Tomato leaf curl purple vein virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002270925.1 |
| Isolate |
Brazil |
| Release date |
2017/8/26 |
| Submitter |
Macedo,M.A., Albuquerque,L., Souza,J., Maliano,M., Rojas,M., Gilbertson,R., Inoue Nagata,A. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCGACCCGCTCCCGTGATTTGCGGCGCTTTGTCGTTTAAAAGTGGTCCCCACGCTGAAAACGACAAAATTGAACATCCAATCATAATTGAGCCTGAAAGCTTAGATATTTGAAATAGTCCTTGGTGGCTACGTTTGTACCTGTATAAAAAGACGAACGTCATACGGTCCCATCAGGCTTTAACTCAAAATGAGTAAGCGGGCAGCCCCATGGCGTTCCTTCGCGGGAATGTCAAAGGTACAGCGCTCCCTCAATTTTTCTCCTCGTTCGGGAACTGGGCCGAAATTAGACAGTCGGTCTGCTTGGGTCAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACTTTGAGAAGTCCGGATGTTCCCAAGGGGTGTGAAGGCCCTTGCAAGGTCCAGTCCTATGAACAGAGGCATGATATCTCTCACGTGGGGAAGGTCATGTGCATCTCTGACGTGACGCGTGGGAATGGCATTACCCACCGCGTGGGTAAGAGGTTCTGCGTGAAGTCTGTGTACATATTAGGGAAGGTGTGGATGGACGAGAATATCAAGCTGAAGAATCACACGAACAGTGTGATGTTCTGGCTTGTCAGAGACAGGAGACCCTATGGAACGCCCATGGACTTTGGGCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTCCGTGATCGTTTTCAGGTTCTGCACAAGTTCTACTCGAAGGTTACCGGTGGACAATATGCCAGCAACGAGCAGGCCCTGGTACGGCGTTTTTGGAGGGTGAACACCCATGTGACCTACAACCACCAGGAGGCCGCGAAGTACGAGAACCACACGGAGAATGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTCAAGATACGGATCTATTTTTATGATTCGATATCTAATTAATAAATATTATATTTTATTGAATGATTTTCGAGTACATGATTTACATACACTCTGTCCGTAGCAAACCTAACGGCTCTAATTACATTATTAATTGAAATGACTCCTAACTGATCTAAGTACAATAAAACTAAAAATCTAAATCTACTTAAATAAATCGTCCCAGAAGCCGTCAGATAACTGGTCCAGACTTGGAAGTTGAGGAAGGCTTTGTGGAGATCCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATTTGGATGTGGTAGATCCTGGTTGTTGTGTAGAGTGGATCCTCCACGTGTGTTATCTTGAAATACAGGGGATTGCTGAGCTGCCAGATAAACACGCCATTCTCTGCCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTTGTGGCAGTTGATGTGTACGAATATGGAACACCCGCAGTTCAGATCTATCCTTCTCCTCCTAATCGCCCTCTTCTTGGCCGCCCTGTGATGGACTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTATGGAGGGTCCAGTTCTTTAGAGAAACATTCTCTTGTTTCTCCAAAAAGTCCTTATAACTAGACCCTTCTCCTGGATTGCAGAGCACGATTGAGGGTATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTACAATTTGACTGCCAGTCCCTTTGGGCCCCAATCAGCTCTTTCCAGTGCTTCATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTATACTCCGCATCATTTGAGTAAACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGGGATCCTAGAGAACGGGCCCACATCGTCTTCCCCGTCCTTGAATCACCCTCGATGATTATACTAATAGGTCTTTCTGGCCGCGCAGCGGCATCCCTACCCAAATAATCATCAGCCCACTCTTGCATCTCCTCCGGAACGTTAGTGAAGGAGGAGAGGGGAAACGGAGGAGCCCAAGGCTCCGGAGCCTTCTGGAAAATGCGTTGCGCATTTGCCACGAGGTTGTGGTGTTGGAGGAAGAAGTGTTGTGGTTGTTCCTCCTTTATTATTTGGAGGGCTTCTTCTGCTGACGATGCATTTAACGCCTTGGCATATGTATCGTTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCGTCGATCTGAAAATCACCCCACTCGACGTAATCTCCGTCCTTCTCAATGTATGATTTGGCGTCTGAGGAGGACTTGCAAGATTCGTATTTTCCATGACAAACATTGGAATTACTGGGATGTCGCAAGTCGAAGAATCTGCAATTCGTGCAGACGAACTTGGCTTCGAATTGCAGCAGGGCATGCAGATGAGGTTCCCCATTATCATGTAGCTCTCTGCAGACTCTGATATATTTTTTGTTGACTGGGGTTTCTAGGGCTTGCAATTGGGAAAGTGCCTCTTCTTTCGAAATAGAGCATTTGGGATAAGTGAGGAAATAGTTTTTGGAAGAAATACGGAATCGTTTTGGTGGTGGCATTTTTGTAATAACAAGGGTGTCACCGATTGAGATTCAGGTAAACTTGCGGAATGAATTGGTGACTAGTGACAATTTATAGTAGAATCCTCAATAGAACTCCGAATCATGTTCGCACACGTGGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009408629.1
|
|
Location
|
206-961 |
|
Gene Name
|
CP |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGTAAGCGGGCAGCCCCATGGCGTTCCTTCGCGGGAATGTCAAAGGTACAGCGCTCCCTCAATTTTTCTCCTCGTTCGGGAACTGGGCCGAAATTAGACAGTCGGTCTGCTTGGGTCAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACTTTGAGAAGTCCGGATGTTCCCAAGGGGTGTGAAGGCCCTTGCAAGGTCCAGTCCTATGAACAGAGGCATGATATCTCTCACGTGGGGAAGGTCATGTGCATCTCTGACGTGACGCGTGGGAATGGCATTACCCACCGCGTGGGTAAGAGGTTCTGCGTGAAGTCTGTGTACATATTAGGGAAGGTGTGGATGGACGAGAATATCAAGCTGAAGAATCACACGAACAGTGTGATGTTCTGGCTTGTCAGAGACAGGAGACCCTATGGAACGCCCATGGACTTTGGGCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTCCGTGATCGTTTTCAGGTTCTGCACAAGTTCTACTCGAAGGTTACCGGTGGACAATATGCCAGCAACGAGCAGGCCCTGGTACGGCGTTTTTGGAGGGTGAACACCCATGTGACCTACAACCACCAGGAGGCCGCGAAGTACGAGAACCACACGGAGAATGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTCAAGATACGGATCTATTTTTATGATTCGATATCTAATTAA |
|
Protein Sequence
|
MSKRAAPWRSFAGMSKVQRSLNFSPRSGTGPKLDSRSAWVNRPMYRKPRIYRTLRSPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLHKFYSKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
|
NCBI Accession
|
YP_009408630.1
|
|
Location
|
539-814 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 |
|
Coding Region
|
ATGGGTGTTCACCCTCCAAAAACGCCGTACCAGGGCCTGCTCGTTGCTGGCATATTGTCCACCGGTAACCTTCGAGTAGAACTTGTGCAGAACCTGAAAACGATCACGGAGATCGTTCTTCACGGTGGCAGTACTGGGCTCATTGTCGAACATGTTGAACACCTGCCCAAAGTCCATGGGCGTTCCATAGGGTCTCCTGTCTCTGACAAGCCAGAACATCACACTGTTCGTGTGATTCTTCAGCTTGATATTCTCGTCCATCCACACCTTCCCTAA |
|
Protein Sequence
|
MGVHPPKTPYQGLLVAGILSTGNLRVELVQNLKTITEIVLHGGSTGLIVEHVEHLPKVHGRSIGSPVSDKPEHHTVRVILQLDILVHPHLP |
|
NCBI Accession
|
YP_009408631.1
|
|
Location
|
958-1356 |
|
Gene Name
|
REn |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTTTATCTGGCAGCTCAGCAATCCCCTGTATTTCAAGATAACACACGTGGAGGATCCACTCTACACAACAACCAGGATCTACCACATCCAAATACGGTTCAACCACAACCTGAGGAAAGCGTTGGATCTCCACAAAGCCTTCCTCAACTTCCAAGTCTGGACCAGTTATCTGACGGCTTCTGGGACGATTTATTTAAGTAGATTTAGATTTTTAGTTTTATTGTACTTAGATCAGTTAGGAGTCATTTCAATTAATAATGTAATTAGAGCCGTTAGGTTTGCTACGGACAGAGTGTATGTAAATCATGTACTCGAAAATCATTCAATAAAATATAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVFIWQLSNPLYFKITHVEDPLYTTTRIYHIQIRFNHNLRKALDLHKAFLNFQVWTSYLTASGTIYLSRFRFLVLLYLDQLGVISINNVIRAVRFATDRVYVNHVLENHSIKYNIY |
|
NCBI Accession
|
YP_009408632.1
|
|
Location
|
1103-1492 |
|
Gene Name
|
TrAP |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAAGTCCATCACAGGGCGGCCAAGAAGAGGGCGATTAGGAGGAGAAGGATAGATCTGAACTGCGGGTGTTCCATATTCGTACACATCAACTGCCACAACAATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTTTATCTGGCAGCTCAGCAATCCCCTGTATTTCAAGATAACACACGTGGAGGATCCACTCTACACAACAACCAGGATCTACCACATCCAAATACGGTTCAACCACAACCTGAGGAAAGCGTTGGATCTCCACAAAGCCTTCCTCAACTTCCAAGTCTGGACCAGTTATCTGACGGCTTCTGGGACGATTTATTTAAGTAG |
|
Protein Sequence
|
MLNSSSSTPPSIKVHHRAAKKRAIRRRRIDLNCGCSIFVHINCHNNGFTHRGTHHCTSGREWRVYLAAQQSPVFQDNTRGGSTLHNNQDLPHPNTVQPQPEESVGSPQSLPQLPSLDQLSDGFWDDLFK |
|
NCBI Accession
|
YP_009408633.1
|
|
Location
|
1419-2489 |
|
Gene Name
|
Rep |
|
Protein Name
|
replication protein |
|
Coding Region
|
ATGCCACCACCAAAACGATTCCGTATTTCTTCCAAAAACTATTTCCTCACTTATCCCAAATGCTCTATTTCGAAAGAAGAGGCACTTTCCCAATTGCAAGCCCTAGAAACCCCAGTCAACAAAAAATATATCAGAGTCTGCAGAGAGCTACATGATAATGGGGAACCTCATCTGCATGCCCTGCTGCAATTCGAAGCCAAGTTCGTCTGCACGAATTGCAGATTCTTCGACTTGCGACATCCCAGTAATTCCAATGTTTGTCATGGAAAATACGAATCTTGCAAGTCCTCCTCAGACGCCAAATCATACATTGAGAAGGACGGAGATTACGTCGAGTGGGGTGATTTTCAGATCGACGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAACGATACATATGCCAAGGCGTTAAATGCATCGTCAGCAGAAGAAGCCCTCCAAATAATAAAGGAGGAACAACCACAACACTTCTTCCTCCAACACCACAACCTCGTGGCAAATGCGCAACGCATTTTCCAGAAGGCTCCGGAGCCTTGGGCTCCTCCGTTTCCCCTCTCCTCCTTCACTAACGTTCCGGAGGAGATGCAAGAGTGGGCTGATGATTATTTGGGTAGGGATGCCGCTGCGCGGCCAGAAAGACCTATTAGTATAATCATCGAGGGTGATTCAAGGACGGGGAAGACGATGTGGGCCCGTTCTCTAGGATCCCACAATTATTTGAGTGGACACCTGGATTTCAATTCTAGGGTTTACTCAAATGATGCGGAGTATAACGTCATTGATGACGTCACTCCGCAATATTTAAAGATGAAGCACTGGAAAGAGCTGATTGGGGCCCAAAGGGACTGGCAGTCAAATTGTAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATACCCTCAATCGTGCTCTGCAATCCAGGAGAAGGGTCTAGTTATAAGGACTTTTTGGAGAAACAAGAGAATGTTTCTCTAAAGAACTGGACCCTCCATAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAAGTCCATCACAGGGCGGCCAAGAAGAGGGCGATTAG |
|
Protein Sequence
|
MPPPKRFRISSKNYFLTYPKCSISKEEALSQLQALETPVNKKYIRVCRELHDNGEPHLHALLQFEAKFVCTNCRFFDLRHPSNSNVCHGKYESCKSSSDAKSYIEKDGDYVEWGDFQIDGRSARGGQQTANDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAQRIFQKAPEPWAPPFPLSSFTNVPEEMQEWADDYLGRDAAARPERPISIIIEGDSRTGKTMWARSLGSHNYLSGHLDFNSRVYSNDAEYNVIDDVTPQYLKMKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKQENVSLKNWTLHNAKFIFLDSPLYQSPSQGGQEEGD |
|
NCBI Accession
|
YP_009408634.1
|
|
Location
|
2075-2338 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGATAATGGGGAACCTCATCTGCATGCCCTGCTGCAATTCGAAGCCAAGTTCGTCTGCACGAATTGCAGATTCTTCGACTTGCGACATCCCAGTAATTCCAATGTTTGTCATGGAAAATACGAATCTTGCAAGTCCTCCTCAGACGCCAAATCATACATTGAGAAGGACGGAGATTACGTCGAGTGGGGTGATTTTCAGATCGACGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAACGATACATATGCCAAGGCGTTAA |
|
Protein Sequence
|
MIMGNLICMPCCNSKPSSSARIADSSTCDIPVIPMFVMENTNLASPPQTPNHTLRRTEITSSGVIFRSTEDLLEEVNRQLTIHMPRR |