Tomato leaf curl New Delhi virus 5

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004786775.1
Isolate Bangladesh
Release date 2021/6/1
Submitter Monger,W.A., Mumford,R., Kelly,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055126
ACCGAATGGCCGCGAAAATTTTGGTGGGCCCTCAACCAACGAAATGCAAGCTACATGGCTTATTTAGTGCGGGGGGACCATTAAATAGCCTTGCTGACGAAGTTTAGGTCCACAAACATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTAATCCTTACATCACATGATGGCAATACATCAATAGTCTTTTCTAAAACATTATCCAATACATGATAGGCTGCTCTTATTACATTCGAAATTCCTATTACACCAAGCTCATGGAGGTATTTAAGGACCTGTGTCTTAAATACCCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATTTGGAAAATTAGAAAACACTTGTGAAGCCCCAGAGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGGAGGTGGATGATGTCGTGATTCGTGAGGCATGGTCTGCTGTCGTGTTTCAATATTTTGAAATACAGGGGATTTGGAACGTCCCAAATAAACACGCCACTCTCTACTCGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGACAGTTGATTGATATGTAGTACGAACAACCACACTGCAGATCAACTCGCCTCCTGCGTATGTTCTTCTTCTTCTTCTGGGGGACTGATGTTTTCGCGACCGGAATAGAGTGGTTCTTGGAGTGTGACGAAGACTGCATTCTTGATAGCCCACTGTTTCAGTGATGCATTTTTTTCTTCGTCGAGATATTCCTTATAGCTGCTGTTTGGTCCTTTATTGCAGAGGAAGATGGTGGGAATACCGCCTTTAATCATGACCGGCTTTCCGTACTTCGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCACGCTTCATTATTGTACACTTTCGGGCTGAGATCCAGATGACCACACAAGTAATTGTGGGGTCCTAGTGAACGTGCCCACATTGTCTTTCCCGTTCTACTATCCCCCTCTATTACTACGCTTATTGGTCTAAAAGGCCGCGCAGCGGCAGACAATACATTGGACTGAACCCAATCGACGAGTTCTGGAGGAACTGTGTCGAAGGAAGTAGTTGAGAATGGAGATACATAGACCTCAGAACGTGGTTGAAAAATGCGATCTAAATTCGTCATTAAATTATGGAACTGCAGAACATAATCTTTTGGTGCTAGTTCTTTTAGTACTTTCAATGCATCTTCTTTGTTTCCGGTGTTAATTGCCTGAGCGTATGCATCGTTTGCCGTCTGTTGACCCCCACGAGCAGATCGTCCGTCGATCTGGAAAACACCCCATTCTAGCACGTCTCCGTCTTTGTCGATATATGCCTTGACGTCGGACGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGAGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAATTGAATGAGAACATGGATATGCGGAGACCCATCCTCGTGACTCTCTCTACAGATTTTGATGAATTTCTTGCAAGTAGGGGTTTCTAGGTTTATTAATTGGGAAAGTGCCTCTTCCTTTGTAAGAGAGCATTTTGGGTAAGTGAGGAAATAGTTTTTGGCATTAATTCTAAAACGACTTGGCGGAGCCATATAAAATGTCGTTTCGATCCGGTGTCTCTCAACTTTCTCTATGTAATTGGTGTCTGGAGTCCCATATATAGTTAGGACACCATATGGCACTATTGTAATTTCTGAAAGTAAATTACTTTAATTCAAATTGCGTAAAGCGGCCATTCGTATAATATT

Gene Information

NCBI Accession YP_010084316.1
Location 118-447
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAG
Protein Sequence MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVVRAKNYVEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGVDKQADEQKAQNV

NCBI Accession YP_010084317.1
Location 278-1048
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010084318.1
Location 308-793
Gene Name AC5
Protein Name AC5
Coding Region ATGCATGTTCTTCACCGTTGCGGTGCTCGGTTCATTGTCAAACATGTTGAACACTTCACCAAAATCCTGTGGCGATCCCGTAGGACGACGGTCACGAACCAAGAAAAACATCACACTGTTCGTGTGGTTTTTAGTCTTTATGTTTTCATCCATCCATATCTTCCCCAATACATACACAGATTTCACACAGAAACGCTTCCCCACGCGATGAGTCAGTCCGGTTCCTCGGGTAACGTCACTGACACACATGACTTTGCCAATATGAGACACATCGTGCCTAGATTCAAAAGACTGCACCTTACAAGGACCTTCACATCCCCTTGGCACGTCGGGGCTTCTGTACATTCTATACATTCTGGGCTTTCTGTTCATCGGCCTGTTTGTCCACGCCTTTGCTTTTGTGACGCGGGCAATGGGGACAACTGCACGAGCTCCATAAGGGCTGTCGAAGTTGAGACGTCGGCGTACCTTCGATGCGGGAGTTGA
Protein Sequence MHVLHRCGARFIVKHVEHFTKILWRSRRTTVTNQEKHHTVRVVFSLYVFIHPYLPQYIHRFHTETLPHAMSQSGSSGNVTDTHDFANMRHIVPRFKRLHLTRTFTSPWHVGASVHSIHSGLSVHRPVCPRLCFCDAGNGDNCTSSIRAVEVETSAYLRCGS

NCBI Accession YP_010084319.1
Location 1045-1455
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAAGACACAGGTCCTTAAATACCTCCATGAGCTTGGTGTAATAGGAATTTCGAATGTAATAAGAGCAGCCTATCATGTATTGGATAATGTTTTAGAAAAGACTATTGATGTATTGCCATCATGTGATGTAAGGATTAATATATATTAA
Protein Sequence MITDSRTGEYITADRVESGVFIWDVPNPLYFKILKHDSRPCLTNHDIIHLQIQFNHNLRKALGLHKCFLIFQIWTGLRPPTGIFLRVFKTQVLKYLHELGVIGISNVIRAAYHVLDNVLEKTIDVLPSCDVRINIY

NCBI Accession YP_010084320.1
Location 1190-1594
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGATCTGCAGTGTGGTTGTTCGTACTACATATCAATCAACTGTCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAA
Protein Sequence MQSSSHSKNHSIPVAKTSVPQKKKKNIRRRRVDLQCGCSYYISINCHDHGFTHRGVHHCGSSREWRVYLGRSKSPVFQNIETRQQTMPHESRHHPPPNTVQPQPAESSGASQVFSNFPNLDGLTPSDWDFLEGI

NCBI Accession YP_010084321.1
Location 1497-2582
Gene Name AC1
Protein Name replication initiator protein
Coding Region ATGGCTCCGCCAAGTCGTTTTAGAATTAATGCCAAAAACTATTTCCTCACTTACCCAAAATGCTCTCTTACAAAGGAAGAGGCACTTTCCCAATTAATAAACCTAGAAACCCCTACTTGCAAGAAATTCATCAAAATCTGTAGAGAGAGTCACGAGGATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAGAATGGGGTGTTTTCCAGATCGACGGACGATCTGCTCGTGGGGGTCAACAGACGGCAAACGATGCATACGCTCAGGCAATTAACACCGGAAACAAAGAAGATGCATTGAAAGTACTAAAAGAACTAGCACCAAAAGATTATGTTCTGCAGTTCCATAATTTAATGACGAATTTAGATCGCATTTTTCAACCACGTTCTGAGGTCTATGTATCTCCATTCTCAACTACTTCCTTCGACACAGTTCCTCCAGAACTCGTCGATTGGGTTCAGTCCAATGTATTGTCTGCCGCTGCGCGGCCTTTTAGACCAATAAGCGTAGTAATAGAGGGGGATAGTAGAACGGGAAAGACAATGTGGGCACGTTCACTAGGACCCCACAATTACTTGTGTGGTCATCTGGATCTCAGCCCGAAAGTGTACAATAATGAAGCGTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAATACGAAGTACGGAAAGCCGGTCATGATTAAAGGCGGTATTCCCACCATCTTCCTCTGCAATAAAGGACCAAACAGCAGCTATAAGGAATATCTCGACGAAGAAAAAAATGCATCACTGAAACAGTGGGCTATCAAGAATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGA
Protein Sequence MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLINLETPTCKKFIKICRESHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFHNLMTNLDRIFQPRSEVYVSPFSTTSFDTVPPELVDWVQSNVLSAAARPFRPISVVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNASLKQWAIKNAVFVTLQEPLYSGRENISPPEEEEEHTQEAS

NCBI Accession YP_010084322.1
Location 2249-2425
Gene Name AC4
Protein Name AC4
Coding Region ATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAG
Protein Sequence MGLRISMFSFNSKGNTSARITDSSTWYPQLGQHISIRTFRELNRRPTSRHISTKTETC

References More References in PubMed

1

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575
2

Begomovirus Tomato Leaf Curl New Delhi Virus Is Seedborne but Not Seed Transmitted in Melon.

Fortes IM, et al.  Plant Dis. 2023 Feb;107(2):473-479. doi: 10.1094/PDIS-09-21-1930-RE. Epub 2023 Feb 15.

PMID: 35771117
3

Seed Transmission of Tomato Leaf Curl New Delhi Virus from Zucchini Squash in Italy.

Kil EJ, et al.  Plants (Basel). 2020 Apr 29;9(5):563. doi: 10.3390/plants9050563.

PMID: 32365497
4

Molecular characterization and infectivity analysis of tomato leaf curl New Delhi virus isolates infecting potato.

Jeevalatha A, et al.  3 Biotech. 2021 Apr;11(4):203. doi: 10.1007/s13205-021-02752-5. Epub 2021 Mar 30.

PMID: 33927993
5

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101
6

Molecular characterization of SlATG18f in response to Tomato leaf curl New Delhi virus infection in tomato and development of a CAPS marker for leaf curl disease tolerance.

Prasad A, et al.  Theor Appl Genet. 2021 May;134(5):1463-1474. doi: 10.1007/s00122-021-03783-5. Epub 2021 Feb 7.

PMID: 33554270
7

A new record of Asia II 5 genetic group of Bemisia tabaci (Gennadius) in the major potato growing areas of India and its relationship with tomato leaf curl New Delhi virus infecting potato.

Naga KC, et al.  3 Biotech. 2021 Sep;11(9):421. doi: 10.1007/s13205-021-02966-7. Epub 2021 Aug 31.

PMID: 34603921
8

Different Infectivity of Mediterranean and Southern Asian Tomato Leaf Curl New Delhi Virus Isolates in Cucurbit Crops.

Vo TTB, et al.  Plants (Basel). 2022 Mar 6;11(5):704. doi: 10.3390/plants11050704.

PMID: 35270174
9

Genomic dissection of ROS detoxifying enzyme encoding genes for their role in antioxidative defense mechanism against Tomato leaf curl New Delhi virus infection in tomato.

Sharma N, et al.  Genomics. 2021 May;113(3):889-899. doi: 10.1016/j.ygeno.2021.01.022. Epub 2021 Jan 30.

PMID: 33524498
10

First Detection of Tomato leaf curl New Delhi virus Infecting Zucchini in Spain.

Juárez M, et al.  Plant Dis. 2014 Jun;98(6):857. doi: 10.1094/PDIS-10-13-1050-PDN.

PMID: 30708660