Tomato leaf curl Philippines virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840685.1
Release date 2015/2/12
Submitter Kon,T., Dolores,L.M., Murayama,A., Bajet,N.B., Hase,S., Takahashi,H., Ikegami,M.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_005032
TAATATTACCGTGGGCCGCGCAAATTTTTTTTATATTTGGGCCTAATGGGCCTGTTGGATGTCGGCTGCGACCAATGGAAACGCTCCCTCATCGCTTAACAATTATGTTGTCCTCTATTTATTTCTGCTGCATCAGTTTTGAATTAAGAATGTGGGATCCTCTGGTACATCCATTTCCTGAAAGCTTACACGGCTTCAGATGTATGCTTGCCATCAAATATCTTCAGAGCTTACAGAATAAATATTCTCCGGACACTGTTGGGCATGAGTTTTTGAAAGATTTTATCTGCATATTGCGAAGTAAGAATTATGCCGAAGCGTTCAATAGATACAGTAACGTCGTTGCCAATGTCTATAACACGTCGGAGGCTCAATTACGGGAGTCAGTACAGTCTCCCTGCCTCTGTCCCCACTGTCCCAGACATGTCTTACAAGCGAAGGTCATGGACTTACAGGCCCATGTTTCGGAAGCCCAAGATATACAGAATGTATAGAAGCCGTGATGTTCCTCGTGGGTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAACAGCGTCATGATATAGCCCATGTGGGTAAAGTCATATGTGTTTCTGATGTCACTCGTGGTAATGGGCTCACACATCGTGTGGGAAAGAGATTTTGTGTAAAGTCTGTGTATGTGTTGGGGAAGGTCTGGATGGATGAGAACATCAAGACTAAGAATCACACAAACACTGTCATGTTTTTTTTAGTTCGTGATAGGAGACCCTATGGGACTCCCCAGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGTACTGCAACAGTAAAAAATGATAATAGAGATCGATACCAAGTTCTTCGTAAATTTCAAGCTACAGTGACTGGAGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTCAAGAGGTTCATGAAGATTAACAACCATGTTACTTACAATCATCAAGAGACTGCGAAGTACGATAACCATACAGAGAACGCTTTACTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAATAAATATTGAATTTTATTATATGAGAAAATTCTACATCTATTGTTTGAATTACATTGTACATCACATGATCGACTGCCCTAATTACATTGTTTATGCTAATAACCCCTAAACTATACAAATACTTCATACACTGATATTTAAATACTCTTAAGAAATGCCAAGTCTGAGGATGTAAATGAGTCCAGATTTTGCAGATCAGAAAACATTGATGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGTACTGTTATGATATCGTGGTTTTTCAAGAACGGCATCTTGTCGTGTTGGGATATCTTGAAATAAAGGGGATTTGTTATCGTCCAGGTATATACGCCATTCTCTGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGAGAATCCATATGAAGCGCAATTAAGTCCTAGATAGTAAGAGCAGCCGCAAGGAAGATCAATTCTCCGCCTGCGTATTGGTCTCCTCTTGGCTATTTTGTGCTGGACTTTGATGGGTACCTGAGTAGAGTGGCCTCGTGAGGGTGATGAATTCTGCATTTTTTAGTGCCCAGTCTTTGAGTGGAGAATTTTTATCCTCATCCAAGTACTCTTTATACGACGATGTAGGTCCTGGATTGCATAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAATGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTAAGGTCCAGATGTCCACACAAATAATTATGTGGACCCATAGACCTAGCCCACATCGTCTTCCCCGTCCTGCTATCTCCTTCTATGACAATACTCATGGGTCTCCCATTGCGCGCAGCGGCATCCCTAACATTCTCGGAAACCCAGTCTTCAAGTTCTTTTGGAACTTGGTCGAAAGAAGAAGAAAGAAAAGGACAACGAAAAACCTCTAAAGGAGGTGCAAAGATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAAAACAAAATCTTTTGGAGCTAACTCCCTAATTACATTAAGAGCCTCCGACTTACTTCCTGTGTTAATTGCTTTGGCGTAAGCATCATTGGCTGATTGTTGACCCCCTCTAGCAGATCTTCCATCGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTATCAATATATGATTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTTGGATGGTAATGTGCTGACCTTGTTGGGGATACCAGATCGAAGAATCTCTTATTCGTGCATCTGTATTTCCCTTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATTTTGATGAATTTTTTGTTTGTTACAGTATCTAGCGTCTTTATCTGGGCAAGGGTTTCCTCTTTTGTAAGACAGCATTTGGGATATGTAAGAAAATAATTTTTGGCATTTATTTGGAATTTTCTGGGTGGTGCCATTTGACTCAGTCAATGGGTACCAATTGAGAGGATTTCATTCTACTCAGGGTATCGGTACATTGGTACCCATATATACTTGGTTACCTAATGGCATAATTGTAATTTTTTTATGGGCTTCCAAGCGGCCCACGACTA

Gene Information

NCBI Accession NP_871722.1
Location 150-494
Gene Name V2
Protein Name V2 protein
Coding Region ATGTGGGATCCTCTGGTACATCCATTTCCTGAAAGCTTACACGGCTTCAGATGTATGCTTGCCATCAAATATCTTCAGAGCTTACAGAATAAATATTCTCCGGACACTGTTGGGCATGAGTTTTTGAAAGATTTTATCTGCATATTGCGAAGTAAGAATTATGCCGAAGCGTTCAATAGATACAGTAACGTCGTTGCCAATGTCTATAACACGTCGGAGGCTCAATTACGGGAGTCAGTACAGTCTCCCTGCCTCTGTCCCCACTGTCCCAGACATGTCTTACAAGCGAAGGTCATGGACTTACAGGCCCATGTTTCGGAAGCCCAAGATATACAGAATGTATAG
Protein Sequence MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDFICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAHVSEAQDIQNV

NCBI Accession NP_871723.1
Location 310-1086
Gene Name V1
Protein Name coat protein
Coding Region ATGCCGAAGCGTTCAATAGATACAGTAACGTCGTTGCCAATGTCTATAACACGTCGGAGGCTCAATTACGGGAGTCAGTACAGTCTCCCTGCCTCTGTCCCCACTGTCCCAGACATGTCTTACAAGCGAAGGTCATGGACTTACAGGCCCATGTTTCGGAAGCCCAAGATATACAGAATGTATAGAAGCCGTGATGTTCCTCGTGGGTGTGAAGGCCCATGTAAGGTTCAGTCTTATGAACAGCGTCATGATATAGCCCATGTGGGTAAAGTCATATGTGTTTCTGATGTCACTCGTGGTAATGGGCTCACACATCGTGTGGGAAAGAGATTTTGTGTAAAGTCTGTGTATGTGTTGGGGAAGGTCTGGATGGATGAGAACATCAAGACTAAGAATCACACAAACACTGTCATGTTTTTTTTAGTTCGTGATAGGAGACCCTATGGGACTCCCCAGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGTACTGCAACAGTAAAAAATGATAATAGAGATCGATACCAAGTTCTTCGTAAATTTCAAGCTACAGTGACTGGAGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTCAAGAGGTTCATGAAGATTAACAACCATGTTACTTACAATCATCAAGAGACTGCGAAGTACGATAACCATACAGAGAACGCTTTACTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAA
Protein Sequence MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRSWTYRPMFRKPKIYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQETAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_871724.1
Location 1083-1484
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCTCGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTATATACCTGGACGATAACAAATCCCCTTTATTTCAAGATATCCCAACACGACAAGATGCCGTTCTTGAAAAACCACGATATCATAACAGTACAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACATCAATGTTTTCTGATCTGCAAAATCTGGACTCATTTACATCCTCAGACTTGGCATTTCTTAAGAGTATTTAAATATCAGTGTATGAAGTATTTGTATAGTTTAGGGGTTATTAGCATAAACAATGTAATTAGGGCAGTCGATCATGTGATGTACAATGTAATTCAAACAATAGATGTAGAATTTTCTCATATAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDIITVQIQFNHNLRKALGIHQCFLICKIWTHLHPQTWHFLRVFKYQCMKYLYSLGVISINNVIRAVDHVMYNVIQTIDVEFSHIIKFNIY

NCBI Accession NP_871725.1
Location 1225-1632
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGAATTCATCACCCTCACGAGGCCACTCTACTCAGGTACCCATCAAAGTCCAGCACAAAATAGCCAAGAGGAGACCAATACGCAGGCGGAGAATTGATCTTCCTTGCGGCTGCTCTTACTATCTAGGACTTAATTGCGCTTCATATGGATTCTCGCACAGGGGAACCCATCACTGCAGCTCAGGCAGAGAATGGCGTATATACCTGGACGATAACAAATCCCCTTTATTTCAAGATATCCCAACACGACAAGATGCCGTTCTTGAAAAACCACGATATCATAACAGTACAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACATCAATGTTTTCTGATCTGCAAAATCTGGACTCATTTACATCCTCAGACTTGGCATTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPSRGHSTQVPIKVQHKIAKRRPIRRRRIDLPCGCSYYLGLNCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRYHNSTNTVQPQPEESVGNTSMFSDLQNLDSFTSSDLAFLKSI

NCBI Accession NP_871726.1
Location 1532-2620
Gene Name C1
Protein Name Replication-associated protein
Coding Region ATGGCACCACCCAGAAAATTCCAAATAAATGCCAAAAATTATTTTCTTACATATCCCAAATGCTGTCTTACAAAAGAGGAAACCCTTGCCCAGATAAAGACGCTAGATACTGTAACAAACAAAAAATTCATCAAAATCTGCAGAGAACTGCACGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAAGGGAAATACAGATGCACGAATAAGAGATTCTTCGATCTGGTATCCCCAACAAGGTCAGCACATTACCATCCAAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAATCATATATTGATAAGGACGGAGACACCCTCGAATGGGGTGAGTTTCAGATCGATGGAAGATCTGCTAGAGGGGGTCAACAATCAGCCAATGATGCTTACGCCAAAGCAATTAACACAGGAAGTAAGTCGGAGGCTCTTAATGTAATTAGGGAGTTAGCTCCAAAAGATTTTGTTTTACAATTTCATAATTTAAATGCCAATTTAGATAGGATCTTTGCACCTCCTTTAGAGGTTTTTCGTTGTCCTTTTCTTTCTTCTTCTTTCGACCAAGTTCCAAAAGAACTTGAAGACTGGGTTTCCGAGAATGTTAGGGATGCCGCTGCGCGCAATGGGAGACCCATGAGTATTGTCATAGAAGGAGATAGCAGGACGGGGAAGACGATGTGGGCTAGGTCTATGGGTCCACATAATTATTTGTGTGGACATCTGGACCTTAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCATTTTAAAGAGTTTATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGTGGGATCCCAACAATCTTCCTATGCAATCCAGGACCTACATCGTCGTATAAAGAGTACTTGGATGAGGATAAAAATTCTCCACTCAAAGACTGGGCACTAAAAAATGCAGAATTCATCACCCTCACGAGGCCACTCTACTCAGGTACCCATCAAAGTCCAGCACAAAATAGCCAAGAGGAGACCAATACGCAGGCGGAGAATTGA
Protein Sequence MAPPRKFQINAKNYFLTYPKCCLTKEETLAQIKTLDTVTNKKFIKICRELHEDGSPHLHVLIQFEGKYRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFHNLNANLDRIFAPPLEVFRCPFLSSSFDQVPKELEDWVSENVRDAAARNGRPMSIVIEGDSRTGKTMWARSMGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSPLKDWALKNAEFITLTRPLYSGTHQSPAQNSQEETNTQAEN

NCBI Accession NP_871727.1
Location 2173-2463
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAAGGGAAATACAGATGCACGAATAAGAGATTCTTCGATCTGGTATCCCCAACAAGGTCAGCACATTACCATCCAAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAATCATATATTGATAAGGACGGAGACACCCTCGAATGGGGTGAGTTTCAGATCGATGGAAGATCTGCTAGAGGGGGTCAACAATCAGCCAATGATGCTTACGCCAAAGCAATTAACACAGGAAGTAAGTCGGAGGCTCTTAATGTAA
Protein Sequence MGALISMCSSSSKGNTDARIRDSSIWYPQQGQHITIQTYRELNQAPTSNHILIRTETPSNGVSFRSMEDLLEGVNNQPMMLTPKQLTQEVSRRLLM

References More References in PubMed

1

Interaction of tomato yellow leaf curl virus with diverse betasatellites enhances symptom severity.

Ito T, et al.  Arch Virol. 2009;154(8):1233-9. doi: 10.1007/s00705-009-0431-8. Epub 2009 Jul 3.

PMID: 19575277
2

Molecular analysis of new isolates of Tomato leaf curl Philippines virus and an associated betasatellite occurring in the Philippines.

Sharma P, et al.  Arch Virol. 2011 Feb;156(2):305-12. doi: 10.1007/s00705-010-0837-3. Epub 2010 Oct 30.

PMID: 21053032
3

Identification of a New Begomovirus Associated with Yellow Leaf Curl Diseases of Tomato and Pepper in Sulawesi, Indonesia.

Tsai WS, et al.  Plant Dis. 2009 Mar;93(3):321. doi: 10.1094/PDIS-93-3-0321C.

PMID: 30764201
4

Genetic Diversity and Geographic Distribution of Cucurbit-Infecting Begomoviruses in the Philippines.

Neoh ZY, et al.  Plants (Basel). 2023 Jan 6;12(2):272. doi: 10.3390/plants12020272.

PMID: 36678986
5

Molecular characterization of a new strain of tomato leaf curl Philippines virus and its associated satellite DNAbeta molecule: further evidence for natural recombination amongst begomoviruses.

Matsuda N, et al.  Arch Virol. 2008;153(5):961-7. doi: 10.1007/s00705-008-0065-2. Epub 2008 Mar 21.

PMID: 18357407
6

Isolation and molecular characterization of a distinct begomovirus and its associated betasatellite infecting Hedyotis uncinella (Hook. et Arn.) in Vietnam.

Du Z, et al.  Virus Genes. 2014 Jun;48(3):557-61. doi: 10.1007/s11262-014-1043-2. Epub 2014 Feb 8.

PMID: 24510306