Tomato leaf curl Rajasthan virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_002824245.1 |
| Isolate | India: Rajasthan |
| Release date | 2018/8/25 |
| Submitter | Sivalingam,P.N., Malathi,V.G., Varma,A. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038472
ACCGGATGGCCGCGATTTTTTTTGTGGGTCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTATTGGTCCCTTATTTAAACTTCGTCCCCAAGTAGTTTCTTTTGCACTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGAATTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAAAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGCGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATCAGTGATGTCACTCGCGGTACTGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAATAGTGTCATGTTTTTTCTTGTTCGTGACCGACGTCCTGTTGATAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATATGCACAGAGATCGTTATCAAGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCAAGTTTTATATCATATGAAGTCCATACATCAATTGTTCGCTCCAATACATTATCTAATACATGATAAACTGCCCTTATTACATTATAAATTCCTATGACACCTAACCTATCCAGGTACTTAAGGACCTGGGTCTTAAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTGGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGAATCTTGATTATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCGAATTTCCCAAGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGGCAGTTGATCGACACGTAATACGAACAACCACACGGAAGATCAACTCGCCTCCTGCGAATGCTCTTCTTCTTCTTCTGGGGGAGCGATGTTTTCGCGACCGGAATAGAGTGGTTCTTCGAGTGTGATGAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCATTTTTTTCTTCGTCCAGATATTCCTTATAGCTGCTGTTTGGACCATTATTGCACATGAAGATAGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTGTTATACACCTTTGGGCTTAGATCTAGATGTCCACACAAGTAATTGTGTGGGCCTAAACAACGAGCCCACATTGTTTTGCCCGTTCTACTATCCCCCTCTATGACTATGCTTATGGGCCGAAAAGGCCGCGCAGCGGCACACACCACATTTGACGAGACCCAATCGACGAGTTCAGGAGGAACTCTGTCGAAGGAAGAAATTGAAAATGGAGAAACATAAACCTCAGAAGGAGGCTGAAAAATGCGATCTAAATTACTAATTAAATTGTGAAACTGCAGAACATAATCTTTTGGGGCTAATTCCTTTAATACTTTCAATGCATCGTCTTTATTTCCCATGTTAATCGCCTTCGCATATGCATCGTTGGCCGTCTGCTGACCACCACGAGCAGATCGTCCATCGATTTGGAAAACACCCCATTCTAGAACGTCTCCATCTTTGTCGATATATGCTTTGACGTCCGATGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGAAACCAAGTCGAAGAATCTGTTATTTTTGCACTGGTATTTCCCTTCGAATTGGATGAGGACGTGGATATGCGGAGACCCATCCTCGTGAAGCTCTCGACAGATCTTGATGAATTTCTTCGAAGTCGGGGTTTCTAGGGTTTGCAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACCTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGCTGCCATATTGACTTGGTCAATTGGTGTCTCTCAACTCTTTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCTAATTGCATAAATGTAAATATTTTACTTTAATTCAAAATCTTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | YP_009506539.1 |
|---|---|
| Location | 144-500 |
| Gene Name | AV2 |
| Protein Name | pre-coat protein |
| Coding Region | ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGAATTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAAAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
| Protein Sequence | MWDPLLNEFPETVHGFRCMLAVKYLQLAEKNYSPDTLGYDLIRDLISVIRAKNYVEATSRYNHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP |
| NCBI Accession | YP_009506540.1 |
|---|---|
| Location | 295-852 |
| Gene Name | AC5 |
| Protein Name | AC5 protein |
| Coding Region | ATGCCACTTCCTCAACACTTGATAACGATCTCTGTGCATATTCTTCACAGTAGCAGTGCTAGGCTCGTTGTCAAACATATTGAACACCTCTCCAAAGTCTTGTGGCTTATCAACAGGACGTCGGTCACGAACAAGAAAAAACATGACACTATTCGTGTGATTCTTGGTCTTGATGTTCTCATCCATCCATATCTTCCCCAAAACGTAAACAGACTTAACACAAAAACGCTTACCAACTCTATGGGTCAGCCCAGTACCGCGAGTGACATCACTGATACACATGACCTTACCTATATGGACTACATCGTGTCTGGACTCAAACGACTGGACCTTACATGGGCCTTCGCATCCTCTAGGGACATCTGGACTTCTGTACATCCTGTACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATACGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTTTTAG |
| Protein Sequence | MPLPQHLITISVHILHSSSARLVVKHIEHLSKVLWLINRTSVTNKKKHDTIRVILGLDVLIHPYLPQNVNRLNTKTLTNSMGQPSTASDITDTHDLTYMDYIVSGLKRLDLTWAFASSRDIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIRAVEVETAAYLRSGRGNDYICWSLRHNF |
| NCBI Accession | YP_009506541.1 |
|---|---|
| Location | 304-1074 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGCGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATCAGTGATGTCACTCGCGGTACTGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAATAGTGTCATGTTTTTTCTTGTTCGTGACCGACGTCCTGTTGATAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATATGCACAGAGATCGTTATCAAGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA |
| Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
| NCBI Accession | YP_009506542.1 |
|---|---|
| Location | 1071-1481 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACTTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCCAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAAGACCCAGGTCCTTAAGTACCTGGATAGGTTAGGTGTCATAGGAATTTATAATGTAATAAGGGCAGTTTATCATGTATTAGATAATGTATTGGAGCGAACAATTGATGTATGGACTTCATATGATATAAAACTTGATATTTATTAA |
| Protein Sequence | MITDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDRLGVIGIYNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY |
| NCBI Accession | YP_009506543.1 |
|---|---|
| Location | 1216-1620 |
| Gene Name | AC2 |
| Protein Name | transcription activator protein |
| Coding Region | ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTTCCGTGTGGTTGTTCGTATTACGTGTCGATCAACTGCCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACTTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCCAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAA |
| Protein Sequence | MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSINCHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQPAESPGTSQVFSNFPNLDGLTPSDWDFLESL |
| NCBI Accession | YP_009506544.1 |
|---|---|
| Location | 1523-2608 |
| Gene Name | AC1 |
| Protein Name | replication initiator protein |
| Coding Region | ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAGGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTGCAAACCCTAGAAACCCCGACTTCGAAGAAATTCATCAAGATCTGTCGAGAGCTTCACGAGGATGGGTCTCCGCATATCCACGTCCTCATCCAATTCGAAGGGAAATACCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCATCGGACGTCAAAGCATATATCGACAAAGATGGAGACGTTCTAGAATGGGGTGTTTTCCAAATCGATGGACGATCTGCTCGTGGTGGTCAGCAGACGGCCAACGATGCATATGCGAAGGCGATTAACATGGGAAATAAAGACGATGCATTGAAAGTATTAAAGGAATTAGCCCCAAAAGATTATGTTCTGCAGTTTCACAATTTAATTAGTAATTTAGATCGCATTTTTCAGCCTCCTTCTGAGGTTTATGTTTCTCCATTTTCAATTTCTTCCTTCGACAGAGTTCCTCCTGAACTCGTCGATTGGGTCTCGTCAAATGTGGTGTGTGCCGCTGCGCGGCCTTTTCGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGAACGGGCAAAACAATGTGGGCTCGTTGTTTAGGCCCACACAATTACTTGTGTGGACATCTAGATCTAAGCCCAAAGGTGTATAACAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCCCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACGAAGTACGGAAAGCCAGTCATGATTAAAGGTGGAATTCCCACTATCTTCATGTGCAATAATGGTCCAAACAGCAGCTATAAGGAATATCTGGACGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA |
| Protein Sequence | MAAPNRFKINAKNYFLTYPRCSLTKEEALSQLQTLETPTSKKFIKICRELHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINMGNKDDALKVLKELAPKDYVLQFHNLISNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFMCNNGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPPEEEEEHSQEAS |
| NCBI Accession | YP_009506545.1 |
|---|---|
| Location | 2275-2451 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGGGTCTCCGCATATCCACGTCCTCATCCAATTCGAAGGGAAATACCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCATCGGACGTCAAAGCATATATCGACAAAGATGGAGACGTTCTAG |
| Protein Sequence | MGLRISTSSSNSKGNTSAKITDSSTWFPQVGQHISIRTFRELNRHRTSKHISTKMETF |
References More References in PubMed
| 1 |
Diverse begomovirus-betasatellite complexes cause tomato leaf curl disease in the western India. Sangeeta, et al. Virus Res. 2023 Apr 15;328:199079. doi: 10.1016/j.virusres.2023.199079. Epub 2023 Mar 3. PMID: 36813240 |
|---|---|
| 2 |
George B, et al. Virus Genes. 2014 Apr;48(2):397-401. doi: 10.1007/s11262-013-1027-7. Epub 2013 Dec 25. PMID: 24368759 |
| 3 |
Singh J, et al. Front Plant Sci. 2024 Apr 24;15:1373352. doi: 10.3389/fpls.2024.1373352. eCollection 2024. PMID: 38721333 |
| 4 |
Shahid MS, et al. Arch Virol. 2007;152(11):2131-4. doi: 10.1007/s00705-007-1043-9. Epub 2007 Aug 16. PMID: 17703290 |
| 5 |
Iqbal MJ, et al. Virus Res. 2023 Aug;333:199144. doi: 10.1016/j.virusres.2023.199144. Epub 2023 Jun 7. PMID: 37271420 |
| 6 |
Genetic variability of Cotton leaf curl betasatellite in Northern India. Sohrab SS, et al. Saudi J Biol Sci. 2014 Dec;21(6):626-31. doi: 10.1016/j.sjbs.2014.11.006. Epub 2014 Nov 13. PMID: 25473373 |
| 7 |
Kirthi N, et al. Arch Virol. 2004 Oct;149(10):2047-57. doi: 10.1007/s00705-004-0352-5. PMID: 15669112 |
| 8 |
Mishra M, et al. Front Microbiol. 2020 Oct 7;11:512957. doi: 10.3389/fmicb.2020.512957. eCollection 2020. PMID: 33117300 |
| 9 |
A thioredoxin-like protein of Bemisia tabaci interacts with coat protein of begomoviruses. Saurav GK, et al. Virus Genes. 2019 Jun;55(3):356-367. doi: 10.1007/s11262-019-01657-z. Epub 2019 Mar 28. PMID: 30924007 |
| 10 |
Rana VS, et al. Phytopathology. 2019 Aug;109(8):1481-1493. doi: 10.1094/PHYTO-03-18-0082-R. Epub 2019 Jul 5. PMID: 31017531 |