Tomato leaf curl Sri Lanka virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841305.1
Isolate Sri Lanka:Bandarawela
Release date 2015/2/12
Submitter Shih,S.L., Nakhla,M.K., Maxwell,D.P., Green,S.K., Hanson,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004647
ACCGGATGGCCGCGCCCCTTTCTGTCTCTATCATTGACCCCACCACTAAATCATGTCCACCAATCATATGTCACACTGAAAGCTTAATTATTTATTTTTGTCCTTATATAAACTTAGTCACCAAGTTTTACTGTTATGTAAAATGTAGGATCCACTCTTAAATGATTTTCCTGAAACCGTACACGGATTCAGGTGTATGCTTGCTATAAAATACTTGCAGCTGATAGAAAATACGTATTCCCCTGACTCATTGGGATACGATCTGATACGTGATTTAATTTCCGTCGTCCGGGCTAAGAGCTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAGAAGCCCTGACGTCCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTCGAGTCTAGGCATGATGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACAGGTCTGACCCATAGGATAGGTAAGCGTTTCTGTGCTAAGTCTGTCTATGTTCTGGGAAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTTTTCCTTGTTCGTGATCGTCGTCCCGTTGACAAGCCTCAAGATTTTGGTGATGTGTTTAACATGTTCGATAACGAGCCTAGTACCGCAACTGTCAAAAATATGCACAGGGATCGTTACCAGGTTCTCCGGAAGTGGCATGCTACTGTTACTGGTGGTCAGTATGCGTCTAAGGAGCAGGCTCTTGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACTCTGAAAATACGGATCTATTTCTACGATTCGGTGACAAATTAATAAAGATTAAATTTTATTATGTTAGAACTTTGTACATACATTGTTTGCGTTAATACATTCCATAATACATGATCGACAGCCCTAAGTACATTGTTTATGCTAATTACATCTAAATTTTTGATAAATTGCAACACTTGGGTTCTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAATGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCGAAGGTTGTGGTTGAACTGAACCCTTACAGTTATCAGGTCTGTGTTCGAGTTGAATGGCCGGTTGTCGTGGTTGAGGATCTTGAAATATAGGGGATTTGGGACCTGCGAGATACTGACGCCATTCATTGCCTGAACTGCAGTTATGTGTTCCCCTGTGCGTAAATCCATGGTTCCTGCAGTTGATGCTTAGGTAATATGAACAACCACACTCAAGGTCTATTCTCTTCCTCCTGATTGTCTTCTTGGCTTGCCTGTGGAGAACCTTGATTGGTACCTGAGTATAGTGGCCCTGCGAGGGTGACGAAGATCGCATTCTTGAGTGCCCAATTTCTTAGTGCGGAATTCTTTTCTTCGTCCAAGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACACTCTTGGGCTTAAGTCCAAATGGCCGCACAAGTAATTGTGTGGGCCGATGGACCTAGCCCACATTGTTTTGCCCGTACGACTATCACCCTCAACAATAATTCCTATGGGTCTTATAGGCCGCGCAGCGGCACTGACAACGTTAATCGCCGCCCACTCTTCAAGTTCATCAGGAACTTGATCAAAAGAAGAAAGAGAAAAAGGAGAAATATAAACCTCCACTGGAGGTGTAAAGATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGTGCCGATGATTTAGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAATTCCAAAATCAAGGACGTCTCCGTCTTTTTCCATATAGGATTTGACATCCGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCGGGTTGGGGATACCAAGTCGAAGAATCTGTTGTTTTGACATTTGAATTTTCCTTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTATCGTGTAATTCTCTGCAAATTCTTATGAATAATTTGTTTGTTGGAGTATTTAGATTTTGTAATTGGGAAAGTGCTTCTTCTTTTGTAAGAGAACACTGAGGATATGTTAGAAAATAATTTTTTGCAAATATTTGAAAACGTTTTGGTGGAGACATATTGACTTGGTCAATTGGTACTCAACAAACTCGGCTATGCTATCGGTACTATGGTACTCAATATATACCTGAGTACTAAATGGCATAATTGTAATTTTGAGGAAATTTCCAATCTAATTCCCACCAAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession NP_808822.1
Location 197-481
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGCTTGCTATAAAATACTTGCAGCTGATAGAAAATACGTATTCCCCTGACTCATTGGGATACGATCTGATACGTGATTTAATTTCCGTCGTCCGGGCTAAGAGCTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAG
Protein Sequence MLAIKYLQLIENTYSPDSLGYDLIRDLISVVRAKSYVQASSRYDHFRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQNV

NCBI Accession NP_808823.1
Location 303-1073
Gene Name V1
Protein Name coat protein
Coding Region ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAGAAGCCCTGACGTCCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTCGAGTCTAGGCATGATGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACAGGTCTGACCCATAGGATAGGTAAGCGTTTCTGTGCTAAGTCTGTCTATGTTCTGGGAAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTTTTCCTTGTTCGTGATCGTCGTCCCGTTGACAAGCCTCAAGATTTTGGTGATGTGTTTAACATGTTCGATAACGAGCCTAGTACCGCAACTGTCAAAAATATGCACAGGGATCGTTACCAGGTTCTCCGGAAGTGGCATGCTACTGTTACTGGTGGTCAGTATGCGTCTAAGGAGCAGGCTCTTGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACTCTGAAAATACGGATCTATTTCTACGATTCGGTGACAAATTAA
Protein Sequence MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRATKGKEWANRPMNRKPMFYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRIGKRFCAKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_808824.1
Location 1070-1474
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAACACATAACTGCAGTTCAGGCAATGAATGGCGTCAGTATCTCGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAACCACGACAACCGGCCATTCAACTCGAACACAGACCTGATAACTGTAAGGGTTCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACATTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGAACCCAAGTGTTGCAATTTATCAAAAATTTAGATGTAATTAGCATAAACAATGTACTTAGGGCTGTCGATCATGTATTATGGAATGTATTAACGCAAACAATGTATGTACAAAGTTCTAACATAATAAAATTTAATCTTTATTAA
Protein Sequence MDLRTGEHITAVQAMNGVSISQVPNPLYFKILNHDNRPFNSNTDLITVRVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFIKNLDVISINNVLRAVDHVLWNVLTQTMYVQSSNIIKFNLY

NCBI Accession NP_808825.1
Location 1215-1619
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGATCTTCGTCACCCTCGCAGGGCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAAGACAATCAGGAGGAAGAGAATAGACCTTGAGTGTGGTTGTTCATATTACCTAAGCATCAACTGCAGGAACCATGGATTTACGCACAGGGGAACACATAACTGCAGTTCAGGCAATGAATGGCGTCAGTATCTCGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAACCACGACAACCGGCCATTCAACTCGAACACAGACCTGATAACTGTAAGGGTTCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACATTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG
Protein Sequence MRSSSPSQGHYTQVPIKVLHRQAKKTIRRKRIDLECGCSYYLSINCRNHGFTHRGTHNCSSGNEWRQYLAGPKSPIFQDPQPRQPAIQLEHRPDNCKGSVQPQPSESVGDTQMFSNIPNLDDLTASDWSFLKGI

NCBI Accession NP_808826.1
Location 1516-2607
Gene Name C1
Protein Name rep protein
Coding Region ATGTCTCCACCAAAACGTTTTCAAATATTTGCAAAAAATTATTTTCTAACATATCCTCAGTGTTCTCTTACAAAAGAAGAAGCACTTTCCCAATTACAAAATCTAAATACTCCAACAAACAAATTATTCATAAGAATTTGCAGAGAATTACACGATAATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAATGTCAAAACAACAGATTCTTCGACTTGGTATCCCCAACCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCGGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCCTTGATTTTGGAATTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCTAAATCATCGGCACTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTATTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATCTTTACACCTCCAGTGGAGGTTTATATTTCTCCTTTTTCTCTTTCTTCTTTTGATCAAGTTCCTGATGAACTTGAAGAGTGGGCGGCGATTAACGTTGTCAGTGCCGCTGCGCGGCCTATAAGACCCATAGGAATTATTGTTGAGGGTGATAGTCGTACGGGCAAAACAATGTGGGCTAGGTCCATCGGCCCACACAATTACTTGTGCGGCCATTTGGACTTAAGCCCAAGAGTGTATTCAAATGACGCATGGTATAACGTCATTGATGATGTCGATCCGCATTATTTGAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAATACCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCCACTATATTCCTATGCAATCCAGGGCCCAACTCCAGCTATAAAGAGTTCTTGGACGAAGAAAAGAATTCCGCACTAAGAAATTGGGCACTCAAGAATGCGATCTTCGTCACCCTCGCAGGGCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAAGACAATCAGGAGGAAGAGAATAGACCTTGA
Protein Sequence MSPPKRFQIFAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKLFIRICRELHDNGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVLDFGIFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNANLDRIFTPPVEVYISPFSLSSFDQVPDELEEWAAINVVSAAARPIRPIGIIVEGDSRTGKTMWARSIGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRNWALKNAIFVTLAGPLYSGTNQGSPQASQEDNQEEENRP

NCBI Accession NP_808827.1
Location 2157-2450
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAATGTCAAAACAACAGATTCTTCGACTTGGTATCCCCAACCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCGGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCCTTGATTTTGGAATTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCTAAATCATCGGCACTCAATATTTTAA
Protein Sequence MGNLIYTCSSNSKENSNVKTTDSSTWYPQPDQHISIQTFRELKARRMSNPIWKKTETSLILEFSKSMEDQLEEVASLQTTHMPRQSIQGLNHRHSIF

References More References in PubMed

1

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022
2

Molecular detection and partial characterization of Tomato Yellow Leaf Curl Virus in Sri Lanka.

Samarakoon SA, et al.  Pak J Biol Sci. 2012 Sep 15;15(18):863-70. doi: 10.3923/pjbs.2012.863.870.

PMID: 24205755
3

A new begomovirus-betasatellite complex is associated with chilli leaf curl disease in Sri Lanka.

Senanayake DM, et al.  Virus Genes. 2013 Feb;46(1):128-39. doi: 10.1007/s11262-012-0836-4. Epub 2012 Oct 23.

PMID: 23090833
4

An Overview of Chili Leaf Curl Disease: Molecular Mechanisms, Impact, Challenges, and Disease Management Strategies in Indian Subcontinent.

Shingote PR, et al.  Front Microbiol. 2022 Jun 29;13:899512. doi: 10.3389/fmicb.2022.899512. eCollection 2022.

PMID: 35847087
5

Diversity and phylogeography of begomoviruses and DNA satellites associated with the leaf curl and mosaic disease complex of eggplant.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28.

PMID: 37119939
6

Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India.

Das S, et al.  Arch Virol. 2018 Sep;163(9):2551-2554. doi: 10.1007/s00705-018-3861-3. Epub 2018 May 9.

PMID: 29744588
7

Genetic variability of begomoviruses associated with cotton leaf curl disease originating from India.

Kirthi N, et al.  Arch Virol. 2004 Oct;149(10):2047-57. doi: 10.1007/s00705-004-0352-5.

PMID: 15669112