Tomato leaf curl Sri Lanka virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000841305.1 |
| Isolate | Sri Lanka:Bandarawela |
| Release date | 2015/2/12 |
| Submitter | Shih,S.L., Nakhla,M.K., Maxwell,D.P., Green,S.K., Hanson,P. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_004647
ACCGGATGGCCGCGCCCCTTTCTGTCTCTATCATTGACCCCACCACTAAATCATGTCCACCAATCATATGTCACACTGAAAGCTTAATTATTTATTTTTGTCCTTATATAAACTTAGTCACCAAGTTTTACTGTTATGTAAAATGTAGGATCCACTCTTAAATGATTTTCCTGAAACCGTACACGGATTCAGGTGTATGCTTGCTATAAAATACTTGCAGCTGATAGAAAATACGTATTCCCCTGACTCATTGGGATACGATCTGATACGTGATTTAATTTCCGTCGTCCGGGCTAAGAGCTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAGAAGCCCTGACGTCCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTCGAGTCTAGGCATGATGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACAGGTCTGACCCATAGGATAGGTAAGCGTTTCTGTGCTAAGTCTGTCTATGTTCTGGGAAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTTTTCCTTGTTCGTGATCGTCGTCCCGTTGACAAGCCTCAAGATTTTGGTGATGTGTTTAACATGTTCGATAACGAGCCTAGTACCGCAACTGTCAAAAATATGCACAGGGATCGTTACCAGGTTCTCCGGAAGTGGCATGCTACTGTTACTGGTGGTCAGTATGCGTCTAAGGAGCAGGCTCTTGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACTCTGAAAATACGGATCTATTTCTACGATTCGGTGACAAATTAATAAAGATTAAATTTTATTATGTTAGAACTTTGTACATACATTGTTTGCGTTAATACATTCCATAATACATGATCGACAGCCCTAAGTACATTGTTTATGCTAATTACATCTAAATTTTTGATAAATTGCAACACTTGGGTTCTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAATGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCGAAGGTTGTGGTTGAACTGAACCCTTACAGTTATCAGGTCTGTGTTCGAGTTGAATGGCCGGTTGTCGTGGTTGAGGATCTTGAAATATAGGGGATTTGGGACCTGCGAGATACTGACGCCATTCATTGCCTGAACTGCAGTTATGTGTTCCCCTGTGCGTAAATCCATGGTTCCTGCAGTTGATGCTTAGGTAATATGAACAACCACACTCAAGGTCTATTCTCTTCCTCCTGATTGTCTTCTTGGCTTGCCTGTGGAGAACCTTGATTGGTACCTGAGTATAGTGGCCCTGCGAGGGTGACGAAGATCGCATTCTTGAGTGCCCAATTTCTTAGTGCGGAATTCTTTTCTTCGTCCAAGAACTCTTTATAGCTGGAGTTGGGCCCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAAATAATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACACTCTTGGGCTTAAGTCCAAATGGCCGCACAAGTAATTGTGTGGGCCGATGGACCTAGCCCACATTGTTTTGCCCGTACGACTATCACCCTCAACAATAATTCCTATGGGTCTTATAGGCCGCGCAGCGGCACTGACAACGTTAATCGCCGCCCACTCTTCAAGTTCATCAGGAACTTGATCAAAAGAAGAAAGAGAAAAAGGAGAAATATAAACCTCCACTGGAGGTGTAAAGATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGTGCCGATGATTTAGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAATTCCAAAATCAAGGACGTCTCCGTCTTTTTCCATATAGGATTTGACATCCGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCGGGTTGGGGATACCAAGTCGAAGAATCTGTTGTTTTGACATTTGAATTTTCCTTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTATCGTGTAATTCTCTGCAAATTCTTATGAATAATTTGTTTGTTGGAGTATTTAGATTTTGTAATTGGGAAAGTGCTTCTTCTTTTGTAAGAGAACACTGAGGATATGTTAGAAAATAATTTTTTGCAAATATTTGAAAACGTTTTGGTGGAGACATATTGACTTGGTCAATTGGTACTCAACAAACTCGGCTATGCTATCGGTACTATGGTACTCAATATATACCTGAGTACTAAATGGCATAATTGTAATTTTGAGGAAATTTCCAATCTAATTCCCACCAAAAGCGGCCATCCGTCTAATATT
Gene Information
| NCBI Accession | NP_808822.1 |
|---|---|
| Location | 197-481 |
| Gene Name | V2 |
| Protein Name | pre-coat protein |
| Coding Region | ATGCTTGCTATAAAATACTTGCAGCTGATAGAAAATACGTATTCCCCTGACTCATTGGGATACGATCTGATACGTGATTTAATTTCCGTCGTCCGGGCTAAGAGCTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAG |
| Protein Sequence | MLAIKYLQLIENTYSPDSLGYDLIRDLISVVRAKSYVQASSRYDHFRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQNV |
| NCBI Accession | NP_808823.1 |
|---|---|
| Location | 303-1073 |
| Gene Name | V1 |
| Protein Name | coat protein |
| Coding Region | ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTCTACAGAATGTATAGAAGCCCTGACGTCCCAAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTCGAGTCTAGGCATGATGTAGTTCATATTGGTAAGGTTATGTGTATTAGTGATGTTACTAGGGGTACAGGTCTGACCCATAGGATAGGTAAGCGTTTCTGTGCTAAGTCTGTCTATGTTCTGGGAAAGATATGGATGGATGAGAACATCAAAACCAAGAACCACACTAACAGTGTTATGTTTTTCCTTGTTCGTGATCGTCGTCCCGTTGACAAGCCTCAAGATTTTGGTGATGTGTTTAACATGTTCGATAACGAGCCTAGTACCGCAACTGTCAAAAATATGCACAGGGATCGTTACCAGGTTCTCCGGAAGTGGCATGCTACTGTTACTGGTGGTCAGTATGCGTCTAAGGAGCAGGCTCTTGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCAAACCCTGTGTATGCTACTCTGAAAATACGGATCTATTTCTACGATTCGGTGACAAATTAA |
| Protein Sequence | MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRATKGKEWANRPMNRKPMFYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRIGKRFCAKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
| NCBI Accession | NP_808824.1 |
|---|---|
| Location | 1070-1474 |
| Gene Name | C3 |
| Protein Name | C3 protein |
| Coding Region | ATGGATTTACGCACAGGGGAACACATAACTGCAGTTCAGGCAATGAATGGCGTCAGTATCTCGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAACCACGACAACCGGCCATTCAACTCGAACACAGACCTGATAACTGTAAGGGTTCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACATTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGAACCCAAGTGTTGCAATTTATCAAAAATTTAGATGTAATTAGCATAAACAATGTACTTAGGGCTGTCGATCATGTATTATGGAATGTATTAACGCAAACAATGTATGTACAAAGTTCTAACATAATAAAATTTAATCTTTATTAA |
| Protein Sequence | MDLRTGEHITAVQAMNGVSISQVPNPLYFKILNHDNRPFNSNTDLITVRVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFIKNLDVISINNVLRAVDHVLWNVLTQTMYVQSSNIIKFNLY |
| NCBI Accession | NP_808825.1 |
|---|---|
| Location | 1215-1619 |
| Gene Name | C2 |
| Protein Name | C2 protein |
| Coding Region | ATGCGATCTTCGTCACCCTCGCAGGGCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAAGACAATCAGGAGGAAGAGAATAGACCTTGAGTGTGGTTGTTCATATTACCTAAGCATCAACTGCAGGAACCATGGATTTACGCACAGGGGAACACATAACTGCAGTTCAGGCAATGAATGGCGTCAGTATCTCGCAGGTCCCAAATCCCCTATATTTCAAGATCCTCAACCACGACAACCGGCCATTCAACTCGAACACAGACCTGATAACTGTAAGGGTTCAGTTCAACCACAACCTTCGGAAAGCGTTGGGGATACACAAATGTTTTCTAACATTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG |
| Protein Sequence | MRSSSPSQGHYTQVPIKVLHRQAKKTIRRKRIDLECGCSYYLSINCRNHGFTHRGTHNCSSGNEWRQYLAGPKSPIFQDPQPRQPAIQLEHRPDNCKGSVQPQPSESVGDTQMFSNIPNLDDLTASDWSFLKGI |
| NCBI Accession | NP_808826.1 |
|---|---|
| Location | 1516-2607 |
| Gene Name | C1 |
| Protein Name | rep protein |
| Coding Region | ATGTCTCCACCAAAACGTTTTCAAATATTTGCAAAAAATTATTTTCTAACATATCCTCAGTGTTCTCTTACAAAAGAAGAAGCACTTTCCCAATTACAAAATCTAAATACTCCAACAAACAAATTATTCATAAGAATTTGCAGAGAATTACACGATAATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAATGTCAAAACAACAGATTCTTCGACTTGGTATCCCCAACCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCGGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCCTTGATTTTGGAATTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCTAAATCATCGGCACTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTATTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATCTTTACACCTCCAGTGGAGGTTTATATTTCTCCTTTTTCTCTTTCTTCTTTTGATCAAGTTCCTGATGAACTTGAAGAGTGGGCGGCGATTAACGTTGTCAGTGCCGCTGCGCGGCCTATAAGACCCATAGGAATTATTGTTGAGGGTGATAGTCGTACGGGCAAAACAATGTGGGCTAGGTCCATCGGCCCACACAATTACTTGTGCGGCCATTTGGACTTAAGCCCAAGAGTGTATTCAAATGACGCATGGTATAACGTCATTGATGATGTCGATCCGCATTATTTGAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAATACCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCCACTATATTCCTATGCAATCCAGGGCCCAACTCCAGCTATAAAGAGTTCTTGGACGAAGAAAAGAATTCCGCACTAAGAAATTGGGCACTCAAGAATGCGATCTTCGTCACCCTCGCAGGGCCACTATACTCAGGTACCAATCAAGGTTCTCCACAGGCAAGCCAAGAAGACAATCAGGAGGAAGAGAATAGACCTTGA |
| Protein Sequence | MSPPKRFQIFAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKLFIRICRELHDNGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVLDFGIFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNANLDRIFTPPVEVYISPFSLSSFDQVPDELEEWAAINVVSAAARPIRPIGIIVEGDSRTGKTMWARSIGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRNWALKNAIFVTLAGPLYSGTNQGSPQASQEDNQEEENRP |
| NCBI Accession | NP_808827.1 |
|---|---|
| Location | 2157-2450 |
| Gene Name | C4 |
| Protein Name | C4 protein |
| Coding Region | ATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAATGTCAAAACAACAGATTCTTCGACTTGGTATCCCCAACCCGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCGGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCCTTGATTTTGGAATTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCTAAATCATCGGCACTCAATATTTTAA |
| Protein Sequence | MGNLIYTCSSNSKENSNVKTTDSSTWYPQPDQHISIQTFRELKARRMSNPIWKKTETSLILEFSKSMEDQLEEVASLQTTHMPRQSIQGLNHRHSIF |
References More References in PubMed
| 1 |
Molecular detection and partial characterization of Tomato Yellow Leaf Curl Virus in Sri Lanka. Samarakoon SA, et al. Pak J Biol Sci. 2012 Sep 15;15(18):863-70. doi: 10.3923/pjbs.2012.863.870. PMID: 24205755 |
|---|---|
| 2 |
A new begomovirus-betasatellite complex is associated with chilli leaf curl disease in Sri Lanka. Senanayake DM, et al. Virus Genes. 2013 Feb;46(1):128-39. doi: 10.1007/s11262-012-0836-4. Epub 2012 Oct 23. PMID: 23090833 |
| 3 |
Shingote PR, et al. Front Microbiol. 2022 Jun 29;13:899512. doi: 10.3389/fmicb.2022.899512. eCollection 2022. PMID: 35847087 |
| 4 |
Venkataravanappa V, et al. Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28. PMID: 37119939 |
| 5 |
Kirthi N, et al. Arch Virol. 2004 Oct;149(10):2047-57. doi: 10.1007/s00705-004-0352-5. PMID: 15669112 |
| 6 |
Jayanthi P, et al. Int Microbiol. 2025 Apr;28(4):863-876. doi: 10.1007/s10123-024-00580-0. Epub 2024 Sep 4. PMID: 39230779 |
| 7 |
Molecular characterization of a new begomovirus infecting Synedrella nodiflora in South India. Das S, et al. Arch Virol. 2018 Sep;163(9):2551-2554. doi: 10.1007/s00705-018-3861-3. Epub 2018 May 9. PMID: 29744588 |