Tomato leaf curl Sudan virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000842665.1 |
| Release date | 2015/2/12 |
| Submitter | Idris,A.M., Brown,J.K. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_005855
Gene Information
| NCBI Accession | YP_006465.1 |
|---|---|
| Location | 135-485 |
| Gene Name | V2 |
| Protein Name | precoat protein |
| Coding Region | ATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCATGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGATTATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGA |
| Protein Sequence | MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYSHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVSKAQNIQNVSKS |
| NCBI Accession | YP_006466.1 |
|---|---|
| Location | 295-1068 |
| Gene Name | V1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCGTTTGACAAGCGCCATGATTTGAAGCATACGGGTGAGGTATTGTGTGTTTCAGATGTAACACGTGGTAATGGCCTTACTCATCGTGTTGGGAAACGTTTTTGTATCAAGTCTATTTACATTGTTGGCAAAGTGTGGATGGATGAGAACATTAAGGTGAAGAATCATACTAACACTTGTATGTTCTGGCTTGTTCGGGATCGTCGTCCAGTTACTACTCCCTATGGATTTGGAGAATTGTTTAACATGTATGATAATGAGCCATCTACTGCCACTATTAAGAATGATCTGCGGGATCGTTGTCAGGTTCTTAAGAGGTTCACTGCTAGTTTGAGTGGTGGTCAATATGCGTCCAAAGAGCAATGTGTCATTAGGCGATTTTATAAGATTTATAACCATATTGTTTATAATCATCAAGAGCAGGGGAAATATGAGAATCATACTGAGAACGCTCTTTTACTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTACGCTACTCTTAAAATAAGGGTGTACTTCTACGATTCAATATCGAATTAA |
| Protein Sequence | MSKRPGDIVISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTHRVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNEPSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSISN |
| NCBI Accession | YP_006467.1 |
|---|---|
| Location | 1065-1469 |
| Gene Name | C3 |
| Protein Name | replication enhancer |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCTCATCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAACGAGAGGCCATTTCTAATGAACCACGACATCATTTCCATGCAGATAAGATTCAGCCACAATATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGATATCAAGTTCTTAGATATTTAAATAATATTGGTGTAATTTCCATTAACAATGTAATTAGAGCAGTTGATCATGTATTGTATAATGTACTTGAAAACACAATAAATGTAACCGAGATTCACGATATAAAATATAAATTTTATTAA |
| Protein Sequence | MDSRTGELITAHQAENGVFIWEINNPLYFKITEHNERPFLMNHDIISMQIRFSHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLRYLNNIGVISINNVIRAVDHVLYNVLENTINVTEIHDIKYKFY |
| NCBI Accession | YP_006468.1 |
|---|---|
| Location | 1210-1617 |
| Gene Name | C2 |
| Protein Name | transactivation protein |
| Coding Region | ATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCTCCAGTACCAATCAAGGACCAACACAAAATAGCCAAGAAACAACCAATCAGGCGTAAGCGTGTAGACCTAGATTGTGGCTGCTCATACTACCTCCACATCAACTGCATCAACTATGGATTCACGCACAGGGGAACTCATCACTGCTCATCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAACGAGAGGCCATTTCTAATGAACCACGACATCATTTCCATGCAGATAAGATTCAGCCACAATATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
| Protein Sequence | MQPSSPSTSHCSPVPIKDQHKIAKKQPIRRKRVDLDCGCSYYLHINCINYGFTHRGTHHCSSSREWRFYLGDKQSPIFQDNRTQREAISNEPRHHFHADKIQPQYQEGTGDSQMFSQLPNLDDLTASDWSFLKSI |
| NCBI Accession | YP_006469.1 |
|---|---|
| Location | 1526-2605 |
| Gene Name | C1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGGCTCCCCCAAAGCGTTTTAAAATAAATGCCAAAAATTATTTCCTTACTTATCCCCAGTGTTCTCTTTCTTTATCCGAAGCACTTTCCCAACTACAAACCCTCGAAACTCCTGTAAATAAATTATACATTAAAATTTGCAGAGAGCTCCACGAGAATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGCAAGTACCAGTGCACGAATAACAGATTCTTCGACCTGGCATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCATCTGATGTCAAGTCCTACATCGATAAAGACGGAGACACCATCGATTGGGGTGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAATCAGCCAATGACGCTTACGCAGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAGCACCGAAAGATTATATTTTACAGTTTCATAATTTAAATTCTAATTTAGATAGAATTTTTCAGGAGCCTCCGGCTCCTTATATCTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCAGAGGAACTTGAAGTATGGGTGTCCGAGAACGTCATGTCTTCCGCTGCGCGGCCATGGAGACCTAACAGTATTATCATCGAGGGTGATAGCAGAACAGGCAAAACAATGTGGGCTAGGTCTCTAGGCCCACATAACTATTTATGTGGACATCTAGACCTAAGTCCAAAGGTGTACAGTAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTATGGGAAGCCCATTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACCTCCTCATATAAGGAATATCTAGACGAAGAAAAAAATATTTCCTTGAAAAATTGGGCTCTCAAGAATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCTCCAGTACCAATCAAGGACCAACACAAAATAGCCAAGAAACAACCAATCAGGCGTAA |
| Protein Sequence | MAPPKRFKINAKNYFLTYPQCSLSLSEALSQLQTLETPVNKLYIKICRELHENGEPHLHALVQFEGKYQCTNNRFFDLASPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRIIKELAPKDYILQFHNLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNISLKNWALKNATFVTLYEPLFSSTNQGPTQNSQETTNQA |
| NCBI Accession | YP_006470.1 |
|---|---|
| Location | 2146-2448 |
| Gene Name | C4 |
| Protein Name | hypothetical protein |
| Coding Region | ATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGCAAGTACCAGTGCACGAATAACAGATTCTTCGACCTGGCATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCATCTGATGTCAAGTCCTACATCGATAAAGACGGAGACACCATCGATTGGGGTGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAATCAGCCAATGACGCTTACGCAGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAG |
| Protein Sequence | MGNLICMPLFSSKASTSARITDSSTWHPQVDQHISIQTFRELNPHLMSSPTSIKTETPSIGVSFRSMEDLQEEDNNQPMTLTQQHLTQAVSQRLLESLKN |
References More References in PubMed
| 1 |
Generation and Characterization of Nanobodies Against Tomato Leaf Curl Sudan Virus. Zakri AM, et al. Plant Dis. 2021 Sep;105(9):2410-2417. doi: 10.1094/PDIS-11-20-2407-RE. Epub 2021 Oct 19. PMID: 33599515 |
|---|---|
| 2 |
Sohrab SS, et al. Virusdisease. 2016 Jun;27(2):145-53. doi: 10.1007/s13337-016-0308-x. Epub 2016 Mar 4. PMID: 27366765 |
| 3 |
A Distinct Strain of Tomato leaf curl Sudan virus Causes Tomato Leaf Curl Disease in Oman. Khan AJ, et al. Plant Dis. 2013 Nov;97(11):1396-1402. doi: 10.1094/PDIS-02-13-0210-RE. PMID: 30708466 |
| 4 |
Fiallo-Olivé E, et al. Virus Res. 2013 Dec 26;178(2):506-10. doi: 10.1016/j.virusres.2013.10.006. Epub 2013 Oct 16. PMID: 24140627 |
| 5 |
Identification of Cotton leaf curl Gezira virus in Papaya in Oman. Khan AJ, et al. Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN. PMID: 30727467 |
| 6 |
Mohammed HS, et al. Arch Virol. 2018 Jan;163(1):273-275. doi: 10.1007/s00705-017-3574-z. Epub 2017 Oct 4. PMID: 28980080 |
| 7 |
Idris AM, et al. Plant Dis. 2001 Nov;85(11):1209. doi: 10.1094/PDIS.2001.85.11.1209A. PMID: 30823180 |
| 8 |
A Novel Strain of the Begomovirus Tomato Leaf Curl Sudan Virus Infecting Datura stramonium in Sudan. Mohammed HS, et al. Plant Dis. 2018 Sep;102(9):1863. doi: 10.1094/PDIS-01-18-0195-PDN. Epub 2018 Jul 6. PMID: 30125192 |
| 9 |
Idris AM, et al. Arch Virol. 2005 May;150(5):1003-12. doi: 10.1007/s00705-004-0484-7. Epub 2005 Feb 10. PMID: 15703848 |
| 10 |
Effect of Imidacloprid on Incidence of Tomato yellow leaf curl virus. Ahmed NE, et al. Plant Dis. 2001 Jan;85(1):84-87. doi: 10.1094/PDIS.2001.85.1.84. PMID: 30832077 |