Tomato leaf curl New Delhi virus 5
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_004786775.1 |
| Isolate |
Bangladesh |
| Release date |
2021/6/1 |
| Submitter |
Monger,W.A., Mumford,R., Kelly,P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGAATGGCCGCGAAAATTTTGGTGGGCCCTCAACCAACGAAATGCAAGCTACATGGCTTATTTAGTGCGGGGGGACCATTAAATAGCCTTGCTGACGAAGTTTAGGTCCACAAACATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTAATCCTTACATCACATGATGGCAATACATCAATAGTCTTTTCTAAAACATTATCCAATACATGATAGGCTGCTCTTATTACATTCGAAATTCCTATTACACCAAGCTCATGGAGGTATTTAAGGACCTGTGTCTTAAATACCCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATTTGGAAAATTAGAAAACACTTGTGAAGCCCCAGAGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGGAGGTGGATGATGTCGTGATTCGTGAGGCATGGTCTGCTGTCGTGTTTCAATATTTTGAAATACAGGGGATTTGGAACGTCCCAAATAAACACGCCACTCTCTACTCGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGACAGTTGATTGATATGTAGTACGAACAACCACACTGCAGATCAACTCGCCTCCTGCGTATGTTCTTCTTCTTCTTCTGGGGGACTGATGTTTTCGCGACCGGAATAGAGTGGTTCTTGGAGTGTGACGAAGACTGCATTCTTGATAGCCCACTGTTTCAGTGATGCATTTTTTTCTTCGTCGAGATATTCCTTATAGCTGCTGTTTGGTCCTTTATTGCAGAGGAAGATGGTGGGAATACCGCCTTTAATCATGACCGGCTTTCCGTACTTCGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCACGCTTCATTATTGTACACTTTCGGGCTGAGATCCAGATGACCACACAAGTAATTGTGGGGTCCTAGTGAACGTGCCCACATTGTCTTTCCCGTTCTACTATCCCCCTCTATTACTACGCTTATTGGTCTAAAAGGCCGCGCAGCGGCAGACAATACATTGGACTGAACCCAATCGACGAGTTCTGGAGGAACTGTGTCGAAGGAAGTAGTTGAGAATGGAGATACATAGACCTCAGAACGTGGTTGAAAAATGCGATCTAAATTCGTCATTAAATTATGGAACTGCAGAACATAATCTTTTGGTGCTAGTTCTTTTAGTACTTTCAATGCATCTTCTTTGTTTCCGGTGTTAATTGCCTGAGCGTATGCATCGTTTGCCGTCTGTTGACCCCCACGAGCAGATCGTCCGTCGATCTGGAAAACACCCCATTCTAGCACGTCTCCGTCTTTGTCGATATATGCCTTGACGTCGGACGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGAGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAATTGAATGAGAACATGGATATGCGGAGACCCATCCTCGTGACTCTCTCTACAGATTTTGATGAATTTCTTGCAAGTAGGGGTTTCTAGGTTTATTAATTGGGAAAGTGCCTCTTCCTTTGTAAGAGAGCATTTTGGGTAAGTGAGGAAATAGTTTTTGGCATTAATTCTAAAACGACTTGGCGGAGCCATATAAAATGTCGTTTCGATCCGGTGTCTCTCAACTTTCTCTATGTAATTGGTGTCTGGAGTCCCATATATAGTTAGGACACCATATGGCACTATTGTAATTTCTGAAAGTAAATTACTTTAATTCAAATTGCGTAAAGCGGCCATTCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_010084316.1
|
|
Location
|
118-447 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAG |
|
Protein Sequence
|
MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVVRAKNYVEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGVDKQADEQKAQNV |
|
NCBI Accession
|
YP_010084317.1
|
|
Location
|
278-1048 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_010084318.1
|
|
Location
|
308-793 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 |
|
Coding Region
|
ATGCATGTTCTTCACCGTTGCGGTGCTCGGTTCATTGTCAAACATGTTGAACACTTCACCAAAATCCTGTGGCGATCCCGTAGGACGACGGTCACGAACCAAGAAAAACATCACACTGTTCGTGTGGTTTTTAGTCTTTATGTTTTCATCCATCCATATCTTCCCCAATACATACACAGATTTCACACAGAAACGCTTCCCCACGCGATGAGTCAGTCCGGTTCCTCGGGTAACGTCACTGACACACATGACTTTGCCAATATGAGACACATCGTGCCTAGATTCAAAAGACTGCACCTTACAAGGACCTTCACATCCCCTTGGCACGTCGGGGCTTCTGTACATTCTATACATTCTGGGCTTTCTGTTCATCGGCCTGTTTGTCCACGCCTTTGCTTTTGTGACGCGGGCAATGGGGACAACTGCACGAGCTCCATAAGGGCTGTCGAAGTTGAGACGTCGGCGTACCTTCGATGCGGGAGTTGA |
|
Protein Sequence
|
MHVLHRCGARFIVKHVEHFTKILWRSRRTTVTNQEKHHTVRVVFSLYVFIHPYLPQYIHRFHTETLPHAMSQSGSSGNVTDTHDFANMRHIVPRFKRLHLTRTFTSPWHVGASVHSIHSGLSVHRPVCPRLCFCDAGNGDNCTSSIRAVEVETSAYLRCGS |
|
NCBI Accession
|
YP_010084319.1
|
|
Location
|
1045-1455 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAAGACACAGGTCCTTAAATACCTCCATGAGCTTGGTGTAATAGGAATTTCGAATGTAATAAGAGCAGCCTATCATGTATTGGATAATGTTTTAGAAAAGACTATTGATGTATTGCCATCATGTGATGTAAGGATTAATATATATTAA |
|
Protein Sequence
|
MITDSRTGEYITADRVESGVFIWDVPNPLYFKILKHDSRPCLTNHDIIHLQIQFNHNLRKALGLHKCFLIFQIWTGLRPPTGIFLRVFKTQVLKYLHELGVIGISNVIRAAYHVLDNVLEKTIDVLPSCDVRINIY |
|
NCBI Accession
|
YP_010084320.1
|
|
Location
|
1190-1594 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGATCTGCAGTGTGGTTGTTCGTACTACATATCAATCAACTGTCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAA |
|
Protein Sequence
|
MQSSSHSKNHSIPVAKTSVPQKKKKNIRRRRVDLQCGCSYYISINCHDHGFTHRGVHHCGSSREWRVYLGRSKSPVFQNIETRQQTMPHESRHHPPPNTVQPQPAESSGASQVFSNFPNLDGLTPSDWDFLEGI |
|
NCBI Accession
|
YP_010084321.1
|
|
Location
|
1497-2582 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication initiator protein |
|
Coding Region
|
ATGGCTCCGCCAAGTCGTTTTAGAATTAATGCCAAAAACTATTTCCTCACTTACCCAAAATGCTCTCTTACAAAGGAAGAGGCACTTTCCCAATTAATAAACCTAGAAACCCCTACTTGCAAGAAATTCATCAAAATCTGTAGAGAGAGTCACGAGGATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAGAATGGGGTGTTTTCCAGATCGACGGACGATCTGCTCGTGGGGGTCAACAGACGGCAAACGATGCATACGCTCAGGCAATTAACACCGGAAACAAAGAAGATGCATTGAAAGTACTAAAAGAACTAGCACCAAAAGATTATGTTCTGCAGTTCCATAATTTAATGACGAATTTAGATCGCATTTTTCAACCACGTTCTGAGGTCTATGTATCTCCATTCTCAACTACTTCCTTCGACACAGTTCCTCCAGAACTCGTCGATTGGGTTCAGTCCAATGTATTGTCTGCCGCTGCGCGGCCTTTTAGACCAATAAGCGTAGTAATAGAGGGGGATAGTAGAACGGGAAAGACAATGTGGGCACGTTCACTAGGACCCCACAATTACTTGTGTGGTCATCTGGATCTCAGCCCGAAAGTGTACAATAATGAAGCGTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAATACGAAGTACGGAAAGCCGGTCATGATTAAAGGCGGTATTCCCACCATCTTCCTCTGCAATAAAGGACCAAACAGCAGCTATAAGGAATATCTCGACGAAGAAAAAAATGCATCACTGAAACAGTGGGCTATCAAGAATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGA |
|
Protein Sequence
|
MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLINLETPTCKKFIKICRESHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFHNLMTNLDRIFQPRSEVYVSPFSTTSFDTVPPELVDWVQSNVLSAAARPFRPISVVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNASLKQWAIKNAVFVTLQEPLYSGRENISPPEEEEEHTQEAS |
|
NCBI Accession
|
YP_010084322.1
|
|
Location
|
2249-2425 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAG |
|
Protein Sequence
|
MGLRISMFSFNSKGNTSARITDSSTWYPQLGQHISIRTFRELNRRPTSRHISTKTETC |