Tomato leaf curl Sudan virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842665.1
Release date 2015/2/12
Submitter Idris,A.M., Brown,J.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_005855
ACCGGATGGCCGCGCCCCTCTTTTTAGTGGGTCCCACTCACGTCGCTATCAACCAATCAAAATGCATCCTCAAACGTTAGATAAGTGTTCATTTGTCCTTATATACTTGGTCCCCAAGTTGTTTGTCAAGCAATATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCATGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGATTATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCGTTTGACAAGCGCCATGATTTGAAGCATACGGGTGAGGTATTGTGTGTTTCAGATGTAACACGTGGTAATGGCCTTACTCATCGTGTTGGGAAACGTTTTTGTATCAAGTCTATTTACATTGTTGGCAAAGTGTGGATGGATGAGAACATTAAGGTGAAGAATCATACTAACACTTGTATGTTCTGGCTTGTTCGGGATCGTCGTCCAGTTACTACTCCCTATGGATTTGGAGAATTGTTTAACATGTATGATAATGAGCCATCTACTGCCACTATTAAGAATGATCTGCGGGATCGTTGTCAGGTTCTTAAGAGGTTCACTGCTAGTTTGAGTGGTGGTCAATATGCGTCCAAAGAGCAATGTGTCATTAGGCGATTTTATAAGATTTATAACCATATTGTTTATAATCATCAAGAGCAGGGGAAATATGAGAATCATACTGAGAACGCTCTTTTACTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTACGCTACTCTTAAAATAAGGGTGTACTTCTACGATTCAATATCGAATTAATAAAATTTATATTTTATATCGTGAATCTCGGTTACATTTATTGTGTTTTCAAGTACATTATACAATACATGATCAACTGCTCTAATTACATTGTTAATGGAAATTACACCAATATTATTTAAATATCTAAGAACTTGATATCTAAATACTCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGATTCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTACCTTCCTGATATTGTGGCTGAATCTTATCTGCATGGAAATGATGTCGTGGTTCATTAGAAATGGCCTCTCGTTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAAACGCCATTCTCTGCTTGATGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATAGTTGATGCAGTTGATGTGGAGGTAGTATGAGCAGCCACAATCTAGGTCTACACGCTTACGCCTGATTGGTTGTTTCTTGGCTATTTTGTGTTGGTCCTTGATTGGTACTGGAGAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAAGGAAATATTTTTTTCTTCGTCTAGATATTCCTTATATGAGGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCATACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGACTTAGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCGATGATAATACTGTTAGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTCGGACACCCATACTTCAAGTTCCTCTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAGATATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAATATAATCTTTCGGTGCTAATTCTTTAATGATTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCTGCGTAAGCGTCATTGGCTGATTGTTGTCCTCCTCTTGCAGATCTTCCATCGATCTGAAACTCACCCCAATCGATGGTGTCTCCGTCTTTATCGATGTAGGACTTGACATCAGATGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATGCCAGGTCGAAGAATCTGTTATTCGTGCACTGGTACTTGCCTTCGAACTGAACAAGGGCATGCAGATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAAATTTTAATGTATAATTTATTTACAGGAGTTTCGAGGGTTTGTAGTTGGGAAAGTGCTTCGGATAAAGAAAGAGAACACTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTTTAAAACGCTTTGGGGGAGCCATTTGGTCAATGTACCCCGATTGACTTGGATTTCATTTATCCCTGCAATCGGTGTAGTGGGGTACAATATATACTTGTACCCCAAATGGCAAATTGGTAATTTAGTAAAAGTATATTGCAATTCAAATTTCAAAATTCAAAAATCAAATCACTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_006465.1
Location 135-485
Gene Name V2
Protein Name precoat protein
Coding Region ATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCATGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGATTATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYSHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVSKAQNIQNVSKS

NCBI Accession YP_006466.1
Location 295-1068
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCGTTTGACAAGCGCCATGATTTGAAGCATACGGGTGAGGTATTGTGTGTTTCAGATGTAACACGTGGTAATGGCCTTACTCATCGTGTTGGGAAACGTTTTTGTATCAAGTCTATTTACATTGTTGGCAAAGTGTGGATGGATGAGAACATTAAGGTGAAGAATCATACTAACACTTGTATGTTCTGGCTTGTTCGGGATCGTCGTCCAGTTACTACTCCCTATGGATTTGGAGAATTGTTTAACATGTATGATAATGAGCCATCTACTGCCACTATTAAGAATGATCTGCGGGATCGTTGTCAGGTTCTTAAGAGGTTCACTGCTAGTTTGAGTGGTGGTCAATATGCGTCCAAAGAGCAATGTGTCATTAGGCGATTTTATAAGATTTATAACCATATTGTTTATAATCATCAAGAGCAGGGGAAATATGAGAATCATACTGAGAACGCTCTTTTACTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTACGCTACTCTTAAAATAAGGGTGTACTTCTACGATTCAATATCGAATTAA
Protein Sequence MSKRPGDIVISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTHRVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNEPSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSISN

NCBI Accession YP_006467.1
Location 1065-1469
Gene Name C3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCTCATCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAACGAGAGGCCATTTCTAATGAACCACGACATCATTTCCATGCAGATAAGATTCAGCCACAATATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGATATCAAGTTCTTAGATATTTAAATAATATTGGTGTAATTTCCATTAACAATGTAATTAGAGCAGTTGATCATGTATTGTATAATGTACTTGAAAACACAATAAATGTAACCGAGATTCACGATATAAAATATAAATTTTATTAA
Protein Sequence MDSRTGELITAHQAENGVFIWEINNPLYFKITEHNERPFLMNHDIISMQIRFSHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLRYLNNIGVISINNVIRAVDHVLYNVLENTINVTEIHDIKYKFY

NCBI Accession YP_006468.1
Location 1210-1617
Gene Name C2
Protein Name transactivation protein
Coding Region ATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCTCCAGTACCAATCAAGGACCAACACAAAATAGCCAAGAAACAACCAATCAGGCGTAAGCGTGTAGACCTAGATTGTGGCTGCTCATACTACCTCCACATCAACTGCATCAACTATGGATTCACGCACAGGGGAACTCATCACTGCTCATCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAACGAGAGGCCATTTCTAATGAACCACGACATCATTTCCATGCAGATAAGATTCAGCCACAATATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MQPSSPSTSHCSPVPIKDQHKIAKKQPIRRKRVDLDCGCSYYLHINCINYGFTHRGTHHCSSSREWRFYLGDKQSPIFQDNRTQREAISNEPRHHFHADKIQPQYQEGTGDSQMFSQLPNLDDLTASDWSFLKSI

NCBI Accession YP_006469.1
Location 1526-2605
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCTCCCCCAAAGCGTTTTAAAATAAATGCCAAAAATTATTTCCTTACTTATCCCCAGTGTTCTCTTTCTTTATCCGAAGCACTTTCCCAACTACAAACCCTCGAAACTCCTGTAAATAAATTATACATTAAAATTTGCAGAGAGCTCCACGAGAATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGCAAGTACCAGTGCACGAATAACAGATTCTTCGACCTGGCATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCATCTGATGTCAAGTCCTACATCGATAAAGACGGAGACACCATCGATTGGGGTGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAATCAGCCAATGACGCTTACGCAGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAGCACCGAAAGATTATATTTTACAGTTTCATAATTTAAATTCTAATTTAGATAGAATTTTTCAGGAGCCTCCGGCTCCTTATATCTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCAGAGGAACTTGAAGTATGGGTGTCCGAGAACGTCATGTCTTCCGCTGCGCGGCCATGGAGACCTAACAGTATTATCATCGAGGGTGATAGCAGAACAGGCAAAACAATGTGGGCTAGGTCTCTAGGCCCACATAACTATTTATGTGGACATCTAGACCTAAGTCCAAAGGTGTACAGTAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTATGGGAAGCCCATTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACCTCCTCATATAAGGAATATCTAGACGAAGAAAAAAATATTTCCTTGAAAAATTGGGCTCTCAAGAATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCTCCAGTACCAATCAAGGACCAACACAAAATAGCCAAGAAACAACCAATCAGGCGTAA
Protein Sequence MAPPKRFKINAKNYFLTYPQCSLSLSEALSQLQTLETPVNKLYIKICRELHENGEPHLHALVQFEGKYQCTNNRFFDLASPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRIIKELAPKDYILQFHNLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNISLKNWALKNATFVTLYEPLFSSTNQGPTQNSQETTNQA

NCBI Accession YP_006470.1
Location 2146-2448
Gene Name C4
Protein Name hypothetical protein
Coding Region ATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGCAAGTACCAGTGCACGAATAACAGATTCTTCGACCTGGCATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCATCTGATGTCAAGTCCTACATCGATAAAGACGGAGACACCATCGATTGGGGTGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAATCAGCCAATGACGCTTACGCAGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAG
Protein Sequence MGNLICMPLFSSKASTSARITDSSTWHPQVDQHISIQTFRELNPHLMSSPTSIKTETPSIGVSFRSMEDLQEEDNNQPMTLTQQHLTQAVSQRLLESLKN

References More References in PubMed

1

Generation and Characterization of Nanobodies Against Tomato Leaf Curl Sudan Virus.

Zakri AM, et al.  Plant Dis. 2021 Sep;105(9):2410-2417. doi: 10.1094/PDIS-11-20-2407-RE. Epub 2021 Oct 19.

PMID: 33599515

2

Association of tomato leaf curl Sudan virus with leaf curl disease of tomato in Jeddah, Saudi Arabia.

Sohrab SS, et al.  Virusdisease. 2016 Jun;27(2):145-53. doi: 10.1007/s13337-016-0308-x. Epub 2016 Mar 4.

PMID: 27366765

3

A Distinct Strain of Tomato leaf curl Sudan virus Causes Tomato Leaf Curl Disease in Oman.

Khan AJ, et al.  Plant Dis. 2013 Nov;97(11):1396-1402. doi: 10.1094/PDIS-02-13-0210-RE.

PMID: 30708466

4

Cotton leaf curl Gezira alphasatellite associated with tomato leaf curl Sudan virus approaches the expected upper size limit in the evolution of alphasatellites.

Fiallo-Olivé E, et al.  Virus Res. 2013 Dec 26;178(2):506-10. doi: 10.1016/j.virusres.2013.10.006. Epub 2013 Oct 16.

PMID: 24140627

5

Identification of Cotton leaf curl Gezira virus in Papaya in Oman.

Khan AJ, et al.  Plant Dis. 2012 Nov;96(11):1704. doi: 10.1094/PDIS-05-12-0438-PDN.

PMID: 30727467

6

Complete genome sequence of datura leaf curl virus, a novel begomovirus infecting Datura innoxia in Sudan, related to begomoviruses causing tomato yellow leaf curl disease.

Mohammed HS, et al.  Arch Virol. 2018 Jan;163(1):273-275. doi: 10.1007/s00705-017-3574-z. Epub 2017 Oct 4.

PMID: 28980080

7

Three Previously Unidentified Begomoviral Genotypes from Tomato Exhibiting Leaf Curl Disease Symptoms from Central Sudan.

Idris AM, et al.  Plant Dis. 2001 Nov;85(11):1209. doi: 10.1094/PDIS.2001.85.11.1209A.

PMID: 30823180

8

A Novel Strain of the Begomovirus Tomato Leaf Curl Sudan Virus Infecting Datura stramonium in Sudan.

Mohammed HS, et al.  Plant Dis. 2018 Sep;102(9):1863. doi: 10.1094/PDIS-01-18-0195-PDN. Epub 2018 Jul 6.

PMID: 30125192

9

Evidence for interspecific-recombination for three monopartite begomoviral genomes associated with the tomato leaf curl disease from central Sudan.

Idris AM, et al.  Arch Virol. 2005 May;150(5):1003-12. doi: 10.1007/s00705-004-0484-7. Epub 2005 Feb 10.

PMID: 15703848

10

Effect of Imidacloprid on Incidence of Tomato yellow leaf curl virus.

Ahmed NE, et al.  Plant Dis. 2001 Jan;85(1):84-87. doi: 10.1094/PDIS.2001.85.1.84.

PMID: 30832077