Tomato leaf curl Pune virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000868585.1
Isolate India: Pune
Release date 2015/2/13
Submitter Chowda Reddy,R.V., Colvin,J., Muniyappa,V.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_008517
ACCGGATGGCCGCGGTTTTTTCGTGAGGGTCCCGCAGCGCACTAAATGACAATGATGTGTGGACCAATCATATTGCGCACTGAAAGCCTAATTATTGAGTTTGTTCCTATATATACTTGGTGACTAAGTTTGTCCTGTATACATAATGTGGGATCCACTATTAAATGATTTTCCTGAAACCGTACACGGGTTTAGGTGTATGCTTGCTATAAAATACTTGCATTTGATAGAAAATACGTACTCACCCGATTCATTGGGATACGATCTTATACGTGATTTAATTTCTGTTGTTAGGGCAAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGTCCCGTCTCGAAATATCGCCGACTTCTGACCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAAAATGTACAGAAGTCCGGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCTTTTGAGTCCAGACACGACGTAGTGCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACCGGTTTAACCCATAGGGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATTAAGACTAAGAATCACACTAACAGTGTCATGTTCTTCCTTGTTCGTGACCGTCGTCCTGTTGATAAGCCACAAGACTTCGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGTACGGCTACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTAAGAAAGTGGCATGCAACGGTCACTGGGGGACAATATGCTTCAAAAGAACAGGCGTTAGTTAAGAAGTTTGTTAGGGTTAATAACTATGTTGTGTATAACCAGCAAGAGGCTGGTAAATATGAAAATCATTCTGAGAATGCTTTGATGTTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAACTGATATTAATAAAGATTAAATTTTATTAAATATGATTGTTCTACGTATACAATGTGATGTAATACATTCCATAACACATAATCAACTGCTCCATTTACATTATTAATGCTGATAATGCCTAAATTATGTAAAAACTTAAATACTTGGGTCTTAAAGACCCTTAAAAAATGACCAGTCTGAGGCTGTGAGGTCGTCCAGATTTGTAGACTTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAATTGTACTTGGACGGTGATGATATCTCTGTTCATCAGGAATGGTCGGTTGTGGTGTTTTGTTATCTTGAAATATAGGGGATTTGGAATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTAATGGGTTCCCCTGTGCGTAAATCCATTGTCGTGACAGGCTAACGCTATGAAATATGAACAGCCGCAGGGTAGATCAACTCGTCGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGTTGCACTTTGATAGGAACCTGAGTAGAGTGAGCCTTCGAGGGTGATGAATCTCGCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTATAACTGGAGTTGGGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCAAACATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTGTGTGGTCCAAGTGACCTCGCCCACATCGTCTTCCCCGTCCTACTCTCACCCTCAATCACTATACTTACGGGCCTTAATGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCAGTCTTCGAGTTCCTCTGGAACTCGATCAAATGAAGAAATAGAAAAAGGAGAAATATAAACCTCCACTGGAGGTGTAAAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGCCTTGACGTCTGACGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGATCTTGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTGTGCATTGGAATTTTCCTTCAAATTGGATGAGCACGTGGATATGAGGTTCCCCATTTTCATGAAGCTCTCTACACACTCTAATGAATAATTTAGAAGTTGGAGTTTCTAGTTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGAAAGAGAACATTTAGGGTATGTAAGAAAATAATTTTTAGAATTTATATTAAATCTGCCAGCTCGAGGCATTTGAATCGGTGGACACTCTAATTCTATGCATATCGGTGGAACGGTGGACAATATATACCCTGTCCACCAAATGGCATAATTGTAATTACATTGAAAGTTCTAATCAATTTCCCGGTGATAGCGGCCATCCGATTAATATT

Gene Information

NCBI Accession YP_803218.1
Location 146-502
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTGGGATCCACTATTAAATGATTTTCCTGAAACCGTACACGGGTTTAGGTGTATGCTTGCTATAAAATACTTGCATTTGATAGAAAATACGTACTCACCCGATTCATTGGGATACGATCTTATACGTGATTTAATTTCTGTTGTTAGGGCAAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGTCCCGTCTCGAAATATCGCCGACTTCTGACCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAAAATGTACAGAAGTCCGGATGTTCCTAG
Protein Sequence MWDPLLNDFPETVHGFRCMLAIKYLHLIENTYSPDSLGYDLIRDLISVVRAKNYVQASSRYDHFRSRLEISPTSDLNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQNVQKSGCS

NCBI Accession YP_803219.1
Location 306-1076
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGTCCCGTCTCGAAATATCGCCGACTTCTGACCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAAAATGTACAGAAGTCCGGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCTTTTGAGTCCAGACACGACGTAGTGCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACCGGTTTAACCCATAGGGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATTAAGACTAAGAATCACACTAACAGTGTCATGTTCTTCCTTGTTCGTGACCGTCGTCCTGTTGATAAGCCACAAGACTTCGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGTACGGCTACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTAAGAAAGTGGCATGCAACGGTCACTGGGGGACAATATGCTTCAAAAGAACAGGCGTTAGTTAAGAAGTTTGTTAGGGTTAATAACTATGTTGTGTATAACCAGCAAGAGGCTGGTAAATATGAAAATCATTCTGAGAATGCTTTGATGTTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAACTGA
Protein Sequence MSKRPADMIISGPVSKYRRLLTSISPYSKRAAVRIVRGTKGKEWANRPMNRKPMFYKMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_803220.1
Location 1079-1483
Gene Name AC3
Protein Name replication enhancer
Coding Region ATGGATTTACGCACAGGGGAACCCATTACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCCAAATCCCCTATATTTCAAGATAACAAAACACCACAACCGACCATTCCTGATGAACAGAGATATCATCACCGTCCAAGTACAATTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAAGTCTACAAATCTGGACGACCTCACAGCCTCAGACTGGTCATTTTTTAAGGGTCTTTAAGACCCAAGTATTTAAGTTTTTACATAATTTAGGCATTATCAGCATTAATAATGTAAATGGAGCAGTTGATTATGTGTTATGGAATGTATTACATCACATTGTATACGTAGAACAATCATATTTAATAAAATTTAATCTTTATTAA
Protein Sequence MDLRTGEPITAAQAENGVYIWEIPNPLYFKITKHHNRPFLMNRDIITVQVQFNHNLRKALGIHKCFLSLQIWTTSQPQTGHFLRVFKTQVFKFLHNLGIISINNVNGAVDYVLWNVLHHIVYVEQSYLIKFNLY

NCBI Accession YP_803221.1
Location 1224-1628
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCGAGATTCATCACCCTCGAAGGCTCACTCTACTCAGGTTCCTATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGATCTACCCTGCGGCTGTTCATATTTCATAGCGTTAGCCTGTCACGACAATGGATTTACGCACAGGGGAACCCATTACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCCAAATCCCCTATATTTCAAGATAACAAAACACCACAACCGACCATTCCTGATGAACAGAGATATCATCACCGTCCAAGTACAATTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAAGTCTACAAATCTGGACGACCTCACAGCCTCAGACTGGTCATTTTTTAAGGGTCTTTAA
Protein Sequence MRDSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDNGFTHRGTHYCSSSREWRVYLGDSKSPIFQDNKTPQPTIPDEQRYHHRPSTIQSQPEESVGDTQMFPKSTNLDDLTASDWSFFKGL

NCBI Accession YP_803222.1
Location 1531-2616
Gene Name AC1
Protein Name replication protein
Coding Region ATGCCTCGAGCTGGCAGATTTAATATAAATTCTAAAAATTATTTTCTTACATACCCTAAATGTTCTCTTTCAAAAGAAGAGGCACTTTCCCAATTACAAAAACTAGAAACTCCAACTTCTAAATTATTCATTAGAGTGTGTAGAGAGCTTCATGAAAATGGGGAACCTCATATCCACGTGCTCATCCAATTTGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACAAGATCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCGTCAGACGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATTCAAATTTAGATAGGATTTTTACACCTCCAGTGGAGGTTTATATTTCTCCTTTTTCTATTTCTTCATTTGATCGAGTTCCAGAGGAACTCGAAGACTGGGCTGCCGAGAACGTTGTCAGTGCCGCTGCGCGGCCATTAAGGCCCGTAAGTATAGTGATTGAGGGTGAGAGTAGGACGGGGAAGACGATGTGGGCGAGGTCACTTGGACCACACAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTCTACAATAATGATGTTTGGTATAACGTCATTGATGACGTTGATCCCCACTACCTAAAGCACTTTAAAGAATTTATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATAAAAGGCGGAATTCCCACTATCTTCCTATGCAATCCAGGACCCAACTCCAGTTATAAAGAGTTCCTGGACGAAGAAAAGAATTCAGCTTTAAAATTTTGGGCTTTAAAAAATGCGAGATTCATCACCCTCGAAGGCTCACTCTACTCAGGTTCCTATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGA
Protein Sequence MPRAGRFNINSKNYFLTYPKCSLSKEEALSQLQKLETPTSKLFIRVCRELHENGEPHIHVLIQFEGKFQCTNNRFFDLVSPTRSAHFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKATALNILREKAPKDFVLQFHNLNSNLDRIFTPPVEVYISPFSISSFDRVPEELEDWAAENVVSAAARPLRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKFWALKNARFITLEGSLYSGSYQSATQASQEGDQASTS

NCBI Accession YP_803223.1
Location 2166-2459
Gene Name AC4
Protein Name symptom expression protein
Coding Region ATGGGGAACCTCATATCCACGTGCTCATCCAATTTGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACAAGATCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCGTCAGACGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATTTTAA
Protein Sequence MGNLISTCSSNLKENSNAQITDSSTWFPQQDQHISIQTFRELRARQTSRPMWKKTETSLILEFSKSMADLLEEVSNLPTTHMPRQSIQGPKLRPSIF

References More References in PubMed

1

An Overview of Chili Leaf Curl Disease: Molecular Mechanisms, Impact, Challenges, and Disease Management Strategies in Indian Subcontinent.

Shingote PR, et al.  Front Microbiol. 2022 Jun 29;13:899512. doi: 10.3389/fmicb.2022.899512. eCollection 2022.

PMID: 35847087
2

A new record of Asia II 5 genetic group of Bemisia tabaci (Gennadius) in the major potato growing areas of India and its relationship with tomato leaf curl New Delhi virus infecting potato.

Naga KC, et al.  3 Biotech. 2021 Sep;11(9):421. doi: 10.1007/s13205-021-02966-7. Epub 2021 Aug 31.

PMID: 34603921
3

Molecular characterization of novel bipartite begomovirus associated with enation leaf disease of Garden croton (Codiaeum variegatum L.).

Venkataravanappa V, et al.  Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1.

PMID: 35991698
4

Aleurothrixus trachoides (Back) can transmit begomovirus from Duranta to potato, tomato and bell pepper.

Chandrashekar K, et al.  J Biosci. 2020;45:36.

PMID: 32098915