Tomato leaf curl Nigeria virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000883635.1
Isolate Nigeria
Release date 2015/2/22
Submitter Kon,T., Rojas,M.R., Gilbertson,R.L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_012206
ACCGGTGGGCGCGAAAAAAAAAAAAGTGGTCCCCTTACACGCTCGAAAGCAAAAGTAAAGAAATCAGTGGTCCCCGTCCACTAATAAATGTCAGCCAATCAGAATGAAGCCTGAAAGCTTTCTTATTTAGATTTTGTTTTTATATACTTCCTCGCCAAGTAGTTATTATTGCAACATGTGGGATCCATTATTGAACGAGTTCCCAGACTCGGTTCATGGTTTTCGTTGTATGCTGGGTATAAAATATCTACAGCTTTTAGAAGAGGAGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGAGATCTCATATCTGTCATTCGGGCTAAGAATTATGTCGAAGCGACCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCCTACACCAGCCGTGCTGCTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACTTATCGGCCCATGTATCGAAAGCCCAGAATGTACCGGATGTTCAGAACCCCTGACATCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCGTATGAGCAGAGAGATGATGTCAAGCACGTGGGTATAGTTCGATGTGTTAGTGATGTGACCCGTGGGTCCGGTCTGACTCATAGAGTAGGGAAGAGATTTTGCATTAAGTCTATTTATATATTAGGTAAAGTTTGGATGGACGAAAACATCAAGAAGCAGAATCATACTAACAATGTTATGTTTTTCTTAGTTCGTGATCGTAGGCCTTATGGCAGCCCAAGTGATTTTGGACAGATTTTTAACATGTTTGACAACGAGCCCAGTACAGCCACAATCAAGAATGATCTCAGAGACCGTTATCAAGTGCTGCGTAAATTCAGTGCTACTGTTATTGGTGGTCCCTCTGGATGCAAGGAACAGGCTTTAGTGAAGAGATTTTTTAAAGTAAACAATCATGTCGTTTATAATCATCAGGAGGAGGCTAAATATGCCAACCATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTGAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAATAAATATTAAATTTTATTTCATGTGTTTCGACAACGTCGATTGTATTTACAAGAACGTTATACAGTACATGATCAACAGCTCTAATAATTGTATTAATTGAAATTACACCCAAATTATCTAAATACTTTAACACTTGAACCCTAAATACCCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGACTTTGAAGTTCAGAAAACACTTGTGAATCCCCAACGCCTTCCGCAGGTTGTGGTTGAACCTGATTTGTACTGTGATTATGTCGTGTTGGTAGTTGAACGGTCTCTCGTCGTGGTTGGTTATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAAAACGCCATTCCGAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTACTGCAGTTAATATGTATGAAGTACGAGCACCCGCACTCTAAGTCCACTCTCTTACGCCTCACTACTTTCTTCTTCGCGATGCGGTGCTGGACTTTGATGGGCACTTGAGTAGAGTGGCTCGTTGAGGGTGACGAAGGTCGCATTTTTTATAGCCCAGGCTTTTAGTGATGCATTCTTTTCCTCGTCTAGATACTCTTTATATGATGATGTTGGACCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTGAAGTGTTTGAGGTAATGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGGCTAAGATCAAGATGCCCACACAAGTAATTGTGTGGACCTAATGACCTAGCCCACATCGTCTTGCCGGTACGACTATCACCCTCAATAACAATACTATTCGGTCTCCATGGCCGCGCAGCGGCATCGCTCACATTCTCAGAGACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAACATAAAAAAGGAGAAACATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTATTATTTAAATTATGAAATTGTAATACAAAATCTTTGGGAGCTAATTCCCGTATAACCCTAAGAGCCTCTGCCTTACTTCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTCTTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGTGTATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGACACCAGGTCGAAGAATCTCTGATTTTGGCAGTTGTATTTGCCTTCGAACTGCAGAAGCACGTGAAGATGAGGCTGGCCATCCTCGTGAAGTTCTCTGCAGATCTTGATATATTTTTTATTCGTTGGGGTTTCTAGTTTTAGAAGTTGCTCTAGGGCTTCTTCTTTAGAAATAGAGCATTTTGGGAAAGTGAGGAAGTAGTTTTTGGAATTTATTCTAAATTTCTTTGGAGGAGCCATATGGTCAACTAGCACCAATTGACTGCCCTGGATACTTCTCCCCTGTTAATTGGGGTTCTATATATACTTAGCACCAAATGGCATAATGGTAATACTCCCAAAAAATTTGAACCCCCAAAGCGCCCACCGAATAATATT

Gene Information

NCBI Accession YP_002643045.1
Location 176-526
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTATTGAACGAGTTCCCAGACTCGGTTCATGGTTTTCGTTGTATGCTGGGTATAAAATATCTACAGCTTTTAGAAGAGGAGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGAGATCTCATATCTGTCATTCGGGCTAAGAATTATGTCGAAGCGACCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCCTACACCAGCCGTGCTGCTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACTTATCGGCCCATGTATCGAAAGCCCAGAATGTACCGGATGTTCAGAACCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLGIKYLQLLEEEYEPNTLGHDLIRDLISVIRAKNYVEATRRYNNFHARLEGASSSELRQPLHQPCCCPHCPRHKQASFVDLSAHVSKAQNVPDVQNP

NCBI Accession YP_002643046.1
Location 336-1109
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCCTACACCAGCCGTGCTGCTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACTTATCGGCCCATGTATCGAAAGCCCAGAATGTACCGGATGTTCAGAACCCCTGACATCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCGTATGAGCAGAGAGATGATGTCAAGCACGTGGGTATAGTTCGATGTGTTAGTGATGTGACCCGTGGGTCCGGTCTGACTCATAGAGTAGGGAAGAGATTTTGCATTAAGTCTATTTATATATTAGGTAAAGTTTGGATGGACGAAAACATCAAGAAGCAGAATCATACTAACAATGTTATGTTTTTCTTAGTTCGTGATCGTAGGCCTTATGGCAGCCCAAGTGATTTTGGACAGATTTTTAACATGTTTGACAACGAGCCCAGTACAGCCACAATCAAGAATGATCTCAGAGACCGTTATCAAGTGCTGCGTAAATTCAGTGCTACTGTTATTGGTGGTCCCTCTGGATGCAAGGAACAGGCTTTAGTGAAGAGATTTTTTAAAGTAAACAATCATGTCGTTTATAATCATCAGGAGGAGGCTAAATATGCCAACCATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTGAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPTVRGISKRRSWTYRPMYRKPRMYRMFRTPDIPRGCEGPCKVQSYEQRDDVKHVGIVRCVSDVTRGSGLTHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGSPSDFGQIFNMFDNEPSTATIKNDLRDRYQVLRKFSATVIGGPSGCKEQALVKRFFKVNNHVVYNHQEEAKYANHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession YP_002643047.1
Location 1106-1510
Gene Name C3
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAAGCTCGGAATGGCGTTTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATAACCAACCACGACGAGAGACCGTTCAACTACCAACACGACATAATCACAGTACAAATCAGGTTCAACCACAACCTGCGGAAGGCGTTGGGGATTCACAAGTGTTTTCTGAACTTCAAAGTCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGGGTTCAAGTGTTAAAGTATTTAGATAATTTGGGTGTAATTTCAATTAATACAATTATTAGAGCTGTTGATCATGTACTGTATAACGTTCTTGTAAATACAATCGACGTTGTCGAAACACATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAHQARNGVFIWEIQNPLYFKITNHDERPFNYQHDIITVQIRFNHNLRKALGIHKCFLNFKVWTSLRPQTGRFLRVFRVQVLKYLDNLGVISINTIIRAVDHVLYNVLVNTIDVVETHEIKFNIY

NCBI Accession YP_002643048.1
Location 1251-1658
Gene Name C2
Protein Name TrAP
Coding Region ATGCGACCTTCGTCACCCTCAACGAGCCACTCTACTCAAGTGCCCATCAAAGTCCAGCACCGCATCGCGAAGAAGAAAGTAGTGAGGCGTAAGAGAGTGGACTTAGAGTGCGGGTGCTCGTACTTCATACATATTAACTGCAGTAACCATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAAGCTCGGAATGGCGTTTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATAACCAACCACGACGAGAGACCGTTCAACTACCAACACGACATAATCACAGTACAAATCAGGTTCAACCACAACCTGCGGAAGGCGTTGGGGATTCACAAGTGTTTTCTGAACTTCAAAGTCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSTSHSTQVPIKVQHRIAKKKVVRRKRVDLECGCSYFIHINCSNHGFTHRGTHHCASSSEWRFYLGDTKSPVFQDNQPRRETVQLPTRHNHSTNQVQPQPAEGVGDSQVFSELQSLDELTPSDWSFLKGI

NCBI Accession YP_002643049.1
Location 1567-2646
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCTCCTCCAAAGAAATTTAGAATAAATTCCAAAAACTACTTCCTCACTTTCCCAAAATGCTCTATTTCTAAAGAAGAAGCCCTAGAGCAACTTCTAAAACTAGAAACCCCAACGAATAAAAAATATATCAAGATCTGCAGAGAACTTCACGAGGATGGCCAGCCTCATCTTCACGTGCTTCTGCAGTTCGAAGGCAAATACAACTGCCAAAATCAGAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGATACACTCGAATGGGGAGAGTTCCAGATCGATGGGAGATCTGCAAGAGGAGGGCAACAGACAGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATACGGGAATTAGCTCCCAAAGATTTTGTATTACAATTTCATAATTTAAATAATAATTTAGATAGAATTTTTCAGGAGCCTCCGGCTCCTTATGTTTCTCCTTTTTTATGTTCTTCTTTTAATCAAGTTCCGGAAGAACTTGAAGAGTGGGTCTCTGAGAATGTGAGCGATGCCGCTGCGCGGCCATGGAGACCGAATAGTATTGTTATTGAGGGTGATAGTCGTACCGGCAAGACGATGTGGGCTAGGTCATTAGGTCCACACAATTACTTGTGTGGGCATCTTGATCTTAGCCCAAAGGTGTATTCAAATGATGCTTGGTATAACGTCATTGATGACGTCGATCCCCATTACCTCAAACACTTCAAAGAATTTATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGTCCAACATCATCATATAAAGAGTATCTAGACGAGGAAAAGAATGCATCACTAAAAGCCTGGGCTATAAAAAATGCGACCTTCGTCACCCTCAACGAGCCACTCTACTCAAGTGCCCATCAAAGTCCAGCACCGCATCGCGAAGAAGAAAGTAGTGAGGCGTAA
Protein Sequence MAPPKKFRINSKNYFLTFPKCSISKEEALEQLLKLETPTNKKYIKICRELHEDGQPHLHVLLQFEGKYNCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFHNLNNNLDRIFQEPPAPYVSPFLCSSFNQVPEELEEWVSENVSDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNASLKAWAIKNATFVTLNEPLYSSAHQSPAPHREEESSEA

NCBI Accession YP_002643050.1
Location 2187-2489
Gene Name C4
Protein Name C4 protein
Coding Region ATGGCCAGCCTCATCTTCACGTGCTTCTGCAGTTCGAAGGCAAATACAACTGCCAAAATCAGAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGATACACTCGAATGGGGAGAGTTCCAGATCGATGGGAGATCTGCAAGAGGAGGGCAACAGACAGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATACGGGAATTAG
Protein Sequence MASLIFTCFCSSKANTTAKIRDSSTWCPQPGQHISIQTYRELNPAPTSSPTSTRMEIHSNGESSRSMGDLQEEGNRQPMTLTPQRLTQEVRQRLLGLYGN

References More References in PubMed

1

Metagenomic analyses and genetic diversity of Tomato leaf curl Arusha virus affecting tomato plants in Kenya.

Avedi EK, et al.  Virol J. 2021 Jan 6;18(1):2. doi: 10.1186/s12985-020-01466-z.

PMID: 33407584
2

Development of a New Molecular Marker for the Resistance to Tomato Yellow Leaf Curl Virus.

Nevame AYM, et al.  Biomed Res Int. 2018 Jul 17;2018:8120281. doi: 10.1155/2018/8120281. eCollection 2018.

PMID: 30105248
3

Two genetically related begomoviruses causing tomato leaf curl disease in Togo and Nigeria differ in virulence and host range but do not require a betasatellite for induction of disease symptoms.

Kon T, et al.  Arch Virol. 2012 Jan;157(1):107-20. doi: 10.1007/s00705-011-1139-0. Epub 2011 Nov 5.

PMID: 22057578
4

Mixed infection by two West African tomato-infecting begomoviruses and ageratum leaf curl Cameroon betasatellite in tomato in Cameroon.

Leke WN, et al.  Arch Virol. 2014 Nov;159(11):3145-8. doi: 10.1007/s00705-014-2159-3. Epub 2014 Jul 10.

PMID: 25008895
5

Genetics and Genomics of Cotton Leaf Curl Disease, Its Viral Causal Agents and Whitefly Vector: A Way Forward to Sustain Cotton Fiber Security.

Rahman MU, et al.  Front Plant Sci. 2017 Jul 4;8:1157. doi: 10.3389/fpls.2017.01157. eCollection 2017.

PMID: 28725230
6

Phylogenetic analysis and inflow route of Tomato yellow leaf curl virus (TYLCV) and Bemisia tabaci in Korea.

Lee H, et al.  Mol Cells. 2010 Nov;30(5):467-76. doi: 10.1007/s10059-010-0143-7. Epub 2010 Oct 14.

PMID: 20981497
7

Nucleotide sequences from tomato leaf curl viruses from different countries: evidence for three geographically separate branches in evolution of the coat protein of whitefly-transmitted geminiviruses.

Hong YG, et al.  J Gen Virol. 1995 Aug;76 ( Pt 8):2043-9. doi: 10.1099/0022-1317-76-8-2043.

PMID: 7636485
8

First report of a complete genome sequence for a begomovirus infecting Jatropha gossypifolia in the Americas.

Simmonds-Gordon RN, et al.  Arch Virol. 2014 Oct;159(10):2815-8. doi: 10.1007/s00705-014-2112-5. Epub 2014 May 29.

PMID: 24872185
9

Association of a Begomovirus and Nanovirus-like Molecule with Ageratum Yellow Vein Disease in Pakistan.

Mansoor S, et al.  Plant Dis. 2000 Jan;84(1):101. doi: 10.1094/PDIS.2000.84.1.101A.

PMID: 30841203
10

Molecular identification of a new begomovirus associated with mosaic disease of Jatropha curcas L. in Nigeria.

Kashina BD, et al.  Arch Virol. 2013 Feb;158(2):511-4. doi: 10.1007/s00705-012-1512-7. Epub 2012 Oct 17.

PMID: 23074041