Tomato leaf curl Sudan virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCTCTTTTTAGTGGGTCCCACTCACGTCGCTATCAACCAATCAAAATGCATCCTCAAACGTTAGATAAGTGTTCATTTGTCCTTATATACTTGGTCCCCAAGTTGTTTGTCAAGCAATATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCATGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGATTATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCGTTTGACAAGCGCCATGATTTGAAGCATACGGGTGAGGTATTGTGTGTTTCAGATGTAACACGTGGTAATGGCCTTACTCATCGTGTTGGGAAACGTTTTTGTATCAAGTCTATTTACATTGTTGGCAAAGTGTGGATGGATGAGAACATTAAGGTGAAGAATCATACTAACACTTGTATGTTCTGGCTTGTTCGGGATCGTCGTCCAGTTACTACTCCCTATGGATTTGGAGAATTGTTTAACATGTATGATAATGAGCCATCTACTGCCACTATTAAGAATGATCTGCGGGATCGTTGTCAGGTTCTTAAGAGGTTCACTGCTAGTTTGAGTGGTGGTCAATATGCGTCCAAAGAGCAATGTGTCATTAGGCGATTTTATAAGATTTATAACCATATTGTTTATAATCATCAAGAGCAGGGGAAATATGAGAATCATACTGAGAACGCTCTTTTACTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTACGCTACTCTTAAAATAAGGGTGTACTTCTACGATTCAATATCGAATTAATAAAATTTATATTTTATATCGTGAATCTCGGTTACATTTATTGTGTTTTCAAGTACATTATACAATACATGATCAACTGCTCTAATTACATTGTTAATGGAAATTACACCAATATTATTTAAATATCTAAGAACTTGATATCTAAATACTCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGATTCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTACCTTCCTGATATTGTGGCTGAATCTTATCTGCATGGAAATGATGTCGTGGTTCATTAGAAATGGCCTCTCGTTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAAACGCCATTCTCTGCTTGATGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATAGTTGATGCAGTTGATGTGGAGGTAGTATGAGCAGCCACAATCTAGGTCTACACGCTTACGCCTGATTGGTTGTTTCTTGGCTATTTTGTGTTGGTCCTTGATTGGTACTGGAGAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAAGGAAATATTTTTTTCTTCGTCTAGATATTCCTTATATGAGGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCATACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGACTTAGGTCTAGATGTCCACATAAATAGTTATGTGGGCCTAGAGACCTAGCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCGATGATAATACTGTTAGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTCGGACACCCATACTTCAAGTTCCTCTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAGATATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAATATAATCTTTCGGTGCTAATTCTTTAATGATTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCTGCGTAAGCGTCATTGGCTGATTGTTGTCCTCCTCTTGCAGATCTTCCATCGATCTGAAACTCACCCCAATCGATGGTGTCTCCGTCTTTATCGATGTAGGACTTGACATCAGATGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATGCCAGGTCGAAGAATCTGTTATTCGTGCACTGGTACTTGCCTTCGAACTGAACAAGGGCATGCAGATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAAATTTTAATGTATAATTTATTTACAGGAGTTTCGAGGGTTTGTAGTTGGGAAAGTGCTTCGGATAAAGAAAGAGAACACTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTTTAAAACGCTTTGGGGGAGCCATTTGGTCAATGTACCCCGATTGACTTGGATTTCATTTATCCCTGCAATCGGTGTAGTGGGGTACAATATATACTTGTACCCCAAATGGCAAATTGGTAATTTAGTAAAAGTATATTGCAATTCAAATTTCAAAATTCAAAAATCAAATCACTAAAGCGGCCATCCGTATAATATT
Gene Information
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NCBI Accession
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YP_006465.1
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Location
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135-485 |
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Gene Name
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V2 |
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Protein Name
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precoat protein |
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Coding Region
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ATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCATGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGGCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGATTATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGA |
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Protein Sequence
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MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYSHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVSKAQNIQNVSKS |
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NCBI Accession
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YP_006466.1
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Location
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295-1068 |
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Gene Name
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V1 |
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Protein Name
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coat protein |
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Coding Region
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ATGTCGAAGCGACCCGGCGATATAGTCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGAATATACAGAATGTATCGAAGTCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCGTTTGACAAGCGCCATGATTTGAAGCATACGGGTGAGGTATTGTGTGTTTCAGATGTAACACGTGGTAATGGCCTTACTCATCGTGTTGGGAAACGTTTTTGTATCAAGTCTATTTACATTGTTGGCAAAGTGTGGATGGATGAGAACATTAAGGTGAAGAATCATACTAACACTTGTATGTTCTGGCTTGTTCGGGATCGTCGTCCAGTTACTACTCCCTATGGATTTGGAGAATTGTTTAACATGTATGATAATGAGCCATCTACTGCCACTATTAAGAATGATCTGCGGGATCGTTGTCAGGTTCTTAAGAGGTTCACTGCTAGTTTGAGTGGTGGTCAATATGCGTCCAAAGAGCAATGTGTCATTAGGCGATTTTATAAGATTTATAACCATATTGTTTATAATCATCAAGAGCAGGGGAAATATGAGAATCATACTGAGAACGCTCTTTTACTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTACGCTACTCTTAAAATAAGGGTGTACTTCTACGATTCAATATCGAATTAA |
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Protein Sequence
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MSKRPGDIVISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSFDKRHDLKHTGEVLCVSDVTRGNGLTHRVGKRFCIKSIYIVGKVWMDENIKVKNHTNTCMFWLVRDRRPVTTPYGFGELFNMYDNEPSTATIKNDLRDRCQVLKRFTASLSGGQYASKEQCVIRRFYKIYNHIVYNHQEQGKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSISN |
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NCBI Accession
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YP_006467.1
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Location
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1065-1469 |
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Gene Name
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C3 |
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Protein Name
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replication enhancer |
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Coding Region
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ATGGATTCACGCACAGGGGAACTCATCACTGCTCATCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAACGAGAGGCCATTTCTAATGAACCACGACATCATTTCCATGCAGATAAGATTCAGCCACAATATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGATATCAAGTTCTTAGATATTTAAATAATATTGGTGTAATTTCCATTAACAATGTAATTAGAGCAGTTGATCATGTATTGTATAATGTACTTGAAAACACAATAAATGTAACCGAGATTCACGATATAAAATATAAATTTTATTAA |
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Protein Sequence
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MDSRTGELITAHQAENGVFIWEINNPLYFKITEHNERPFLMNHDIISMQIRFSHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLRYLNNIGVISINNVIRAVDHVLYNVLENTINVTEIHDIKYKFY |
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NCBI Accession
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YP_006468.1
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Location
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1210-1617 |
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Gene Name
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C2 |
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Protein Name
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transactivation protein |
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Coding Region
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ATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCTCCAGTACCAATCAAGGACCAACACAAAATAGCCAAGAAACAACCAATCAGGCGTAAGCGTGTAGACCTAGATTGTGGCTGCTCATACTACCTCCACATCAACTGCATCAACTATGGATTCACGCACAGGGGAACTCATCACTGCTCATCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAACGAGAGGCCATTTCTAATGAACCACGACATCATTTCCATGCAGATAAGATTCAGCCACAATATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
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Protein Sequence
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MQPSSPSTSHCSPVPIKDQHKIAKKQPIRRKRVDLDCGCSYYLHINCINYGFTHRGTHHCSSSREWRFYLGDKQSPIFQDNRTQREAISNEPRHHFHADKIQPQYQEGTGDSQMFSQLPNLDDLTASDWSFLKSI |
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NCBI Accession
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YP_006469.1
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Location
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1526-2605 |
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Gene Name
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C1 |
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Protein Name
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replication-associated protein |
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Coding Region
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ATGGCTCCCCCAAAGCGTTTTAAAATAAATGCCAAAAATTATTTCCTTACTTATCCCCAGTGTTCTCTTTCTTTATCCGAAGCACTTTCCCAACTACAAACCCTCGAAACTCCTGTAAATAAATTATACATTAAAATTTGCAGAGAGCTCCACGAGAATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGCAAGTACCAGTGCACGAATAACAGATTCTTCGACCTGGCATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCATCTGATGTCAAGTCCTACATCGATAAAGACGGAGACACCATCGATTGGGGTGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAATCAGCCAATGACGCTTACGCAGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAGCACCGAAAGATTATATTTTACAGTTTCATAATTTAAATTCTAATTTAGATAGAATTTTTCAGGAGCCTCCGGCTCCTTATATCTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCAGAGGAACTTGAAGTATGGGTGTCCGAGAACGTCATGTCTTCCGCTGCGCGGCCATGGAGACCTAACAGTATTATCATCGAGGGTGATAGCAGAACAGGCAAAACAATGTGGGCTAGGTCTCTAGGCCCACATAACTATTTATGTGGACATCTAGACCTAAGTCCAAAGGTGTACAGTAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTATGGGAAGCCCATTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACCTCCTCATATAAGGAATATCTAGACGAAGAAAAAAATATTTCCTTGAAAAATTGGGCTCTCAAGAATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCTCCAGTACCAATCAAGGACCAACACAAAATAGCCAAGAAACAACCAATCAGGCGTAA |
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Protein Sequence
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MAPPKRFKINAKNYFLTYPQCSLSLSEALSQLQTLETPVNKLYIKICRELHENGEPHLHALVQFEGKYQCTNNRFFDLASPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRIIKELAPKDYILQFHNLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIIIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNISLKNWALKNATFVTLYEPLFSSTNQGPTQNSQETTNQA |
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NCBI Accession
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YP_006470.1
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Location
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2146-2448 |
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Gene Name
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C4 |
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Protein Name
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hypothetical protein |
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Coding Region
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ATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGCAAGTACCAGTGCACGAATAACAGATTCTTCGACCTGGCATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCTCATCTGATGTCAAGTCCTACATCGATAAAGACGGAGACACCATCGATTGGGGTGAGTTTCAGATCGATGGAAGATCTGCAAGAGGAGGACAACAATCAGCCAATGACGCTTACGCAGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAG |
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Protein Sequence
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MGNLICMPLFSSKASTSARITDSSTWHPQVDQHISIQTFRELNPHLMSSPTSIKTETPSIGVSFRSMEDLQEEDNNQPMTLTQQHLTQAVSQRLLESLKN |