMVPNPLYFKVLKHKTRSFNNNWDYIEMQIQFNHNLRRALGIHRCFLIFRIWTRLRPLTWHFLRVFKYHVCKFLNSLGVVSVNNVIRAVNHVLWNVIEETMYVDMLHIIKFNLY |
NCBI Accession | YP_003254632.1 |
---|---|
Location | 1205-1612 |
Protein Name | C2 |
Coding Region | ATGCAACCTTCATCTACCTCAACGAGCCATTATATACAAGTACCACAGAAAATTCAACATAAAATTGCAAAAAAGAAAATCACAAGGCGAAGACGCATTGATTTAGATTGTGGATGCTCATACTATCTCAGCCTTAACTGTCATGGTTGTGGATTTTCGCACAGGGGAGTACATCACTGCAACTCAGGCGCAGAGTGGCGTTTATACTTGGATGGTCCCAAATCCCCTCTATTTCAAGGTGCTGAAGCACAAAACCAGATCGTTCAACAACAACTGGGACTACATAGAAATGCAGATCCAGTTCAATCACAACCTCAGGAGAGCTCTGGGGATTCACAGATGTTTTTTAATCTTCCGCATTTGGACTCGTTTACGACCTCTGACTTGGCATTTTTTAAGAGTATTTAA |
Protein Sequence | MQPSSTSTSHYIQVPQKIQHKIAKKKITRRRRIDLDCGCSYYLSLNCHGCGFSHRGVHHCNSGAEWRLYLDGPKSPLFQGAEAQNQIVQQQLGLHRNADPVQSQPQESSGDSQMFFNLPHLDSFTTSDLAFFKSI |
NCBI Accession | YP_003254633.1 |
---|---|
Location | 1551-2600 |
Protein Name | C1 |
Coding Region | ATGCCACGTCATCCTTCTTTCTGTGTTAATGCTAAGAATATATTTCTCACATATCCCCAGTGTAGTCTGTCTAAAGAAACTGTTCTGGAGAAGACCCTAGGCATTTCATGCCCTTCCGAGAAACTCTTCGTTAGGGTTTCACAGGAAAAACACCAAGATGGGTCTCTGCACATCCATGCTTTGGTCCAATTCAAAGGTAAAGCCAAGTTTAGAAATGCAAGACATTTCGACATATCCCATCCTAATTCTAGCAGATCATTCCACCCCAATTTTCAGGGAGCAAGATCTTCGTCCGATATCAAGTCGTACATTCAGAAGGACGGCGATTACCTCGACTGGGGTTGTTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGGCAGCAAACGATGTTGTGGCAGCTGCTTTAAATGCTGCTTCCAAAGGGGAAGCTTTGAACATCATTAGAGAGAAACTTCCCAGAGACTTTCTATTTCAATTTCATAATTTAAATGCAAATCTAGATAAACTCTTTAAACCACAACAACAAATTTATGTCACTCCATTTAGTCGAGATTCATTTGATAATGTTCCTCATATATTGGAACAGTGGGCAAAAGAAAATGTTGTTGACGCCGCTGCGCGGCCATGGAGGCCCATAAGTATTGTGATTGAAGGTGCTTCTAGAACTGGTAAAACCATGTGGGCAAGATCTCTTGGTAGGCATAATTACTTGTGCGGCCATCTTGATCTTAGTCCAAAGGTGTATTGCAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCGCATTACCTAAAACACTTTAAAGAGTTCATGGGGGCCCAGAGGGATTGGCAAAGCAACACAAAGTACGGAAAGCCAATTCAAATTAAAGGTGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCATCTTCTTCATATAAAGAATATCTGGAAGAAGAAAAAAATAAAGCACTAAAAGACTGGGCTACAAAAAATGCAACCTTCATCTACCTCAACGAGCCATTATATACAAGTACCACAGAAAATTCAACATAA |
Protein Sequence | MPRHPSFCVNAKNIFLTYPQCSLSKETVLEKTLGISCPSEKLFVRVSQEKHQDGSLHIHALVQFKGKAKFRNARHFDISHPNSSRSFHPNFQGARSSSDIKSYIQKDGDYLDWGCFQIDGRSARGGQQAANDVVAAALNAASKGEALNIIREKLPRDFLFQFHNLNANLDKLFKPQQQIYVTPFSRDSFDNVPHILEQWAKENVVDAAARPWRPISIVIEGASRTGKTMWARSLGRHNYLCGHLDLSPKVYCNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEYLEEEKNKALKDWATKNATFIYLNEPLYTSTTENST |
NCBI Accession | YP_003254634.1 |
---|---|
Location | 2186-2443 |
Protein Name | C4 |
Coding Region | ATGGGTCTCTGCACATCCATGCTTTGGTCCAATTCAAAGGTAAAGCCAAGTTTAGAAATGCAAGACATTTCGACATATCCCATCCTAATTCTAGCAGATCATTCCACCCCAATTTTCAGGGAGCAAGATCTTCGTCCGATATCAAGTCGTACATTCAGAAGGACGGCGATTACCTCGACTGGGGTTGTTTTCAGATCGATGGAAGATCTGCTAGAGGAGGTCAACAGGCAGCAAACGATGTTGTGGCAGCTGCTTTAA |
Protein Sequence | MGLCTSMLWSNSKVKPSLEMQDISTYPILILADHSTPIFREQDLRPISSRTFRRTAITSTGVVFRSMEDLLEEVNRQQTMLWQLL |
1 |
Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China. Li R, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print. PMID: 36281022 |
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2 |
Koeda S, et al. Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12. PMID: 33044916 |
3 |
Kesumawati E, et al. Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15. PMID: 31203434 |
4 |
Complete Genome Sequence of Tomato Leaf Curl New Delhi Virus from Luffa in Indonesia. Wilisiani F, et al. Microbiol Resour Announc. 2019 Apr 11;8(15):e01605-18. doi: 10.1128/MRA.01605-18. PMID: 30975814 |
5 |
Díaz-Pendón JA, et al. Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x. PMID: 20618703 |
6 |
Neriya Y, et al. Microbiol Resour Announc. 2020 Jun 18;9(25):e00486-20. doi: 10.1128/MRA.00486-20. PMID: 32554790 |
7 |
Tsai WS, et al. Plant Dis. 2009 Mar;93(3):321. doi: 10.1094/PDIS-93-3-0321C. PMID: 30764201 |
8 |
Tsai WS, et al. Plant Dis. 2006 Feb;90(2):247. doi: 10.1094/PD-90-0247B. PMID: 30786428 |
9 |
Sakata JJ, et al. Arch Virol. 2008;153(12):2307-13. doi: 10.1007/s00705-008-0254-z. Epub 2008 Nov 18. PMID: 19015934 |
10 |
First Report of Tomato leaf curl New Delhi virus Infecting Cucumber in Central Java, Indonesia. Mizutani T, et al. Plant Dis. 2011 Nov;95(11):1485. doi: 10.1094/PDIS-03-11-0196. PMID: 30731770 |