Tomato leaf curl New Delhi virus 5

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004786775.1
Isolate Bangladesh
Release date 2021/6/1
Submitter Monger,W.A., Mumford,R., Kelly,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055126
ACCGAATGGCCGCGAAAATTTTGGTGGGCCCTCAACCAACGAAATGCAAGCTACATGGCTTATTTAGTGCGGGGGGACCATTAAATAGCCTTGCTGACGAAGTTTAGGTCCACAAACATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTAATCCTTACATCACATGATGGCAATACATCAATAGTCTTTTCTAAAACATTATCCAATACATGATAGGCTGCTCTTATTACATTCGAAATTCCTATTACACCAAGCTCATGGAGGTATTTAAGGACCTGTGTCTTAAATACCCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATTTGGAAAATTAGAAAACACTTGTGAAGCCCCAGAGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGGAGGTGGATGATGTCGTGATTCGTGAGGCATGGTCTGCTGTCGTGTTTCAATATTTTGAAATACAGGGGATTTGGAACGTCCCAAATAAACACGCCACTCTCTACTCGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGACAGTTGATTGATATGTAGTACGAACAACCACACTGCAGATCAACTCGCCTCCTGCGTATGTTCTTCTTCTTCTTCTGGGGGACTGATGTTTTCGCGACCGGAATAGAGTGGTTCTTGGAGTGTGACGAAGACTGCATTCTTGATAGCCCACTGTTTCAGTGATGCATTTTTTTCTTCGTCGAGATATTCCTTATAGCTGCTGTTTGGTCCTTTATTGCAGAGGAAGATGGTGGGAATACCGCCTTTAATCATGACCGGCTTTCCGTACTTCGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCACGCTTCATTATTGTACACTTTCGGGCTGAGATCCAGATGACCACACAAGTAATTGTGGGGTCCTAGTGAACGTGCCCACATTGTCTTTCCCGTTCTACTATCCCCCTCTATTACTACGCTTATTGGTCTAAAAGGCCGCGCAGCGGCAGACAATACATTGGACTGAACCCAATCGACGAGTTCTGGAGGAACTGTGTCGAAGGAAGTAGTTGAGAATGGAGATACATAGACCTCAGAACGTGGTTGAAAAATGCGATCTAAATTCGTCATTAAATTATGGAACTGCAGAACATAATCTTTTGGTGCTAGTTCTTTTAGTACTTTCAATGCATCTTCTTTGTTTCCGGTGTTAATTGCCTGAGCGTATGCATCGTTTGCCGTCTGTTGACCCCCACGAGCAGATCGTCCGTCGATCTGGAAAACACCCCATTCTAGCACGTCTCCGTCTTTGTCGATATATGCCTTGACGTCGGACGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGAGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAATTGAATGAGAACATGGATATGCGGAGACCCATCCTCGTGACTCTCTCTACAGATTTTGATGAATTTCTTGCAAGTAGGGGTTTCTAGGTTTATTAATTGGGAAAGTGCCTCTTCCTTTGTAAGAGAGCATTTTGGGTAAGTGAGGAAATAGTTTTTGGCATTAATTCTAAAACGACTTGGCGGAGCCATATAAAATGTCGTTTCGATCCGGTGTCTCTCAACTTTCTCTATGTAATTGGTGTCTGGAGTCCCATATATAGTTAGGACACCATATGGCACTATTGTAATTTCTGAAAGTAAATTACTTTAATTCAAATTGCGTAAAGCGGCCATTCGTATAATATT

Gene Information

NCBI Accession YP_010084316.1
Location 118-447
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAG
Protein Sequence MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVVRAKNYVEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGVDKQADEQKAQNV

NCBI Accession YP_010084317.1
Location 278-1048
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010084318.1
Location 308-793
Gene Name AC5
Protein Name AC5
Coding Region ATGCATGTTCTTCACCGTTGCGGTGCTCGGTTCATTGTCAAACATGTTGAACACTTCACCAAAATCCTGTGGCGATCCCGTAGGACGACGGTCACGAACCAAGAAAAACATCACACTGTTCGTGTGGTTTTTAGTCTTTATGTTTTCATCCATCCATATCTTCCCCAATACATACACAGATTTCACACAGAAACGCTTCCCCACGCGATGAGTCAGTCCGGTTCCTCGGGTAACGTCACTGACACACATGACTTTGCCAATATGAGACACATCGTGCCTAGATTCAAAAGACTGCACCTTACAAGGACCTTCACATCCCCTTGGCACGTCGGGGCTTCTGTACATTCTATACATTCTGGGCTTTCTGTTCATCGGCCTGTTTGTCCACGCCTTTGCTTTTGTGACGCGGGCAATGGGGACAACTGCACGAGCTCCATAAGGGCTGTCGAAGTTGAGACGTCGGCGTACCTTCGATGCGGGAGTTGA
Protein Sequence MHVLHRCGARFIVKHVEHFTKILWRSRRTTVTNQEKHHTVRVVFSLYVFIHPYLPQYIHRFHTETLPHAMSQSGSSGNVTDTHDFANMRHIVPRFKRLHLTRTFTSPWHVGASVHSIHSGLSVHRPVCPRLCFCDAGNGDNCTSSIRAVEVETSAYLRCGS

NCBI Accession YP_010084319.1
Location 1045-1455
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAAGACACAGGTCCTTAAATACCTCCATGAGCTTGGTGTAATAGGAATTTCGAATGTAATAAGAGCAGCCTATCATGTATTGGATAATGTTTTAGAAAAGACTATTGATGTATTGCCATCATGTGATGTAAGGATTAATATATATTAA
Protein Sequence MITDSRTGEYITADRVESGVFIWDVPNPLYFKILKHDSRPCLTNHDIIHLQIQFNHNLRKALGLHKCFLIFQIWTGLRPPTGIFLRVFKTQVLKYLHELGVIGISNVIRAAYHVLDNVLEKTIDVLPSCDVRINIY

NCBI Accession YP_010084320.1
Location 1190-1594
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGATCTGCAGTGTGGTTGTTCGTACTACATATCAATCAACTGTCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAA
Protein Sequence MQSSSHSKNHSIPVAKTSVPQKKKKNIRRRRVDLQCGCSYYISINCHDHGFTHRGVHHCGSSREWRVYLGRSKSPVFQNIETRQQTMPHESRHHPPPNTVQPQPAESSGASQVFSNFPNLDGLTPSDWDFLEGI

NCBI Accession YP_010084321.1
Location 1497-2582
Gene Name AC1
Protein Name replication initiator protein
Coding Region ATGGCTCCGCCAAGTCGTTTTAGAATTAATGCCAAAAACTATTTCCTCACTTACCCAAAATGCTCTCTTACAAAGGAAGAGGCACTTTCCCAATTAATAAACCTAGAAACCCCTACTTGCAAGAAATTCATCAAAATCTGTAGAGAGAGTCACGAGGATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAGAATGGGGTGTTTTCCAGATCGACGGACGATCTGCTCGTGGGGGTCAACAGACGGCAAACGATGCATACGCTCAGGCAATTAACACCGGAAACAAAGAAGATGCATTGAAAGTACTAAAAGAACTAGCACCAAAAGATTATGTTCTGCAGTTCCATAATTTAATGACGAATTTAGATCGCATTTTTCAACCACGTTCTGAGGTCTATGTATCTCCATTCTCAACTACTTCCTTCGACACAGTTCCTCCAGAACTCGTCGATTGGGTTCAGTCCAATGTATTGTCTGCCGCTGCGCGGCCTTTTAGACCAATAAGCGTAGTAATAGAGGGGGATAGTAGAACGGGAAAGACAATGTGGGCACGTTCACTAGGACCCCACAATTACTTGTGTGGTCATCTGGATCTCAGCCCGAAAGTGTACAATAATGAAGCGTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAATACGAAGTACGGAAAGCCGGTCATGATTAAAGGCGGTATTCCCACCATCTTCCTCTGCAATAAAGGACCAAACAGCAGCTATAAGGAATATCTCGACGAAGAAAAAAATGCATCACTGAAACAGTGGGCTATCAAGAATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGA
Protein Sequence MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLINLETPTCKKFIKICRESHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFHNLMTNLDRIFQPRSEVYVSPFSTTSFDTVPPELVDWVQSNVLSAAARPFRPISVVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNASLKQWAIKNAVFVTLQEPLYSGRENISPPEEEEEHTQEAS

NCBI Accession YP_010084322.1
Location 2249-2425
Gene Name AC4
Protein Name AC4
Coding Region ATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAG
Protein Sequence MGLRISMFSFNSKGNTSARITDSSTWYPQLGQHISIRTFRELNRRPTSRHISTKTETC

References More References in PubMed

1

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575
2

Seed Transmission of Tomato Leaf Curl New Delhi Virus from Zucchini Squash in Italy.

Kil EJ, et al.  Plants (Basel). 2020 Apr 29;9(5):563. doi: 10.3390/plants9050563.

PMID: 32365497
3

Molecular characterization and infectivity analysis of tomato leaf curl New Delhi virus isolates infecting potato.

Jeevalatha A, et al.  3 Biotech. 2021 Apr;11(4):203. doi: 10.1007/s13205-021-02752-5. Epub 2021 Mar 30.

PMID: 33927993
4

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101
5

Molecular characterization of SlATG18f in response to Tomato leaf curl New Delhi virus infection in tomato and development of a CAPS marker for leaf curl disease tolerance.

Prasad A, et al.  Theor Appl Genet. 2021 May;134(5):1463-1474. doi: 10.1007/s00122-021-03783-5. Epub 2021 Feb 7.

PMID: 33554270
6

Occurrence of Tomato Leaf Curl New Delhi Virus in Three Cucurbits Crops in Northern China and Its Fast and Accurate Detection through Heat-Labile Uracil-DNA Glycosylase Based LAMP Elucidated with Lateral Flow Dipstick.

Qiao N, et al.  Plant Dis. 2025 Sep 18. doi: 10.1094/PDIS-07-25-1386-RE. Online ahead of print.

PMID: 40968395
7

A new record of Asia II 5 genetic group of Bemisia tabaci (Gennadius) in the major potato growing areas of India and its relationship with tomato leaf curl New Delhi virus infecting potato.

Naga KC, et al.  3 Biotech. 2021 Sep;11(9):421. doi: 10.1007/s13205-021-02966-7. Epub 2021 Aug 31.

PMID: 34603921
8

Molecular evidence for the occurrence of tomato leaf curl New Delhi virus on chayote (Sechium edule) in southern India.

Nagendran K, et al.  Virusdisease. 2017 Dec;28(4):425-429. doi: 10.1007/s13337-017-0403-7. Epub 2017 Oct 9.

PMID: 29291235
9

First Report of Tomato leaf curl New Delhi virus Infecting Cucumber in Central Java, Indonesia.

Mizutani T, et al.  Plant Dis. 2011 Nov;95(11):1485. doi: 10.1094/PDIS-03-11-0196.

PMID: 30731770
10

Different Infectivity of Mediterranean and Southern Asian Tomato Leaf Curl New Delhi Virus Isolates in Cucurbit Crops.

Vo TTB, et al.  Plants (Basel). 2022 Mar 6;11(5):704. doi: 10.3390/plants11050704.

PMID: 35270174