Tomato leaf curl Patna virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000881195.1
Isolate India: Patna
Release date 2015/2/22
Submitter Kumari,P., Chattopadhyay,B., Singh,A.K., Chakraborty,S.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_012492
ACCGGATGGCCGCGATTTTTTTAAAAGTGGTCCCCCCCACTACCTCGTGTCGGCCAATAAAAACGCTCCCTCAGAGTTAAATTAGTGGTGGTCCCTCTATTTATATCTTGGTCACCAAGTTTGTTTTCAGAAATGTGGGATCCACTTCTCAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAGTTAGTAGAAAATACGTATTCTCCAGACACATTAGGTTACGATTTAATTCGTGATTTAATATTAGTTATCCGTGCAAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGATGTTCCCAAGGGGTGCGAAGGTCCGTGTAAGGTCCAGTCTTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTGATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCACCGTGTGGGTAAGAGATTTTGTGTGAAGTCTATTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAACACTGTTATGTTCTTCCTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGACAGGTTTTCAACATGTATGACAATGAACCCAGTACTGCAACTGTCAAGAATGATATGAGAGATCGATTTCAGGTCTTAAGGAAATTTACTGCAACGGTTACAGGTGGTCAGTATGCTTCCAAGGAACAGGCATTAGTTAGGAAATTTATGAAGATTAATAATTATGTAGTGTATAATCATCAAGAGGCTGCCAAGTATGAAAATCATACTGAGAACGCTCTTCTAATGTATATGGCATGTACACATGCCAGTAATCCTGTGTATGCAACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAGAATTAATAAATATTGAATTTTATTATATGGGATAATTCGGCATCAATTGTGCCTTCTAATACATTGTACAATACATGAGACATTGCCCTAATTACATTATTAATACTAATAACTCCTAAACTATTTAAATATTTCATACATTGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCAGATTCGGCAAATTAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGGACTTGTATGGTGATTATGTCGTTGTTGGATAGAAATGGTCTCTCGTGGTGTTGGGATATCTTGAAATAGAGGGGATTTTTGACCGTCCAAATATACACGCCACTCTCTTCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTGATGCGCAGTCAAGTCCAAAATAGTAAGAGCAACCGCAGGGAAGATCTATCCTACGTCTGCGAACTGGTCTCTTCTTGGCTATTCTGTGCTGGACTTTGATGGGTACCTGAGTACAACGGCTCGGTGAGGGTGAAGAATTCTGCATTCTTTATGCCCAGATCTTTTAGTGCTGAATTCTTTTCCTCATCCAAGTACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCTCTATGACTATACTGACGGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGATACCCAGCATTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAGGGAGAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAGTACATAATCTTTGGGTGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCTTGCGTTAAGTGCTGTGGCGTAAGCGTCATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCATGAAGTTCCCTGCAGACTCTTATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTCTAATTGTGAGAGGGCTTCTTCTTTAGTTAGAGAGCATTTGGGATAAGTGAGAAAATAGTTTTTTGCATTTAATCTAAAAACGTCCGCACGTGGCATTTTGGCAATCGGTGTACAAACTAATTCTATGGCAATCGGTGTATTGGGGTGCAATATATATGTGTACACCAAATGGCATTATTGTAATTTGGGAAAGAAATTCAAAATTCAAATTTCAAAATTCCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_002775431.1
Location 133-483
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTTCTCAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAGTTAGTAGAAAATACGTATTCTCCAGACACATTAGGTTACGATTTAATTCGTGATTTAATATTAGTTATCCGTGCAAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRFQGSSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHVQKAQDVQTVQKP

NCBI Accession YP_002775432.1
Location 275-688
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGATTCTTGGTCTTGATGTTCTCATCCATCCAGATCTTACCCAAAACATAAATAGACTTCACACAAAATCTCTTACCCACACGGTGAGTAAGCCCATTACCACGAGTAACATCAGAAACACATATCACCTTGCCTGTATGGGCTATATCATGTCTCTGTTCATAAGACTGGACCTTACACGGACCTTCGCACCCCTTGGGAACATCAGGGCTTCTGTACAGTCTGTACATCTTGGGCTTTTTGTACATGGGCCGATTGACCCATGTCCTCCTTTTGTTTGTGACGAGGACAGTGGGGGCAACAGCACGGCTGACATATGGGCTGTCGAAGTTCAGCCGGCGACGAACCTTGGAAGCGGGAGTGGAAATGACTATATCGGCGGGACGCTTCGACATAATCTCTTGCACGGATAA
Protein Sequence MILGLDVLIHPDLTQNINRLHTKSLTHTVSKPITTSNIRNTYHLACMGYIMSLFIRLDLTRTFAPLGNIRASVQSVHLGLFVHGPIDPCPPFVCDEDSGGNSTADIWAVEVQPATNLGSGSGNDYIGGTLRHNLLHG

NCBI Accession YP_002775433.1
Location 293-1066
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGATGTTCCCAAGGGGTGCGAAGGTCCGTGTAAGGTCCAGTCTTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTGATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCACCGTGTGGGTAAGAGATTTTGTGTGAAGTCTATTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAACACTGTTATGTTCTTCCTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGACAGGTTTTCAACATGTATGACAATGAACCCAGTACTGCAACTGTCAAGAATGATATGAGAGATCGATTTCAGGTCTTAAGGAAATTTACTGCAACGGTTACAGGTGGTCAGTATGCTTCCAAGGAACAGGCATTAGTTAGGAAATTTATGAAGATTAATAATTATGTAGTGTATAATCATCAAGAGGCTGCCAAGTATGAAAATCATACTGAGAACGCTCTTCTAATGTATATGGCATGTACACATGCCAGTAATCCTGTGTATGCAACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRAVAPTVLVTNKRRTWVNRPMYKKPKMYRLYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLMYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_002775434.1
Location 1063-1467
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGAAGAGAGTGGCGTGTATATTTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAACACCACGAGAGACCATTTCTATCCAACAACGACATAATCACCATACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAAATATCAATGTATGAAATATTTAAATAGTTTAGGAGTTATTAGTATTAATAATGTAATTAGGGCAATGTCTCATGTATTGTACAATGTATTAGAAGGCACAATTGATGCCGAATTATCCCATATAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELITATQEESGVYIWTVKNPLYFKISQHHERPFLSNNDIITIQVQFNYNLRKALGIHQCFLICRIWTRLRPQTWRFLRVFKYQCMKYLNSLGVISINNVIRAMSHVLYNVLEGTIDAELSHIIKFNIY

NCBI Accession YP_002775435.1
Location 1208-1615
Gene Name AC2
Protein Name trans-activator protein
Coding Region ATGCAGAATTCTTCACCCTCACCGAGCCGTTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGACGTAGGATAGATCTTCCCTGCGGTTGCTCTTACTATTTTGGACTTGACTGCGCATCACATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGAAGAGAGTGGCGTGTATATTTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAACACCACGAGAGACCATTTCTATCCAACAACGACATAATCACCATACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPSPSRCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGLDCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPTPRETISIQQRHNHHTSPVQLQPEESVGDTPVFSNLPNLDSFTSSDLAFLKSI

NCBI Accession YP_002775436.1
Location 1521-2603
Gene Name AC1
Protein Name replication initiation protein
Coding Region ATGCCACGTGCGGACGTTTTTAGATTAAATGCAAAAAACTATTTTCTCACTTATCCCAAATGCTCTCTAACTAAAGAAGAAGCCCTCTCACAATTAGAAAACCTACAAACCCCAGTAAACAAAAAATACATAAGAGTCTGCAGGGAACTTCATGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCCACAGCACTTAACGCAAGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCACCCAAAGATTATGTACTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCCTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGTATCAGAAAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCCGTCAGTATAGTCATAGAGGGTGAGAGTAGAACAGGGAAGACCATGTGGGCCAGGTCTCTGGGTCCACATAACTATTTATGTGGTCACCTTGACCTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAGGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATGCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGCCCGACATCATCATATAAAGAGTACTTGGATGAGGAAAAGAATTCAGCACTAAAAGATCTGGGCATAAAGAATGCAGAATTCTTCACCCTCACCGAGCCGTTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGACGTAG
Protein Sequence MPRADVFRLNAKNYFLTYPKCSLTKEEALSQLENLQTPVNKKYIRVCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQTANDAYATALNASSKSEALRVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDLGIKNAEFFTLTEPLYSGTHQSPAQNSQEETSSQT

NCBI Accession YP_002775437.1
Location 2144-2452
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCCACAGCACTTAACGCAAGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG
Protein Sequence MRMGNLIFTCSSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSMEDLQEGVNRQPMTLTPQHLTQAVSQRLLESLRN

References More References in PubMed

1

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, India.

Kumari P, et al.  Plant Dis. 2009 May;93(5):545. doi: 10.1094/PDIS-93-5-0545B.

PMID: 30764166
2

Two distinct monopartite begomovirus-betasatellite complexes in western India cause tomato leaf curl disease.

Sangeeta, et al.  Virus Res. 2021 Apr 2;295:198319. doi: 10.1016/j.virusres.2021.198319. Epub 2021 Jan 26.

PMID: 33508355
3

Occurrence of Cotton leaf curl Multan virus and associated betasatellites with leaf curl disease of Bhut-Jolokia chillies (Capsicum chinense Jacq.) in India.

Yogindran S, et al.  Mol Biol Rep. 2021 Mar;48(3):2143-2152. doi: 10.1007/s11033-021-06223-1. Epub 2021 Feb 26.

PMID: 33635470
4

Detection and characterization of a new betasatellite: variation in disease symptoms of tomato leaf curl Pakistan virus-India due to associated betasatellite.

Kumar J, et al.  Arch Virol. 2013 Jan;158(1):257-61. doi: 10.1007/s00705-012-1486-5. Epub 2012 Sep 29.

PMID: 23053516
5

Molecular characterization of a new species of Begomovirus and betasatellite causing leaf curl disease of tomato in India.

Kumari P, et al.  Virus Res. 2010 Sep;152(1-2):19-29. doi: 10.1016/j.virusres.2010.05.015. Epub 2010 Jun 9.

PMID: 20540978
6

Molecular characterization of a new begomovirus infecting Mirabilis jalapa in northern India.

Kulshreshtha A, et al.  Arch Virol. 2017 Jul;162(7):2163-2167. doi: 10.1007/s00705-017-3330-4. Epub 2017 Mar 24.

PMID: 28342034
7

Betasatellite-encoded βC1 protein regulates helper virus accumulation by interfering with the ATP hydrolysis activity of geminivirus-encoded replication initiator protein.

Gnanasekaran P, et al.  J Gen Virol. 2023 Jun;104(6). doi: 10.1099/jgv.0.001866.

PMID: 37326617
8

Geminivirus Betasatellite-Encoded βC1 Protein Exhibits Novel ATP Hydrolysis Activity That Influences Its DNA-Binding Activity and Viral Pathogenesis.

Gnanasekaran P, et al.  J Virol. 2021 Aug 10;95(17):e0047521. doi: 10.1128/JVI.00475-21. Epub 2021 Aug 10.

PMID: 34132576