Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000881195.1 |
Isolate | India: Patna |
Release date | 2015/2/22 |
Submitter | Kumari,P., Chattopadhyay,B., Singh,A.K., Chakraborty,S. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_002775431.1 |
---|---|
Location | 133-483 |
Gene Name | AV2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCACTTCTCAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAGTTAGTAGAAAATACGTATTCTCCAGACACATTAGGTTACGATTTAATTCGTGATTTAATATTAGTTATCCGTGCAAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGA |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRFQGSSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHVQKAQDVQTVQKP |
NCBI Accession | YP_002775432.1 |
---|---|
Location | 275-688 |
Gene Name | AC5 |
Protein Name | AC5 protein |
Coding Region | ATGATTCTTGGTCTTGATGTTCTCATCCATCCAGATCTTACCCAAAACATAAATAGACTTCACACAAAATCTCTTACCCACACGGTGAGTAAGCCCATTACCACGAGTAACATCAGAAACACATATCACCTTGCCTGTATGGGCTATATCATGTCTCTGTTCATAAGACTGGACCTTACACGGACCTTCGCACCCCTTGGGAACATCAGGGCTTCTGTACAGTCTGTACATCTTGGGCTTTTTGTACATGGGCCGATTGACCCATGTCCTCCTTTTGTTTGTGACGAGGACAGTGGGGGCAACAGCACGGCTGACATATGGGCTGTCGAAGTTCAGCCGGCGACGAACCTTGGAAGCGGGAGTGGAAATGACTATATCGGCGGGACGCTTCGACATAATCTCTTGCACGGATAA |
Protein Sequence | MILGLDVLIHPDLTQNINRLHTKSLTHTVSKPITTSNIRNTYHLACMGYIMSLFIRLDLTRTFAPLGNIRASVQSVHLGLFVHGPIDPCPPFVCDEDSGGNSTADIWAVEVQPATNLGSGSGNDYIGGTLRHNLLHG |
NCBI Accession | YP_002775433.1 |
---|---|
Location | 293-1066 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGATGTTCCCAAGGGGTGCGAAGGTCCGTGTAAGGTCCAGTCTTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTGATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCACCGTGTGGGTAAGAGATTTTGTGTGAAGTCTATTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAACACTGTTATGTTCTTCCTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGACAGGTTTTCAACATGTATGACAATGAACCCAGTACTGCAACTGTCAAGAATGATATGAGAGATCGATTTCAGGTCTTAAGGAAATTTACTGCAACGGTTACAGGTGGTCAGTATGCTTCCAAGGAACAGGCATTAGTTAGGAAATTTATGAAGATTAATAATTATGTAGTGTATAATCATCAAGAGGCTGCCAAGTATGAAAATCATACTGAGAACGCTCTTCTAATGTATATGGCATGTACACATGCCAGTAATCCTGTGTATGCAACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAGAATTAA |
Protein Sequence | MSKRPADIVISTPASKVRRRLNFDSPYVSRAVAPTVLVTNKRRTWVNRPMYKKPKMYRLYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLMYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession | YP_002775434.1 |
---|---|
Location | 1063-1467 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGAAGAGAGTGGCGTGTATATTTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAACACCACGAGAGACCATTTCTATCCAACAACGACATAATCACCATACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAAATATCAATGTATGAAATATTTAAATAGTTTAGGAGTTATTAGTATTAATAATGTAATTAGGGCAATGTCTCATGTATTGTACAATGTATTAGAAGGCACAATTGATGCCGAATTATCCCATATAATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGELITATQEESGVYIWTVKNPLYFKISQHHERPFLSNNDIITIQVQFNYNLRKALGIHQCFLICRIWTRLRPQTWRFLRVFKYQCMKYLNSLGVISINNVIRAMSHVLYNVLEGTIDAELSHIIKFNIY |
NCBI Accession | YP_002775435.1 |
---|---|
Location | 1208-1615 |
Gene Name | AC2 |
Protein Name | trans-activator protein |
Coding Region | ATGCAGAATTCTTCACCCTCACCGAGCCGTTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGACGTAGGATAGATCTTCCCTGCGGTTGCTCTTACTATTTTGGACTTGACTGCGCATCACATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGAAGAGAGTGGCGTGTATATTTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAACACCACGAGAGACCATTTCTATCCAACAACGACATAATCACCATACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAA |
Protein Sequence | MQNSSPSPSRCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGLDCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPTPRETISIQQRHNHHTSPVQLQPEESVGDTPVFSNLPNLDSFTSSDLAFLKSI |
NCBI Accession | YP_002775436.1 |
---|---|
Location | 1521-2603 |
Gene Name | AC1 |
Protein Name | replication initiation protein |
Coding Region | ATGCCACGTGCGGACGTTTTTAGATTAAATGCAAAAAACTATTTTCTCACTTATCCCAAATGCTCTCTAACTAAAGAAGAAGCCCTCTCACAATTAGAAAACCTACAAACCCCAGTAAACAAAAAATACATAAGAGTCTGCAGGGAACTTCATGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCCACAGCACTTAACGCAAGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCACCCAAAGATTATGTACTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCCTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGTATCAGAAAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCCGTCAGTATAGTCATAGAGGGTGAGAGTAGAACAGGGAAGACCATGTGGGCCAGGTCTCTGGGTCCACATAACTATTTATGTGGTCACCTTGACCTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAGGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATGCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGCCCGACATCATCATATAAAGAGTACTTGGATGAGGAAAAGAATTCAGCACTAAAAGATCTGGGCATAAAGAATGCAGAATTCTTCACCCTCACCGAGCCGTTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGACGTAG |
Protein Sequence | MPRADVFRLNAKNYFLTYPKCSLTKEEALSQLENLQTPVNKKYIRVCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQTANDAYATALNASSKSEALRVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDLGIKNAEFFTLTEPLYSGTHQSPAQNSQEETSSQT |
NCBI Accession | YP_002775437.1 |
---|---|
Location | 2144-2452 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCCACAGCACTTAACGCAAGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG |
Protein Sequence | MRMGNLIFTCSSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSMEDLQEGVNRQPMTLTPQHLTQAVSQRLLESLRN |
1 |
A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, India. Kumari P, et al. Plant Dis. 2009 May;93(5):545. doi: 10.1094/PDIS-93-5-0545B. PMID: 30764166 |
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2 |
Sangeeta, et al. Virus Res. 2021 Apr 2;295:198319. doi: 10.1016/j.virusres.2021.198319. Epub 2021 Jan 26. PMID: 33508355 |
3 |
Yogindran S, et al. Mol Biol Rep. 2021 Mar;48(3):2143-2152. doi: 10.1007/s11033-021-06223-1. Epub 2021 Feb 26. PMID: 33635470 |
4 |
Kumar J, et al. Arch Virol. 2013 Jan;158(1):257-61. doi: 10.1007/s00705-012-1486-5. Epub 2012 Sep 29. PMID: 23053516 |
5 |
Kumari P, et al. Virus Res. 2010 Sep;152(1-2):19-29. doi: 10.1016/j.virusres.2010.05.015. Epub 2010 Jun 9. PMID: 20540978 |
6 |
Molecular characterization of a new begomovirus infecting Mirabilis jalapa in northern India. Kulshreshtha A, et al. Arch Virol. 2017 Jul;162(7):2163-2167. doi: 10.1007/s00705-017-3330-4. Epub 2017 Mar 24. PMID: 28342034 |
7 |
Gnanasekaran P, et al. J Gen Virol. 2023 Jun;104(6). doi: 10.1099/jgv.0.001866. PMID: 37326617 |
8 |
Gnanasekaran P, et al. J Virol. 2021 Aug 10;95(17):e0047521. doi: 10.1128/JVI.00475-21. Epub 2021 Aug 10. PMID: 34132576 |