Tomato leaf curl Rajasthan virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824245.1
Isolate India: Rajasthan
Release date 2018/8/25
Submitter Sivalingam,P.N., Malathi,V.G., Varma,A.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038472
ACCGGATGGCCGCGATTTTTTTTGTGGGTCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTATTGGTCCCTTATTTAAACTTCGTCCCCAAGTAGTTTCTTTTGCACTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGAATTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAAAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGCGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATCAGTGATGTCACTCGCGGTACTGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAATAGTGTCATGTTTTTTCTTGTTCGTGACCGACGTCCTGTTGATAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATATGCACAGAGATCGTTATCAAGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCAAGTTTTATATCATATGAAGTCCATACATCAATTGTTCGCTCCAATACATTATCTAATACATGATAAACTGCCCTTATTACATTATAAATTCCTATGACACCTAACCTATCCAGGTACTTAAGGACCTGGGTCTTAAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTGGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGAATCTTGATTATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCGAATTTCCCAAGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGGCAGTTGATCGACACGTAATACGAACAACCACACGGAAGATCAACTCGCCTCCTGCGAATGCTCTTCTTCTTCTTCTGGGGGAGCGATGTTTTCGCGACCGGAATAGAGTGGTTCTTCGAGTGTGATGAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCATTTTTTTCTTCGTCCAGATATTCCTTATAGCTGCTGTTTGGACCATTATTGCACATGAAGATAGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGGGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTGTTATACACCTTTGGGCTTAGATCTAGATGTCCACACAAGTAATTGTGTGGGCCTAAACAACGAGCCCACATTGTTTTGCCCGTTCTACTATCCCCCTCTATGACTATGCTTATGGGCCGAAAAGGCCGCGCAGCGGCACACACCACATTTGACGAGACCCAATCGACGAGTTCAGGAGGAACTCTGTCGAAGGAAGAAATTGAAAATGGAGAAACATAAACCTCAGAAGGAGGCTGAAAAATGCGATCTAAATTACTAATTAAATTGTGAAACTGCAGAACATAATCTTTTGGGGCTAATTCCTTTAATACTTTCAATGCATCGTCTTTATTTCCCATGTTAATCGCCTTCGCATATGCATCGTTGGCCGTCTGCTGACCACCACGAGCAGATCGTCCATCGATTTGGAAAACACCCCATTCTAGAACGTCTCCATCTTTGTCGATATATGCTTTGACGTCCGATGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGACTTGGGGAAACCAAGTCGAAGAATCTGTTATTTTTGCACTGGTATTTCCCTTCGAATTGGATGAGGACGTGGATATGCGGAGACCCATCCTCGTGAAGCTCTCGACAGATCTTGATGAATTTCTTCGAAGTCGGGGTTTCTAGGGTTTGCAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACCTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGCTGCCATATTGACTTGGTCAATTGGTGTCTCTCAACTCTTTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCTAATTGCATAAATGTAAATATTTTACTTTAATTCAAAATCTTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506539.1
Location 144-500
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGAATTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAAAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLAEKNYSPDTLGYDLIRDLISVIRAKNYVEATSRYNHFHARFEGTPPSQLRQPVCEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP

NCBI Accession YP_009506540.1
Location 295-852
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGCCACTTCCTCAACACTTGATAACGATCTCTGTGCATATTCTTCACAGTAGCAGTGCTAGGCTCGTTGTCAAACATATTGAACACCTCTCCAAAGTCTTGTGGCTTATCAACAGGACGTCGGTCACGAACAAGAAAAAACATGACACTATTCGTGTGATTCTTGGTCTTGATGTTCTCATCCATCCATATCTTCCCCAAAACGTAAACAGACTTAACACAAAAACGCTTACCAACTCTATGGGTCAGCCCAGTACCGCGAGTGACATCACTGATACACATGACCTTACCTATATGGACTACATCGTGTCTGGACTCAAACGACTGGACCTTACATGGGCCTTCGCATCCTCTAGGGACATCTGGACTTCTGTACATCCTGTACATCCTGGGCTTTCTGTTCATGGGCCTGTTCGCCCATGCTTTTGCTTTGGTGACGCGGACAATGGGGGCAGCAGCACGGCTCACATACGGGCTGTCGAAGTTGAGACGGCGGCGTACCTTCGAAGCGGGCGTGGAAATGATTATATCTGCTGGTCGCTTCGACATAATTTTTAG
Protein Sequence MPLPQHLITISVHILHSSSARLVVKHIEHLSKVLWLINRTSVTNKKKHDTIRVILGLDVLIHPYLPQNVNRLNTKTLTNSMGQPSTASDITDTHDLTYMDYIVSGLKRLDLTWAFASSRDIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIRAVEVETAAYLRSGRGNDYICWSLRHNF

NCBI Accession YP_009506541.1
Location 304-1074
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCGTATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGCGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGTAAGGTCATGTGTATCAGTGATGTCACTCGCGGTACTGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAATAGTGTCATGTTTTTTCTTGTTCGTGACCGACGTCCTGTTGATAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTGAAGAATATGCACAGAGATCGTTATCAAGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009506542.1
Location 1071-1481
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACTTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCCAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAAGACCCAGGTCCTTAAGTACCTGGATAGGTTAGGTGTCATAGGAATTTATAATGTAATAAGGGCAGTTTATCATGTATTAGATAATGTATTGGAGCGAACAATTGATGTATGGACTTCATATGATATAAAACTTGATATTTATTAA
Protein Sequence MITDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPQIGIFLRVFKTQVLKYLDRLGVIGIYNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY

NCBI Accession YP_009506543.1
Location 1216-1620
Gene Name AC2
Protein Name transcription activator protein
Coding Region ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTTCCGTGTGGTTGTTCGTATTACGTGTCGATCAACTGCCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACTTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCCAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAA
Protein Sequence MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYVSINCHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQPAESPGTSQVFSNFPNLDGLTPSDWDFLESL

NCBI Accession YP_009506544.1
Location 1523-2608
Gene Name AC1
Protein Name replication initiator protein
Coding Region ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAGGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTGCAAACCCTAGAAACCCCGACTTCGAAGAAATTCATCAAGATCTGTCGAGAGCTTCACGAGGATGGGTCTCCGCATATCCACGTCCTCATCCAATTCGAAGGGAAATACCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCATCGGACGTCAAAGCATATATCGACAAAGATGGAGACGTTCTAGAATGGGGTGTTTTCCAAATCGATGGACGATCTGCTCGTGGTGGTCAGCAGACGGCCAACGATGCATATGCGAAGGCGATTAACATGGGAAATAAAGACGATGCATTGAAAGTATTAAAGGAATTAGCCCCAAAAGATTATGTTCTGCAGTTTCACAATTTAATTAGTAATTTAGATCGCATTTTTCAGCCTCCTTCTGAGGTTTATGTTTCTCCATTTTCAATTTCTTCCTTCGACAGAGTTCCTCCTGAACTCGTCGATTGGGTCTCGTCAAATGTGGTGTGTGCCGCTGCGCGGCCTTTTCGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGAACGGGCAAAACAATGTGGGCTCGTTGTTTAGGCCCACACAATTACTTGTGTGGACATCTAGATCTAAGCCCAAAGGTGTATAACAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCCCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACGAAGTACGGAAAGCCAGTCATGATTAAAGGTGGAATTCCCACTATCTTCATGTGCAATAATGGTCCAAACAGCAGCTATAAGGAATATCTGGACGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA
Protein Sequence MAAPNRFKINAKNYFLTYPRCSLTKEEALSQLQTLETPTSKKFIKICRELHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINMGNKDDALKVLKELAPKDYVLQFHNLISNLDRIFQPPSEVYVSPFSISSFDRVPPELVDWVSSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFMCNNGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPPEEEEEHSQEAS

NCBI Accession YP_009506545.1
Location 2275-2451
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCGCATATCCACGTCCTCATCCAATTCGAAGGGAAATACCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCATCGGACGTCAAAGCATATATCGACAAAGATGGAGACGTTCTAG
Protein Sequence MGLRISTSSSNSKGNTSAKITDSSTWFPQVGQHISIRTFRELNRHRTSKHISTKMETF

References More References in PubMed

1

Diverse begomovirus-betasatellite complexes cause tomato leaf curl disease in the western India.

Sangeeta, et al.  Virus Res. 2023 Apr 15;328:199079. doi: 10.1016/j.virusres.2023.199079. Epub 2023 Mar 3.

PMID: 36813240

2

Molecular characterization of Chilli leaf curl virus and satellite molecules associated with leaf curl disease of Amaranthus spp.

George B, et al.  Virus Genes. 2014 Apr;48(2):397-401. doi: 10.1007/s11262-013-1027-7. Epub 2013 Dec 25.

PMID: 24368759

3

Complete nucleotide sequences of cotton leaf curl Rajasthan virus and its associated DNA beta molecule infecting tomato.

Shahid MS, et al.  Arch Virol. 2007;152(11):2131-4. doi: 10.1007/s00705-007-1043-9. Epub 2007 Aug 16.

PMID: 17703290

4

Genetic variability of Cotton leaf curl betasatellite in Northern India.

Sohrab SS, et al.  Saudi J Biol Sci. 2014 Dec;21(6):626-31. doi: 10.1016/j.sjbs.2014.11.006. Epub 2014 Nov 13.

PMID: 25473373

5

Sentinel plot surveillance of cotton leaf curl disease in Pakistan- a case study at the cultivated cotton-wild host plant interface.

Iqbal MJ, et al.  Virus Res. 2023 Aug;333:199144. doi: 10.1016/j.virusres.2023.199144. Epub 2023 Jun 7.

PMID: 37271420

6

A thioredoxin-like protein of Bemisia tabaci interacts with coat protein of begomoviruses.

Saurav GK, et al.  Virus Genes. 2019 Jun;55(3):356-367. doi: 10.1007/s11262-019-01657-z. Epub 2019 Mar 28.

PMID: 30924007

7

Genetic variability of begomoviruses associated with cotton leaf curl disease originating from India.

Kirthi N, et al.  Arch Virol. 2004 Oct;149(10):2047-57. doi: 10.1007/s00705-004-0352-5.

PMID: 15669112

8

Biology and Interaction of the Natural Occurrence of Distinct Monopartite Begomoviruses Associated With Satellites in Capsicum annum From India.

Mishra M, et al.  Front Microbiol. 2020 Oct 7;11:512957. doi: 10.3389/fmicb.2020.512957. eCollection 2020.

PMID: 33117300

9

Implication of the Whitefly, Bemisia tabaci, Collagen Protein in Begomoviruses Acquisition and Transmission.

Rana VS, et al.  Phytopathology. 2019 Aug;109(8):1481-1493. doi: 10.1094/PHYTO-03-18-0082-R. Epub 2019 Jul 5.

PMID: 31017531

10

Genome of a known but distinct begomovirus associated with a novel satellite molecule infecting a new host bitter gourd (Momordica charantia).

Muthupandi K, et al.  3 Biotech. 2019 Jun;9(6):247. doi: 10.1007/s13205-019-1775-8. Epub 2019 Jun 3.

PMID: 31168440