Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000841305.1 |
Isolate | Sri Lanka:Bandarawela |
Release date | 2015/2/12 |
Submitter | Shih,S.L., Nakhla,M.K., Maxwell,D.P., Green,S.K., Hanson,P. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_808822.1 |
---|---|
Location | 197-481 |
Gene Name | V2 |
Protein Name | pre-coat protein |
Coding Region | ATGCTTGCTATAAAATACTTGCAGCTGATAGAAAATACGTATTCCCCTGACTCATTGGGATACGATCTGATACGTGATTTAATTTCCGTCGTCCGGGCTAAGAGCTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAG |
Protein Sequence | MLAIKYLQLIENTYSPDSLGYDLIRDLISVVRAKSYVQASSRYDHFRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQNV |
NCBI Accession | NP_808823.1 |
---|---|
Location | 303-1073 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAGAAGCCCTGACGTCCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTCGAGTCTAGGCATGATGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACAGGTCTGACCCATAGGATAGGTAAGCGTTTCTGTGCTAAGTCTGTCTATGTTCTGGGAAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTTTTCCTTGTTCGTGATCGTCGTCCCGTTGACAAGCCTCAAGATTTTGGTGATGTGTTTAACATGTTCGATAACGAGCCTAGTACCGCAACTGTCAAAAATATGCACAGGGATCGTTACCAGGTTCTCCGGAAGTGGCATGCTACTGTTACTGGTGGTCAGTATGCGTCTAAGGAGCAGGCTCTTGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACTCTGAAAATACGGATCTATTTCTACGATTCGGTGACAAATTAA |
Protein Sequence | MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRATKGKEWANRPMNRKPMFYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRIGKRFCAKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession | NP_808824.1 |
---|---|
Location | 1070-1474 |
Gene Name | C3 |
Protein Name | C3 protein |
Coding Region | ATGGATTTACGCACAGGGGAACACATAACTGCAGTTCAGGCAATGAATGGCGTCAGTATCTCGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAACCACGACAACCGGCCATTCAACTCGAACACAGACCTGATAACTGTAAGGGTTCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACATTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGAACCCAAGTGTTGCAATTTATCAAAAATTTAGATGTAATTAGCATAAACAATGTACTTAGGGCTGTCGATCATGTATTATGGAATGTATTAACGCAAACAATGTATGTACAAAGTTCTAACATAATAAAATTTAATCTTTATTAA |
Protein Sequence | MDLRTGEHITAVQAMNGVSISQVPNPLYFKILNHDNRPFNSNTDLITVRVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFIKNLDVISINNVLRAVDHVLWNVLTQTMYVQSSNIIKFNLY |
NCBI Accession | NP_808825.1 |
---|---|
Location | 1215-1619 |
Gene Name | C2 |
Protein Name | C2 protein |
Coding Region | ATGCGATCTTCGTCACCCTCGCAGGGCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAAGACAATCAGGAGGAAGAGAATAGACCTTGAGTGTGGTTGTTCATATTACCTAAGCATCAACTGCAGGAACCATGGATTTACGCACAGGGGAACACATAACTGCAGTTCAGGCAATGAATGGCGTCAGTATCTCGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAACCACGACAACCGGCCATTCAACTCGAACACAGACCTGATAACTGTAAGGGTTCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACATTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG |
Protein Sequence | MRSSSPSQGHYTQVPIKVLHRQAKKTIRRKRIDLECGCSYYLSINCRNHGFTHRGTHNCSSGNEWRQYLAGPKSPIFQDPQPRQPAIQLEHRPDNCKGSVQPQPSESVGDTQMFSNIPNLDDLTASDWSFLKGI |
NCBI Accession | NP_808826.1 |
---|---|
Location | 1516-2607 |
Gene Name | C1 |
Protein Name | rep protein |
Coding Region | ATGTCTCCACCAAAACGTTTTCAAATATTTGCAAAAAATTATTTTCTAACATATCCTCAGTGTTCTCTTACAAAAGAAGAAGCACTTTCCCAATTACAAAATCTAAATACTCCAACAAACAAATTATTCATAAGAATTTGCAGAGAATTACACGATAATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAATGTCAAAACAACAGATTCTTCGACTTGGTATCCCCAACCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCGGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCCTTGATTTTGGAATTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCTAAATCATCGGCACTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTATTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATCTTTACACCTCCAGTGGAGGTTTATATTTCTCCTTTTTCTCTTTCTTCTTTTGATCAAGTTCCTGATGAACTTGAAGAGTGGGCGGCGATTAACGTTGTCAGTGCCGCTGCGCGGCCTATAAGACCCATAGGAATTATTGTTGAGGGTGATAGTCGTACGGGCAAAACAATGTGGGCTAGGTCCATCGGCCCACACAATTACTTGTGCGGCCATTTGGACTTAAGCCCAAGAGTGTATTCAAATGACGCATGGTATAACGTCATTGATGATGTCGATCCGCATTATTTGAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAATACCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCCACTATATTCCTATGCAATCCAGGGCCCAACTCCAGCTATAAAGAGTTCTTGGACGAAGAAAAGAATTCCGCACTAAGAAATTGGGCACTCAAGAATGCGATCTTCGTCACCCTCGCAGGGCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAAGACAATCAGGAGGAAGAGAATAGACCTTGA |
Protein Sequence | MSPPKRFQIFAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKLFIRICRELHDNGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVLDFGIFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNANLDRIFTPPVEVYISPFSLSSFDQVPDELEEWAAINVVSAAARPIRPIGIIVEGDSRTGKTMWARSIGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRNWALKNAIFVTLAGPLYSGTNQGSPQASQEDNQEEENRP |
NCBI Accession | NP_808827.1 |
---|---|
Location | 2157-2450 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAATGTCAAAACAACAGATTCTTCGACTTGGTATCCCCAACCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCGGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCCTTGATTTTGGAATTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCTAAATCATCGGCACTCAATATTTTAA |
Protein Sequence | MGNLIYTCSSNSKENSNVKTTDSSTWYPQPDQHISIQTFRELKARRMSNPIWKKTETSLILEFSKSMEDQLEEVASLQTTHMPRQSIQGLNHRHSIF |
1 |
Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China. Li R, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print. PMID: 36281022 |
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2 |
Molecular detection and partial characterization of Tomato Yellow Leaf Curl Virus in Sri Lanka. Samarakoon SA, et al. Pak J Biol Sci. 2012 Sep 15;15(18):863-70. doi: 10.3923/pjbs.2012.863.870. PMID: 24205755 |
3 |
A new begomovirus-betasatellite complex is associated with chilli leaf curl disease in Sri Lanka. Senanayake DM, et al. Virus Genes. 2013 Feb;46(1):128-39. doi: 10.1007/s11262-012-0836-4. Epub 2012 Oct 23. PMID: 23090833 |
4 |
Shingote PR, et al. Front Microbiol. 2022 Jun 29;13:899512. doi: 10.3389/fmicb.2022.899512. eCollection 2022. PMID: 35847087 |
5 |
Venkataravanappa V, et al. Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28. PMID: 37119939 |
6 |
Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India. Das S, et al. Arch Virol. 2018 Sep;163(9):2551-2554. doi: 10.1007/s00705-018-3861-3. Epub 2018 May 9. PMID: 29744588 |
7 |
Kirthi N, et al. Arch Virol. 2004 Oct;149(10):2047-57. doi: 10.1007/s00705-004-0352-5. PMID: 15669112 |