Tomato leaf curl Seychelles virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000871445.1
Isolate Seychelles:Mahe
Release date 2015/2/13
Submitter Lefeuvre,P., Delatte,H., Naze,F., Dogley,W., Reynaud,B., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_009031
ACCGGATGGCCGCGCCCCCAAAAAAGAAAGTGGGCCCCGCGCACTAGTTTGTGTCGGCCAATGAGAGAGGTCCGTCATAGCTTAGTTATTTCATTTTGGTCTTTAAATTGCGTGGTCCCCAAGCTTCAGTCGTTGTCAGTATGTGGGACCCACTTGTAAACGAGTTCCCAGACTCTGTTCATGGTTTTCGTTGTATGCTTGCTATTAAATATTTGCAGGCCGTGGAAGAAACTTACGAGCCCAATACATTGGGCTACGATTTAATTCGTGATCTTATTTGTGTTATTAGGGCCCGTGATTATGTCGAAGCGACCCGGAGATATAATAATTTCCACACCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTATACCAGCCGTGTTGCTGCCCCCATTGCCCAAGGCACAAGCAGACGTCGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTATCGAATGTACAAAAGTCCTGATGTTCCTCGTGGTTGTGAAGGGCCATGTAAGGTCCAGTCGTATGAGCAGAGGGATGATGTCAAGCACACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTATTAAGTCGATATATATCTTAGGTAAGATCTGGATGGATGACAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTACGGCTCGGCTCCAATGGATTTTGGACAGGTGTTTAATATGTTTGATAATGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGGGACAGATATCAGGTCATGAGGAAATTTCATTCAACTGTAGTTGGTGGACCCTCTGGATCGAAGGAGCAGGCATTAGTTAAGAGGTTTTTTAGGATTAATAGCCATGTAACTTATAATCATCAGGAGGCAGCTAAGTATGAGAACCATACTGAGAATGCCTTATTATTGTATATGGCATGTACTCATGCGTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTATTTCTATGATTCGGTCAGTAATTAATAGATATTAAATTTTATTGCATGATTCTCCGTAACTTGGAGGGTATTTACAAGTACATCGTGTAATACATAATCAACTGCTCTAATTATTGCATTAATTGAAATTACACCTAAGGAATCTAAATACTTGAGAACTTGGGTCTTAAATACGGTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAACGCCTTCCTCAGGTTGTGGTTGAACCTTATTTGGAATGATATGATGTCTTGGTTCGTGTTGAATGGCCGGCTGTCGTGGTCGATGATCTTGAAATAGAGGGGATTTTTTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCGGTGCGTAATCCATGGCTGCTACAATTGATATGTATATAATATGAGCAGCCGCAGTCTAGGTCTATGCGCTTACGTCTGACTGCTCTCGTTTTCGCTATGCGGTGTTGGACCTTGATTGGTACTTGTGAAGAGTGGCTCGTGGAGGGTGATGAAGGTGGCATTCTTGAAGGCCCAGTCTTTTAGTGGTGTATTCTTTTCCTCGTCTAGATACTCTTTATACGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTCAGGTAGTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACTTTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACCCTCTATCACAATACTAATCGGTCTCCAAGGCCGCGCAGCGGCACCCATCACGTTTTCAGCCGCCCAGACTTCAAGTTCTTCCGGAACTTGATTGAAAGAAGAACAAAGAAAAGGAGAAATATAAGGAGCCGGAGGCTCCTGAAAAATCCTATCTAAATTACTAACTAAATTATGATACTGAAAAATAAATTTTTCAGGGAGTTTCTCCCTTATGATTTGCAAAGCAGCGTCTTTACTACCTGCATTTAAGGCATCCGCTGCCGCATCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACCTGAAAAGTACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCTGATGAGGATTTAGCTCCCTGGAAATTTGGATGGAATTGGGAGGAGCTGGTGGGGTGTTGAAGGTCGAAATGTCTGGGGTTTTTAAATTGGGCTTTACCCTTGAACTGGATGAGAGCATGGAGGTGCAGAGACCCATCCTGGTGTTTTTCCTGGCTAACTCTGATAAATAATTTATCAGATGGGCATTTTATTGCCTTTAATAGCTCAAGAGCTATTTCTTTAGAAAGAGAGCATTTGGGATATGTAAGGAAGATATTTTTAGCTGACACTCTAAAACCTGGTTGACGAGGCATATTGGTGTCTTTCAAAACTCTACGGAATTGGTGTCTTTGGTGTCTCATTTATAGCTGGGACACCAATGGCATTTTGGTAAATTTAGCACCTTTAATTTGAATTTCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001040014.1
Location 141-491
Gene Name V2
Protein Name movement protein
Coding Region ATGTGGGACCCACTTGTAAACGAGTTCCCAGACTCTGTTCATGGTTTTCGTTGTATGCTTGCTATTAAATATTTGCAGGCCGTGGAAGAAACTTACGAGCCCAATACATTGGGCTACGATTTAATTCGTGATCTTATTTGTGTTATTAGGGCCCGTGATTATGTCGAAGCGACCCGGAGATATAATAATTTCCACACCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTATACCAGCCGTGTTGCTGCCCCCATTGCCCAAGGCACAAGCAGACGTCGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTATCGAATGTACAAAAGTCCTGA
Protein Sequence MWDPLVNEFPDSVHGFRCMLAIKYLQAVEETYEPNTLGYDLIRDLICVIRARDYVEATRRYNNFHTRLEGSSKAELRQPLYQPCCCPHCPRHKQTSIMDVQAHVSKAQDVSNVQKS

NCBI Accession YP_001040015.1
Location 301-1077
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGAGATATAATAATTTCCACACCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTATACCAGCCGTGTTGCTGCCCCCATTGCCCAAGGCACAAGCAGACGTCGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTATCGAATGTACAAAAGTCCTGATGTTCCTCGTGGTTGTGAAGGGCCATGTAAGGTCCAGTCGTATGAGCAGAGGGATGATGTCAAGCACACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTATTAAGTCGATATATATCTTAGGTAAGATCTGGATGGATGACAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTACGGCTCGGCTCCAATGGATTTTGGACAGGTGTTTAATATGTTTGATAATGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGGGACAGATATCAGGTCATGAGGAAATTTCATTCAACTGTAGTTGGTGGACCCTCTGGATCGAAGGAGCAGGCATTAGTTAAGAGGTTTTTTAGGATTAATAGCCATGTAACTTATAATCATCAGGAGGCAGCTAAGTATGAGAACCATACTGAGAATGCCTTATTATTGTATATGGCATGTACTCATGCGTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTATTTCTATGATTCGGTCAGTAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTSRVAAPIAQGTSRRRSWTYRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDDNIKKQNHTNQVMFFLVRDRRPYGSAPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHSTVVGGPSGSKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_001040016.1
Location 1534-2661
Gene Name C1
Protein Name replication associated protein
Coding Region ATGAGACACCAAAGACACCAATTCCGTAGAGTTTTGAAAGACACCAATATGCCTCGTCAACCAGGTTTTAGAGTGTCAGCTAAAAATATCTTCCTTACATATCCCAAATGCTCTCTTTCTAAAGAAATAGCTCTTGAGCTATTAAAGGCAATAAAATGCCCATCTGATAAATTATTTATCAGAGTTAGCCAGGAAAAACACCAGGATGGGTCTCTGCACCTCCATGCTCTCATCCAGTTCAAGGGTAAAGCCCAATTTAAAAACCCCAGACATTTCGACCTTCAACACCCCACCAGCTCCTCCCAATTCCATCCAAATTTCCAGGGAGCTAAATCCTCATCAGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTACTTTTCAGGTCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGATGCGGCAGCGGATGCCTTAAATGCAGGTAGTAAAGACGCTGCTTTGCAAATCATAAGGGAGAAACTCCCTGAAAAATTTATTTTTCAGTATCATAATTTAGTTAGTAATTTAGATAGGATTTTTCAGGAGCCTCCGGCTCCTTATATTTCTCCTTTTCTTTGTTCTTCTTTCAATCAAGTTCCGGAAGAACTTGAAGTCTGGGCGGCTGAAAACGTGATGGGTGCCGCTGCGCGGCCTTGGAGACCGATTAGTATTGTGATAGAGGGTGATAGTCGTACAGGCAAGACAATGTGGGCCAGGTCATTAGGACCCCACAATTACCTATGCGGGCATCTGGACCTGAGTCCAAAAGTGTACTCCAATGATGCATGGTATAACGTCATTGATGACGTTGATCCGCACTACCTGAAGCACTTTAAGGAGTTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCCTCGTATAAAGAGTATCTAGACGAGGAAAAGAATACACCACTAAAAGACTGGGCCTTCAAGAATGCCACCTTCATCACCCTCCACGAGCCACTCTTCACAAGTACCAATCAAGGTCCAACACCGCATAGCGAAAACGAGAGCAGTCAGACGTAA
Protein Sequence MRHQRHQFRRVLKDTNMPRQPGFRVSAKNIFLTYPKCSLSKEIALELLKAIKCPSDKLFIRVSQEKHQDGSLHLHALIQFKGKAQFKNPRHFDLQHPTSSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGTFQVDGRSARGGQQTANDAAADALNAGSKDAALQIIREKLPEKFIFQYHNLVSNLDRIFQEPPAPYISPFLCSSFNQVPEELEVWAAENVMGAAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNTPLKDWAFKNATFITLHEPLFTSTNQGPTPHSENESSQT

References More References in PubMed

1

Tomato leaf curl Mahé virus: a novel tomato-infecting monopartite begomovirus from the Seychelles.

Scussel S, et al.  Arch Virol. 2018 Dec;163(12):3451-3453. doi: 10.1007/s00705-018-4007-3. Epub 2018 Sep 3.

PMID: 30178119

2

A new silverleaf-inducing biotype Ms of Bemisia tabaci (Hemiptera: Aleyrodidae) indigenous to the islands of the south-west Indian Ocean.

Delatte H, et al.  Bull Entomol Res. 2005 Feb;95(1):29-35. doi: 10.1079/ber2004337.

PMID: 15705212