Tomato leaf curl Rajasthan virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002824245.1 |
| Isolate |
India: Rajasthan |
| Release date |
2018/8/25 |
| Submitter |
Sivalingam,P.N., Malathi,V.G., Varma,A. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTGTGGGTCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTATTGGTCCCTTATTTAAACTTCGTCCCCAAGTAGTTTCTTTTGCACTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGAATTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAAAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGCGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATCAGTGATGTCACTCGCGGTACTGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAATAGTGTCATGTTTTTTCTTGTTCGTGACCGACGTCCTGTTGATAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATATGCACAGAGATCGTTATCAAGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCAAGTTTTATATCATATGAAGTCCATACATCAATTGTTCGCTCCAATACATTATCTAATACATGATAAACTGCCCTTATTACATTATAAATTCCTATGACACCTAACCTATCCAGGTACTTAAGGACCTGGGTCTTAAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTGGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGAATCTTGATTATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCGAATTTCCCAAGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGGCAGTTGATCGACACGTAATACGAACAACCACACGGAAGATCAACTCGCCTCCTGCGAATGCTCTTCTTCTTCTTCTGGGGGAGCGATGTTTTCGCGACCGGAATAGAGTGGTTCTTCGAGTGTGATGAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCATTTTTTTCTTCGTCCAGATATTCCTTATAGCTGCTGTTTGGACCATTATTGCACATGAAGATAGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTGTTATACACCTTTGGGCTTAGATCTAGATGTCCACACAAGTAATTGTGTGGGCCTAAACAACGAGCCCACATTGTTTTGCCCGTTCTACTATCCCCCTCTATGACTATGCTTATGGGCCGAAAAGGCCGCGCAGCGGCACACACCACATTTGACGAGACCCAATCGACGAGTTCAGGAGGAACTCTGTCGAAGGAAGAAATTGAAAATGGAGAAACATAAACCTCAGAAGGAGGCTGAAAAATGCGATCTAAATTACTAATTAAATTGTGAAACTGCAGAACATAATCTTTTGGGGCTAATTCCTTTAATACTTTCAATGCATCGTCTTTATTTCCCATGTTAATCGCCTTCGCATATGCATCGTTGGCCGTCTGCTGACCACCACGAGCAGATCGTCCATCGATTTGGAAAACACCCCATTCTAGAACGTCTCCATCTTTGTCGATATATGCTTTGACGTCCGATGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGAAACCAAGTCGAAGAATCTGTTATTTTTGCACTGGTATTTCCCTTCGAATTGGATGAGGACGTGGATATGCGGAGACCCATCCTCGTGAAGCTCTCGACAGATCTTGATGAATTTCTTCGAAGTCGGGGTTTCTAGGGTTTGCAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACCTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGCTGCCATATTGACTTGGTCAATTGGTGTCTCTCAACTCTTTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCTAATTGCATAAATGTAAATATTTTACTTTAATTCAAAATCTTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009506539.1
|
|
Location
|
144-500 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGAATTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAAAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAVKYLQLAEKNYSPDTLGYDLIRDLISVIRAKNYVEATSRYNHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP |
|
NCBI Accession
|
YP_009506540.1
|
|
Location
|
295-852 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 protein |
|
Coding Region
|
ATGCCACTTCCTCAACACTTGATAACGATCTCTGTGCATATTCTTCACAGTAGCAGTGCTAGGCTCGTTGTCAAACATATTGAACACCTCTCCAAAGTCTTGTGGCTTATCAACAGGACGTCGGTCACGAACAAGAAAAAACATGACACTATTCGTGTGATTCTTGGTCTTGATGTTCTCATCCATCCATATCTTCCCCAAAACGTAAACAGACTTAACACAAAAACGCTTACCAACTCTATGGGTCAGCCCAGTACCGCGAGTGACATCACTGATACACATGACCTTACCTATATGGACTACATCGTGTCTGGACTCAAACGACTGGACCTTACATGGGCCTTCGCATCCTCTAGGGACATCTGGACTTCTGTACATCCTGTACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATACGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTTTTAG |
|
Protein Sequence
|
MPLPQHLITISVHILHSSSARLVVKHIEHLSKVLWLINRTSVTNKKKHDTIRVILGLDVLIHPYLPQNVNRLNTKTLTNSMGQPSTASDITDTHDLTYMDYIVSGLKRLDLTWAFASSRDIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIRAVEVETAAYLRSGRGNDYICWSLRHNF |
|
NCBI Accession
|
YP_009506541.1
|
|
Location
|
304-1074 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGCGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATCAGTGATGTCACTCGCGGTACTGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAATAGTGTCATGTTTTTTCTTGTTCGTGACCGACGTCCTGTTGATAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATATGCACAGAGATCGTTATCAAGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_009506542.1
|
|
Location
|
1071-1481 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACTTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCCAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAAGACCCAGGTCCTTAAGTACCTGGATAGGTTAGGTGTCATAGGAATTTATAATGTAATAAGGGCAGTTTATCATGTATTAGATAATGTATTGGAGCGAACAATTGATGTATGGACTTCATATGATATAAAACTTGATATTTATTAA |
|
Protein Sequence
|
MITDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDRLGVIGIYNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY |
|
NCBI Accession
|
YP_009506543.1
|
|
Location
|
1216-1620 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcription activator protein |
|
Coding Region
|
ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTTCCGTGTGGTTGTTCGTATTACGTGTCGATCAACTGCCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACTTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCCAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAA |
|
Protein Sequence
|
MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSINCHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQPAESPGTSQVFSNFPNLDGLTPSDWDFLESL |
|
NCBI Accession
|
YP_009506544.1
|
|
Location
|
1523-2608 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAGGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTGCAAACCCTAGAAACCCCGACTTCGAAGAAATTCATCAAGATCTGTCGAGAGCTTCACGAGGATGGGTCTCCGCATATCCACGTCCTCATCCAATTCGAAGGGAAATACCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCATCGGACGTCAAAGCATATATCGACAAAGATGGAGACGTTCTAGAATGGGGTGTTTTCCAAATCGATGGACGATCTGCTCGTGGTGGTCAGCAGACGGCCAACGATGCATATGCGAAGGCGATTAACATGGGAAATAAAGACGATGCATTGAAAGTATTAAAGGAATTAGCCCCAAAAGATTATGTTCTGCAGTTTCACAATTTAATTAGTAATTTAGATCGCATTTTTCAGCCTCCTTCTGAGGTTTATGTTTCTCCATTTTCAATTTCTTCCTTCGACAGAGTTCCTCCTGAACTCGTCGATTGGGTCTCGTCAAATGTGGTGTGTGCCGCTGCGCGGCCTTTTCGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGAACGGGCAAAACAATGTGGGCTCGTTGTTTAGGCCCACACAATTACTTGTGTGGACATCTAGATCTAAGCCCAAAGGTGTATAACAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCCCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACGAAGTACGGAAAGCCAGTCATGATTAAAGGTGGAATTCCCACTATCTTCATGTGCAATAATGGTCCAAACAGCAGCTATAAGGAATATCTGGACGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA |
|
Protein Sequence
|
MAAPNRFKINAKNYFLTYPRCSLTKEEALSQLQTLETPTSKKFIKICRELHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINMGNKDDALKVLKELAPKDYVLQFHNLISNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFMCNNGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPPEEEEEHSQEAS |
|
NCBI Accession
|
YP_009506545.1
|
|
Location
|
2275-2451 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCCGCATATCCACGTCCTCATCCAATTCGAAGGGAAATACCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCATCGGACGTCAAAGCATATATCGACAAAGATGGAGACGTTCTAG |
|
Protein Sequence
|
MGLRISTSSSNSKGNTSAKITDSSTWFPQVGQHISIRTFRELNRHRTSKHISTKMETF |