Tomato leaf curl New Delhi virus 5

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004786775.1
Isolate Bangladesh
Release date 2021/6/1
Submitter Monger,W.A., Mumford,R., Kelly,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055126
ACCGAATGGCCGCGAAAATTTTGGTGGGCCCTCAACCAACGAAATGCAAGCTACATGGCTTATTTAGTGCGGGGGGACCATTAAATAGCCTTGCTGACGAAGTTTAGGTCCACAAACATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTAATCCTTACATCACATGATGGCAATACATCAATAGTCTTTTCTAAAACATTATCCAATACATGATAGGCTGCTCTTATTACATTCGAAATTCCTATTACACCAAGCTCATGGAGGTATTTAAGGACCTGTGTCTTAAATACCCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATTTGGAAAATTAGAAAACACTTGTGAAGCCCCAGAGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGGAGGTGGATGATGTCGTGATTCGTGAGGCATGGTCTGCTGTCGTGTTTCAATATTTTGAAATACAGGGGATTTGGAACGTCCCAAATAAACACGCCACTCTCTACTCGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGACAGTTGATTGATATGTAGTACGAACAACCACACTGCAGATCAACTCGCCTCCTGCGTATGTTCTTCTTCTTCTTCTGGGGGACTGATGTTTTCGCGACCGGAATAGAGTGGTTCTTGGAGTGTGACGAAGACTGCATTCTTGATAGCCCACTGTTTCAGTGATGCATTTTTTTCTTCGTCGAGATATTCCTTATAGCTGCTGTTTGGTCCTTTATTGCAGAGGAAGATGGTGGGAATACCGCCTTTAATCATGACCGGCTTTCCGTACTTCGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCACGCTTCATTATTGTACACTTTCGGGCTGAGATCCAGATGACCACACAAGTAATTGTGGGGTCCTAGTGAACGTGCCCACATTGTCTTTCCCGTTCTACTATCCCCCTCTATTACTACGCTTATTGGTCTAAAAGGCCGCGCAGCGGCAGACAATACATTGGACTGAACCCAATCGACGAGTTCTGGAGGAACTGTGTCGAAGGAAGTAGTTGAGAATGGAGATACATAGACCTCAGAACGTGGTTGAAAAATGCGATCTAAATTCGTCATTAAATTATGGAACTGCAGAACATAATCTTTTGGTGCTAGTTCTTTTAGTACTTTCAATGCATCTTCTTTGTTTCCGGTGTTAATTGCCTGAGCGTATGCATCGTTTGCCGTCTGTTGACCCCCACGAGCAGATCGTCCGTCGATCTGGAAAACACCCCATTCTAGCACGTCTCCGTCTTTGTCGATATATGCCTTGACGTCGGACGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGAGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAATTGAATGAGAACATGGATATGCGGAGACCCATCCTCGTGACTCTCTCTACAGATTTTGATGAATTTCTTGCAAGTAGGGGTTTCTAGGTTTATTAATTGGGAAAGTGCCTCTTCCTTTGTAAGAGAGCATTTTGGGTAAGTGAGGAAATAGTTTTTGGCATTAATTCTAAAACGACTTGGCGGAGCCATATAAAATGTCGTTTCGATCCGGTGTCTCTCAACTTTCTCTATGTAATTGGTGTCTGGAGTCCCATATATAGTTAGGACACCATATGGCACTATTGTAATTTCTGAAAGTAAATTACTTTAATTCAAATTGCGTAAAGCGGCCATTCGTATAATATT

Gene Information

NCBI Accession YP_010084316.1
Location 118-447
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAG
Protein Sequence MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVVRAKNYVEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGVDKQADEQKAQNV

NCBI Accession YP_010084317.1
Location 278-1048
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010084318.1
Location 308-793
Gene Name AC5
Protein Name AC5
Coding Region ATGCATGTTCTTCACCGTTGCGGTGCTCGGTTCATTGTCAAACATGTTGAACACTTCACCAAAATCCTGTGGCGATCCCGTAGGACGACGGTCACGAACCAAGAAAAACATCACACTGTTCGTGTGGTTTTTAGTCTTTATGTTTTCATCCATCCATATCTTCCCCAATACATACACAGATTTCACACAGAAACGCTTCCCCACGCGATGAGTCAGTCCGGTTCCTCGGGTAACGTCACTGACACACATGACTTTGCCAATATGAGACACATCGTGCCTAGATTCAAAAGACTGCACCTTACAAGGACCTTCACATCCCCTTGGCACGTCGGGGCTTCTGTACATTCTATACATTCTGGGCTTTCTGTTCATCGGCCTGTTTGTCCACGCCTTTGCTTTTGTGACGCGGGCAATGGGGACAACTGCACGAGCTCCATAAGGGCTGTCGAAGTTGAGACGTCGGCGTACCTTCGATGCGGGAGTTGA
Protein Sequence MHVLHRCGARFIVKHVEHFTKILWRSRRTTVTNQEKHHTVRVVFSLYVFIHPYLPQYIHRFHTETLPHAMSQSGSSGNVTDTHDFANMRHIVPRFKRLHLTRTFTSPWHVGASVHSIHSGLSVHRPVCPRLCFCDAGNGDNCTSSIRAVEVETSAYLRCGS

NCBI Accession YP_010084319.1
Location 1045-1455
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAAGACACAGGTCCTTAAATACCTCCATGAGCTTGGTGTAATAGGAATTTCGAATGTAATAAGAGCAGCCTATCATGTATTGGATAATGTTTTAGAAAAGACTATTGATGTATTGCCATCATGTGATGTAAGGATTAATATATATTAA
Protein Sequence MITDSRTGEYITADRVESGVFIWDVPNPLYFKILKHDSRPCLTNHDIIHLQIQFNHNLRKALGLHKCFLIFQIWTGLRPPTGIFLRVFKTQVLKYLHELGVIGISNVIRAAYHVLDNVLEKTIDVLPSCDVRINIY

NCBI Accession YP_010084320.1
Location 1190-1594
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGATCTGCAGTGTGGTTGTTCGTACTACATATCAATCAACTGTCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAA
Protein Sequence MQSSSHSKNHSIPVAKTSVPQKKKKNIRRRRVDLQCGCSYYISINCHDHGFTHRGVHHCGSSREWRVYLGRSKSPVFQNIETRQQTMPHESRHHPPPNTVQPQPAESSGASQVFSNFPNLDGLTPSDWDFLEGI

NCBI Accession YP_010084321.1
Location 1497-2582
Gene Name AC1
Protein Name replication initiator protein
Coding Region ATGGCTCCGCCAAGTCGTTTTAGAATTAATGCCAAAAACTATTTCCTCACTTACCCAAAATGCTCTCTTACAAAGGAAGAGGCACTTTCCCAATTAATAAACCTAGAAACCCCTACTTGCAAGAAATTCATCAAAATCTGTAGAGAGAGTCACGAGGATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAGAATGGGGTGTTTTCCAGATCGACGGACGATCTGCTCGTGGGGGTCAACAGACGGCAAACGATGCATACGCTCAGGCAATTAACACCGGAAACAAAGAAGATGCATTGAAAGTACTAAAAGAACTAGCACCAAAAGATTATGTTCTGCAGTTCCATAATTTAATGACGAATTTAGATCGCATTTTTCAACCACGTTCTGAGGTCTATGTATCTCCATTCTCAACTACTTCCTTCGACACAGTTCCTCCAGAACTCGTCGATTGGGTTCAGTCCAATGTATTGTCTGCCGCTGCGCGGCCTTTTAGACCAATAAGCGTAGTAATAGAGGGGGATAGTAGAACGGGAAAGACAATGTGGGCACGTTCACTAGGACCCCACAATTACTTGTGTGGTCATCTGGATCTCAGCCCGAAAGTGTACAATAATGAAGCGTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAATACGAAGTACGGAAAGCCGGTCATGATTAAAGGCGGTATTCCCACCATCTTCCTCTGCAATAAAGGACCAAACAGCAGCTATAAGGAATATCTCGACGAAGAAAAAAATGCATCACTGAAACAGTGGGCTATCAAGAATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGA
Protein Sequence MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLINLETPTCKKFIKICRESHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFHNLMTNLDRIFQPRSEVYVSPFSTTSFDTVPPELVDWVQSNVLSAAARPFRPISVVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNASLKQWAIKNAVFVTLQEPLYSGRENISPPEEEEEHTQEAS

NCBI Accession YP_010084322.1
Location 2249-2425
Gene Name AC4
Protein Name AC4
Coding Region ATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAG
Protein Sequence MGLRISMFSFNSKGNTSARITDSSTWYPQLGQHISIRTFRELNRRPTSRHISTKTETC

References More References in PubMed

1

Seed Transmission of Tomato Leaf Curl New Delhi Virus from Zucchini Squash in Italy.

Kil EJ, et al.  Plants (Basel). 2020 Apr 29;9(5):563. doi: 10.3390/plants9050563.

PMID: 32365497
2

Molecular characterization of SlATG18f in response to Tomato leaf curl New Delhi virus infection in tomato and development of a CAPS marker for leaf curl disease tolerance.

Prasad A, et al.  Theor Appl Genet. 2021 May;134(5):1463-1474. doi: 10.1007/s00122-021-03783-5. Epub 2021 Feb 7.

PMID: 33554270
3

Different Infectivity of Mediterranean and Southern Asian Tomato Leaf Curl New Delhi Virus Isolates in Cucurbit Crops.

Vo TTB, et al.  Plants (Basel). 2022 Mar 6;11(5):704. doi: 10.3390/plants11050704.

PMID: 35270174
4

Frequent Occurrence of Tomato Leaf Curl New Delhi Virus in Cotton Leaf Curl Disease Affected Cotton in Pakistan.

Zaidi SS, et al.  PLoS One. 2016 May 23;11(5):e0155520. doi: 10.1371/journal.pone.0155520. eCollection 2016.

PMID: 27213535
5

Role of the Sw5 Gene Cluster in the Fight against Plant Viruses.

Sharma N, et al.  J Virol. 2022 Mar 9;96(5):e0208421. doi: 10.1128/jvi.02084-21. Epub 2022 Jan 5.

PMID: 34985996
6

Interaction of ToLCNDV TrAP with SlATG8f marks it susceptible to degradation by autophagy.

Prasad A, et al.  Cell Mol Life Sci. 2022 Apr 15;79(5):241. doi: 10.1007/s00018-022-04281-7.

PMID: 35428912
7

A novel recombinant tomato-infecting begomovirus capable of transcomplementing heterologous DNA-B components.

Kumari P, et al.  Arch Virol. 2011 May;156(5):769-83. doi: 10.1007/s00705-011-0915-1. Epub 2011 Feb 11.

PMID: 21311922
8

Identification of a Major-Effect Quantitative Trait Loci Associated with Begomovirus Resistance in Cucurbita moschata.

Verma N, et al.  Phytopathology. 2023 May;113(5):824-835. doi: 10.1094/PHYTO-07-22-0240-FI. Epub 2023 Jun 23.

PMID: 37352896
9

Revealing the Complexity of Sweepovirus-Deltasatellite-Plant Host Interactions: Expanded Natural and Experimental Helper Virus Range and Effect Dependence on Virus-Host Combination.

Ferro CG, et al.  Microorganisms. 2021 May 10;9(5):1018. doi: 10.3390/microorganisms9051018.

PMID: 34068583
10

Resistant Sources and Genetic Control of Resistance to ToLCNDV in Cucumber.

Sáez C, et al.  Microorganisms. 2021 Apr 24;9(5):913. doi: 10.3390/microorganisms9050913.

PMID: 33923281