Tomato leaf curl Patna virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000881195.1 |
| Isolate |
India: Patna |
| Release date |
2015/2/22 |
| Submitter |
Kumari,P., Chattopadhyay,B., Singh,A.K., Chakraborty,S. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTAAAAGTGGTCCCCCCCACTACCTCGTGTCGGCCAATAAAAACGCTCCCTCAGAGTTAAATTAGTGGTGGTCCCTCTATTTATATCTTGGTCACCAAGTTTGTTTTCAGAAATGTGGGATCCACTTCTCAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAGTTAGTAGAAAATACGTATTCTCCAGACACATTAGGTTACGATTTAATTCGTGATTTAATATTAGTTATCCGTGCAAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGATGTTCCCAAGGGGTGCGAAGGTCCGTGTAAGGTCCAGTCTTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTGATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCACCGTGTGGGTAAGAGATTTTGTGTGAAGTCTATTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAACACTGTTATGTTCTTCCTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGACAGGTTTTCAACATGTATGACAATGAACCCAGTACTGCAACTGTCAAGAATGATATGAGAGATCGATTTCAGGTCTTAAGGAAATTTACTGCAACGGTTACAGGTGGTCAGTATGCTTCCAAGGAACAGGCATTAGTTAGGAAATTTATGAAGATTAATAATTATGTAGTGTATAATCATCAAGAGGCTGCCAAGTATGAAAATCATACTGAGAACGCTCTTCTAATGTATATGGCATGTACACATGCCAGTAATCCTGTGTATGCAACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAGAATTAATAAATATTGAATTTTATTATATGGGATAATTCGGCATCAATTGTGCCTTCTAATACATTGTACAATACATGAGACATTGCCCTAATTACATTATTAATACTAATAACTCCTAAACTATTTAAATATTTCATACATTGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCAGATTCGGCAAATTAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGGACTTGTATGGTGATTATGTCGTTGTTGGATAGAAATGGTCTCTCGTGGTGTTGGGATATCTTGAAATAGAGGGGATTTTTGACCGTCCAAATATACACGCCACTCTCTTCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTGATGCGCAGTCAAGTCCAAAATAGTAAGAGCAACCGCAGGGAAGATCTATCCTACGTCTGCGAACTGGTCTCTTCTTGGCTATTCTGTGCTGGACTTTGATGGGTACCTGAGTACAACGGCTCGGTGAGGGTGAAGAATTCTGCATTCTTTATGCCCAGATCTTTTAGTGCTGAATTCTTTTCCTCATCCAAGTACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCTCTATGACTATACTGACGGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGATACCCAGCATTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAGGGAGAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAGTACATAATCTTTGGGTGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCTTGCGTTAAGTGCTGTGGCGTAAGCGTCATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCATGAAGTTCCCTGCAGACTCTTATGTATTTTTTGTTTACTGGGGTTTGTAGGTTTTCTAATTGTGAGAGGGCTTCTTCTTTAGTTAGAGAGCATTTGGGATAAGTGAGAAAATAGTTTTTTGCATTTAATCTAAAAACGTCCGCACGTGGCATTTTGGCAATCGGTGTACAAACTAATTCTATGGCAATCGGTGTATTGGGGTGCAATATATATGTGTACACCAAATGGCATTATTGTAATTTGGGAAAGAAATTCAAAATTCAAATTTCAAAATTCCCAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_002775431.1
|
|
Location
|
133-483 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCACTTCTCAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTGCAGTTAGTAGAAAATACGTATTCTCCAGACACATTAGGTTACGATTTAATTCGTGATTTAATATTAGTTATCCGTGCAAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRFQGSSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHVQKAQDVQTVQKP |
|
NCBI Accession
|
YP_002775432.1
|
|
Location
|
275-688 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 protein |
|
Coding Region
|
ATGATTCTTGGTCTTGATGTTCTCATCCATCCAGATCTTACCCAAAACATAAATAGACTTCACACAAAATCTCTTACCCACACGGTGAGTAAGCCCATTACCACGAGTAACATCAGAAACACATATCACCTTGCCTGTATGGGCTATATCATGTCTCTGTTCATAAGACTGGACCTTACACGGACCTTCGCACCCCTTGGGAACATCAGGGCTTCTGTACAGTCTGTACATCTTGGGCTTTTTGTACATGGGCCGATTGACCCATGTCCTCCTTTTGTTTGTGACGAGGACAGTGGGGGCAACAGCACGGCTGACATATGGGCTGTCGAAGTTCAGCCGGCGACGAACCTTGGAAGCGGGAGTGGAAATGACTATATCGGCGGGACGCTTCGACATAATCTCTTGCACGGATAA |
|
Protein Sequence
|
MILGLDVLIHPDLTQNINRLHTKSLTHTVSKPITTSNIRNTYHLACMGYIMSLFIRLDLTRTFAPLGNIRASVQSVHLGLFVHGPIDPCPPFVCDEDSGGNSTADIWAVEVQPATNLGSGSGNDYIGGTLRHNLLHG |
|
NCBI Accession
|
YP_002775433.1
|
|
Location
|
293-1066 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCTTCCAAGGTTCGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATGTACAGACTGTACAGAAGCCCTGATGTTCCCAAGGGGTGCGAAGGTCCGTGTAAGGTCCAGTCTTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTGATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCACCGTGTGGGTAAGAGATTTTGTGTGAAGTCTATTTATGTTTTGGGTAAGATCTGGATGGATGAGAACATCAAGACCAAGAATCATACGAACACTGTTATGTTCTTCCTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGATTTTGGACAGGTTTTCAACATGTATGACAATGAACCCAGTACTGCAACTGTCAAGAATGATATGAGAGATCGATTTCAGGTCTTAAGGAAATTTACTGCAACGGTTACAGGTGGTCAGTATGCTTCCAAGGAACAGGCATTAGTTAGGAAATTTATGAAGATTAATAATTATGTAGTGTATAATCATCAAGAGGCTGCCAAGTATGAAAATCATACTGAGAACGCTCTTCTAATGTATATGGCATGTACACATGCCAGTAATCCTGTGTATGCAACTTTGAAGATCAGAATCTATTTTTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAVAPTVLVTNKRRTWVNRPMYKKPKMYRLYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLMYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_002775434.1
|
|
Location
|
1063-1467 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGAAGAGAGTGGCGTGTATATTTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAACACCACGAGAGACCATTTCTATCCAACAACGACATAATCACCATACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAAATATCAATGTATGAAATATTTAAATAGTTTAGGAGTTATTAGTATTAATAATGTAATTAGGGCAATGTCTCATGTATTGTACAATGTATTAGAAGGCACAATTGATGCCGAATTATCCCATATAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITATQEESGVYIWTVKNPLYFKISQHHERPFLSNNDIITIQVQFNYNLRKALGIHQCFLICRIWTRLRPQTWRFLRVFKYQCMKYLNSLGVISINNVIRAMSHVLYNVLEGTIDAELSHIIKFNIY |
|
NCBI Accession
|
YP_002775435.1
|
|
Location
|
1208-1615 |
|
Gene Name
|
AC2 |
|
Protein Name
|
trans-activator protein |
|
Coding Region
|
ATGCAGAATTCTTCACCCTCACCGAGCCGTTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGACGTAGGATAGATCTTCCCTGCGGTTGCTCTTACTATTTTGGACTTGACTGCGCATCACATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGAAGAGAGTGGCGTGTATATTTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAACACCACGAGAGACCATTTCTATCCAACAACGACATAATCACCATACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQNSSPSPSRCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGLDCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPTPRETISIQQRHNHHTSPVQLQPEESVGDTPVFSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_002775436.1
|
|
Location
|
1521-2603 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication initiation protein |
|
Coding Region
|
ATGCCACGTGCGGACGTTTTTAGATTAAATGCAAAAAACTATTTTCTCACTTATCCCAAATGCTCTCTAACTAAAGAAGAAGCCCTCTCACAATTAGAAAACCTACAAACCCCAGTAAACAAAAAATACATAAGAGTCTGCAGGGAACTTCATGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCCACAGCACTTAACGCAAGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCACCCAAAGATTATGTACTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCCTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGTATCAGAAAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCCGTCAGTATAGTCATAGAGGGTGAGAGTAGAACAGGGAAGACCATGTGGGCCAGGTCTCTGGGTCCACATAACTATTTATGTGGTCACCTTGACCTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAGGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATGCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGCCCGACATCATCATATAAAGAGTACTTGGATGAGGAAAAGAATTCAGCACTAAAAGATCTGGGCATAAAGAATGCAGAATTCTTCACCCTCACCGAGCCGTTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGACGTAG |
|
Protein Sequence
|
MPRADVFRLNAKNYFLTYPKCSLTKEEALSQLENLQTPVNKKYIRVCRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQTANDAYATALNASSKSEALRVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDLGIKNAEFFTLTEPLYSGTHQSPAQNSQEETSSQT |
|
NCBI Accession
|
YP_002775437.1
|
|
Location
|
2144-2452 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAGAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGGAAATACCAGTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCCACAGCACTTAACGCAAGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG |
|
Protein Sequence
|
MRMGNLIFTCSSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSMEDLQEGVNRQPMTLTPQHLTQAVSQRLLESLRN |