Tomato leaf curl Pune virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000868585.1 |
| Isolate |
India: Pune |
| Release date |
2015/2/13 |
| Submitter |
Chowda Reddy,R.V., Colvin,J., Muniyappa,V. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGGTTTTTTCGTGAGGGTCCCGCAGCGCACTAAATGACAATGATGTGTGGACCAATCATATTGCGCACTGAAAGCCTAATTATTGAGTTTGTTCCTATATATACTTGGTGACTAAGTTTGTCCTGTATACATAATGTGGGATCCACTATTAAATGATTTTCCTGAAACCGTACACGGGTTTAGGTGTATGCTTGCTATAAAATACTTGCATTTGATAGAAAATACGTACTCACCCGATTCATTGGGATACGATCTTATACGTGATTTAATTTCTGTTGTTAGGGCAAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGTCCCGTCTCGAAATATCGCCGACTTCTGACCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAAAATGTACAGAAGTCCGGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCTTTTGAGTCCAGACACGACGTAGTGCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACCGGTTTAACCCATAGGGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATTAAGACTAAGAATCACACTAACAGTGTCATGTTCTTCCTTGTTCGTGACCGTCGTCCTGTTGATAAGCCACAAGACTTCGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGTACGGCTACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTAAGAAAGTGGCATGCAACGGTCACTGGGGGACAATATGCTTCAAAAGAACAGGCGTTAGTTAAGAAGTTTGTTAGGGTTAATAACTATGTTGTGTATAACCAGCAAGAGGCTGGTAAATATGAAAATCATTCTGAGAATGCTTTGATGTTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAACTGATATTAATAAAGATTAAATTTTATTAAATATGATTGTTCTACGTATACAATGTGATGTAATACATTCCATAACACATAATCAACTGCTCCATTTACATTATTAATGCTGATAATGCCTAAATTATGTAAAAACTTAAATACTTGGGTCTTAAAGACCCTTAAAAAATGACCAGTCTGAGGCTGTGAGGTCGTCCAGATTTGTAGACTTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAATTGTACTTGGACGGTGATGATATCTCTGTTCATCAGGAATGGTCGGTTGTGGTGTTTTGTTATCTTGAAATATAGGGGATTTGGAATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTAATGGGTTCCCCTGTGCGTAAATCCATTGTCGTGACAGGCTAACGCTATGAAATATGAACAGCCGCAGGGTAGATCAACTCGTCGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGTTGCACTTTGATAGGAACCTGAGTAGAGTGAGCCTTCGAGGGTGATGAATCTCGCATTTTTTAAAGCCCAAAATTTTAAAGCTGAATTCTTTTCTTCGTCCAGGAACTCTTTATAACTGGAGTTGGGTCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCAAACATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTGTGTGGTCCAAGTGACCTCGCCCACATCGTCTTCCCCGTCCTACTCTCACCCTCAATCACTATACTTACGGGCCTTAATGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCAGTCTTCGAGTTCCTCTGGAACTCGATCAAATGAAGAAATAGAAAAAGGAGAAATATAAACCTCCACTGGAGGTGTAAAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGCCTTGACGTCTGACGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGATCTTGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTGTGCATTGGAATTTTCCTTCAAATTGGATGAGCACGTGGATATGAGGTTCCCCATTTTCATGAAGCTCTCTACACACTCTAATGAATAATTTAGAAGTTGGAGTTTCTAGTTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGAAAGAGAACATTTAGGGTATGTAAGAAAATAATTTTTAGAATTTATATTAAATCTGCCAGCTCGAGGCATTTGAATCGGTGGACACTCTAATTCTATGCATATCGGTGGAACGGTGGACAATATATACCCTGTCCACCAAATGGCATAATTGTAATTACATTGAAAGTTCTAATCAATTTCCCGGTGATAGCGGCCATCCGATTAATATT
Gene Information
|
NCBI Accession
|
YP_803218.1
|
|
Location
|
146-502 |
|
Gene Name
|
AV2 |
|
Protein Name
|
precoat protein |
|
Coding Region
|
ATGTGGGATCCACTATTAAATGATTTTCCTGAAACCGTACACGGGTTTAGGTGTATGCTTGCTATAAAATACTTGCATTTGATAGAAAATACGTACTCACCCGATTCATTGGGATACGATCTTATACGTGATTTAATTTCTGTTGTTAGGGCAAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGTCCCGTCTCGAAATATCGCCGACTTCTGACCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAAAATGTACAGAAGTCCGGATGTTCCTAG |
|
Protein Sequence
|
MWDPLLNDFPETVHGFRCMLAIKYLHLIENTYSPDSLGYDLIRDLISVVRAKNYVQASSRYDHFRSRLEISPTSDLNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQNVQKSGCS |
|
NCBI Accession
|
YP_803219.1
|
|
Location
|
306-1076 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGGTCCCGTCTCGAAATATCGCCGACTTCTGACCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAAAATGTACAGAAGTCCGGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAGTCTTTTGAGTCCAGACACGACGTAGTGCATATAGGGAAGGTTATGTGTATTAGTGATGTTACCCGTGGTACCGGTTTAACCCATAGGGTTGGTAAGCGTTTCTGTGTTAAGTCAGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATTAAGACTAAGAATCACACTAACAGTGTCATGTTCTTCCTTGTTCGTGACCGTCGTCCTGTTGATAAGCCACAAGACTTCGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGTACGGCTACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTAAGAAAGTGGCATGCAACGGTCACTGGGGGACAATATGCTTCAAAAGAACAGGCGTTAGTTAAGAAGTTTGTTAGGGTTAATAACTATGTTGTGTATAACCAGCAAGAGGCTGGTAAATATGAAAATCATTCTGAGAATGCTTTGATGTTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAACTGA |
|
Protein Sequence
|
MSKRPADMIISGPVSKYRRLLTSISPYSKRAAVRIVRGTKGKEWANRPMNRKPMFYKMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_803220.1
|
|
Location
|
1079-1483 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer |
|
Coding Region
|
ATGGATTTACGCACAGGGGAACCCATTACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCCAAATCCCCTATATTTCAAGATAACAAAACACCACAACCGACCATTCCTGATGAACAGAGATATCATCACCGTCCAAGTACAATTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAAGTCTACAAATCTGGACGACCTCACAGCCTCAGACTGGTCATTTTTTAAGGGTCTTTAAGACCCAAGTATTTAAGTTTTTACATAATTTAGGCATTATCAGCATTAATAATGTAAATGGAGCAGTTGATTATGTGTTATGGAATGTATTACATCACATTGTATACGTAGAACAATCATATTTAATAAAATTTAATCTTTATTAA |
|
Protein Sequence
|
MDLRTGEPITAAQAENGVYIWEIPNPLYFKITKHHNRPFLMNRDIITVQVQFNHNLRKALGIHKCFLSLQIWTTSQPQTGHFLRVFKTQVFKFLHNLGIISINNVNGAVDYVLWNVLHHIVYVEQSYLIKFNLY |
|
NCBI Accession
|
YP_803221.1
|
|
Location
|
1224-1628 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGCGAGATTCATCACCCTCGAAGGCTCACTCTACTCAGGTTCCTATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGATCTACCCTGCGGCTGTTCATATTTCATAGCGTTAGCCTGTCACGACAATGGATTTACGCACAGGGGAACCCATTACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCCAAATCCCCTATATTTCAAGATAACAAAACACCACAACCGACCATTCCTGATGAACAGAGATATCATCACCGTCCAAGTACAATTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAAGTCTACAAATCTGGACGACCTCACAGCCTCAGACTGGTCATTTTTTAAGGGTCTTTAA |
|
Protein Sequence
|
MRDSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDNGFTHRGTHYCSSSREWRVYLGDSKSPIFQDNKTPQPTIPDEQRYHHRPSTIQSQPEESVGDTQMFPKSTNLDDLTASDWSFFKGL |
|
NCBI Accession
|
YP_803222.1
|
|
Location
|
1531-2616 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication protein |
|
Coding Region
|
ATGCCTCGAGCTGGCAGATTTAATATAAATTCTAAAAATTATTTTCTTACATACCCTAAATGTTCTCTTTCAAAAGAAGAGGCACTTTCCCAATTACAAAAACTAGAAACTCCAACTTCTAAATTATTCATTAGAGTGTGTAGAGAGCTTCATGAAAATGGGGAACCTCATATCCACGTGCTCATCCAATTTGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACAAGATCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCGTCAGACGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATTCAAATTTAGATAGGATTTTTACACCTCCAGTGGAGGTTTATATTTCTCCTTTTTCTATTTCTTCATTTGATCGAGTTCCAGAGGAACTCGAAGACTGGGCTGCCGAGAACGTTGTCAGTGCCGCTGCGCGGCCATTAAGGCCCGTAAGTATAGTGATTGAGGGTGAGAGTAGGACGGGGAAGACGATGTGGGCGAGGTCACTTGGACCACACAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTCTACAATAATGATGTTTGGTATAACGTCATTGATGACGTTGATCCCCACTACCTAAAGCACTTTAAAGAATTTATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATAAAAGGCGGAATTCCCACTATCTTCCTATGCAATCCAGGACCCAACTCCAGTTATAAAGAGTTCCTGGACGAAGAAAAGAATTCAGCTTTAAAATTTTGGGCTTTAAAAAATGCGAGATTCATCACCCTCGAAGGCTCACTCTACTCAGGTTCCTATCAAAGTGCAACACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGA |
|
Protein Sequence
|
MPRAGRFNINSKNYFLTYPKCSLSKEEALSQLQKLETPTSKLFIRVCRELHENGEPHIHVLIQFEGKFQCTNNRFFDLVSPTRSAHFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKATALNILREKAPKDFVLQFHNLNSNLDRIFTPPVEVYISPFSISSFDRVPEELEDWAAENVVSAAARPLRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKFWALKNARFITLEGSLYSGSYQSATQASQEGDQASTS |
|
NCBI Accession
|
YP_803223.1
|
|
Location
|
2166-2459 |
|
Gene Name
|
AC4 |
|
Protein Name
|
symptom expression protein |
|
Coding Region
|
ATGGGGAACCTCATATCCACGTGCTCATCCAATTTGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACAAGATCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCGTCAGACGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATTTTAA |
|
Protein Sequence
|
MGNLISTCSSNLKENSNAQITDSSTWFPQQDQHISIQTFRELRARQTSRPMWKKTETSLILEFSKSMADLLEEVSNLPTTHMPRQSIQGPKLRPSIF |