Tomato leaf curl New Delhi virus 4
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002824185.1 |
| Isolate |
India: Gujarat, Junagad |
| Release date |
2018/8/25 |
| Submitter |
Swarnalatha,P., Manasa,M., Venkataravanappa,V., Jalali,S., KrishnaReddy,M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGAATGGCCGTGCTAATTTTTAGATGGGCCCTCATCCAATGAAATTCATGCTCCATGGCCTATTTAGTGCGTGGGGACCAATAAAGAGACCAGCTCACCAAGGTAGGATCCACAAACATGCGGGATCCATTATTGCTCGCCTTTCCAGAAAGAGTCCATGGTGTAAGGAGCATGTTAGTTGAAAAACCTCTCCAAGAGATGGAAGACCATTATTCACCAGACACAGTAGGCTACGATTTTATCCGAGATCTCATTCTTGTTCTTCGAGCAAAAAACTATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAGAAGTCCAGACGTGCCAAGGGGCCGTGAAGGCCAGAGGAAATTGCACTCGATTGAATCCAGGCTTGATGTATATCGGACTGGCAAAATCAAGGGTGTTATTCATGTTACCCGAGAAATCGGACTCACACATAGCGTAGGGAAGCGATTTGGGGTGAATTCGGTTTATGTGCTGGAAAAGAGAGGGATCGATGAAACCATCAAGCCAAAAAGCCATACTTACCGGGTAATGTTTTTTTTGGTTCGTGACCGTCGTCCTACAGGAACTCCCCAGGATTTCGGGGACGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCAACTGTGACCGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGCAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGCACTCATGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCAAGCTTTATATCATATGTAGTCCATACATCAATTGTTCGCTCCATTACATTATCCAAAACATGATAAACTGCTCTTATTACATTATTAATTCCTATTACACCTAACATATCCAGGTACTTAAGGACCTGGGTTTTGAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAATTGTATTTGAATCTTGATTATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCTGATTTCCCAGGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGGTCATGGCAGGTTAATGCTATGAAGTAAGAACAGCCACACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCTTGTGCTGTACTTTGATTGGTACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGGTCGCATTTTTTAAAGCCCAGGTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAAGTAGTGGGATTCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCTTCATTACTGTACACCTTTGGCCTAAGGTCAAAATGACCACACAAATAATTATGTGGACCTAAGCAACGAGCCCACATTGTTTTGCCAGTTCTACTATCCCCCTCTATGACTATGCTTATGGGCCTAAAAGGCCGCGCAGCGGCACACACAACATTTGACGTAACCCAATCGACGAGGTCTGCCGGAACTCTGTCGAAGGATGAAATTGAAAATGGAGAAACATAAACCTCAGAAGGAGGTTGAAAAATGCGATCTAAATTGGTATTTAAATTGTGAAATTGTAAAACGAAATATGTAGGAGATTTCTCCCTTAATATATTGAGGGCCTGAGATTTGGACCCTGAATTAATTGCCTCGGCATATGGGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACACCCCATTCTAGAACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTCCGGATGGAAATGTGCTGACCGACTTGGGGAAACCAATTCCAAGCATCTGTTATTCTTGCAGTGGAATTTCCCTTCGAATTGGATGACAACCTGGATATGCCGAAACCCATCTACATGAAGCTCTCTACAGATCGAGAGGAATTTCTTCTGCCCCTGGGTTTCCCTGGTTTGCAATTGACAAAGTGCCTCTCCTTTAGTTAGAGAGCACTTTGGATCTGTGAGGAAATACTTTTTGGCATTTTCCCTAACACGACCTGGCGAAACCATTGCACTCGCCCCTTTGATTCTGCCTCCCTCAACATATCTATATACCTGGTGTCTGGACTCCTATATATTGGTAACACACCATATGGCCTTATTGTAATTTTGAACAGAAAATTACTTTGATTCTCATTCCCTAATCCGGCCATTCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009506532.1
|
|
Location
|
120-458 |
|
Protein Name
|
AV2 |
|
Coding Region
|
ATGCGGGATCCATTATTGCTCGCCTTTCCAGAAAGAGTCCATGGTGTAAGGAGCATGTTAGTTGAAAAACCTCTCCAAGAGATGGAAGACCATTATTCACCAGACACAGTAGGCTACGATTTTATCCGAGATCTCATTCTTGTTCTTCGAGCAAAAAACTATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAG |
|
Protein Sequence
|
MRDPLLLAFPERVHGVRSMLVEKPLQEMEDHYSPDTVGYDFIRDLILVLRAKNYEEPTSRYHHIKAPIEGIQICQVRQPQRSECSGPHCPRHRSKGLDQQAYEQKTQNIQNA |
|
NCBI Accession
|
YP_009506533.1
|
|
Location
|
280-1050 |
|
Protein Name
|
AV1 |
|
Coding Region
|
ATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAGAAGTCCAGACGTGCCAAGGGGCCGTGAAGGCCAGAGGAAATTGCACTCGATTGAATCCAGGCTTGATGTATATCGGACTGGCAAAATCAAGGGTGTTATTCATGTTACCCGAGAAATCGGACTCACACATAGCGTAGGGAAGCGATTTGGGGTGAATTCGGTTTATGTGCTGGAAAAGAGAGGGATCGATGAAACCATCAAGCCAAAAAGCCATACTTACCGGGTAATGTTTTTTTTGGTTCGTGACCGTCGTCCTACAGGAACTCCCCAGGATTTCGGGGACGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCAACTGTGACCGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGCAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGCACTCATGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA |
|
Protein Sequence
|
MKNRPADIIISKPPSKVYRYVKFDSPKGASAVVPIARVTEAKAWTNRPMNRKPRIYRTHRSPDVPRGREGQRKLHSIESRLDVYRTGKIKGVIHVTREIGLTHSVGKRFGVNSVYVLEKRGIDETIKPKSHTYRVMFFLVRDRRPTGTPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_009506534.1
|
|
Location
|
310-795 |
|
Protein Name
|
AC5 |
|
Coding Region
|
ATGCATGTTCTTCACCGTTGCTGTGCTCGGTTCATTGTCAAACATATTAAACACGTCCCCGAAATCCTGGGGAGTTCCTGTAGGACGACGGTCACGAACCAAAAAAAACATTACCCGGTAAGTATGGCTTTTTGGCTTGATGGTTTCATCGATCCCTCTCTTTTCCAGCACATAAACCGAATTCACCCCAAATCGCTTCCCTACGCTATGTGTGAGTCCGATTTCTCGGGTAACATGAATAACACCCTTGATTTTGCCAGTCCGATATACATCAAGCCTGGATTCAATCGAGTGCAATTTCCTCTGGCCTTCACGGCCCCTTGGCACGTCTGGACTTCTATGCGTTCTGTATATTCTGGGTTTTCTGTTCATAGGCCTGTTGGTCCAGGCCTTTGCTTCTGTGACGCGGGCAATGGGGACCACTGCACTCGCTCCTTTGGGGCTGTCGAACTTGACATATCTGTATACCTTCGATGGGGGCTTTGA |
|
Protein Sequence
|
MHVLHRCCARFIVKHIKHVPEILGSSCRTTVTNQKKHYPVSMAFWLDGFIDPSLFQHINRIHPKSLPYAMCESDFSGNMNNTLDFASPIYIKPGFNRVQFPLAFTAPWHVWTSMRSVYSGFSVHRPVGPGLCFCDAGNGDHCTRSFGAVELDISVYLRWGL |
|
NCBI Accession
|
YP_009506535.1
|
|
Location
|
1047-1457 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGACCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATCAGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAATTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTAATAGGAATTAATAATGTAATAAGAGCAGTTTATCATGTTTTGGATAATGTAATGGAGCGAACAATTGATGTATGGACTACATATGATATAAAGCTTGATATTTATTAA |
|
Protein Sequence
|
MTTDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGINNVIRAVYHVLDNVMERTIDVWTTYDIKLDIY |
|
NCBI Accession
|
YP_009506536.1
|
|
Location
|
1177-1596 |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGCGACCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAAGTACAGCACAAGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGTGGCTGTTCTTACTTCATAGCATTAACCTGCCATGACCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATCAGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAATTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAA |
|
Protein Sequence
|
MRPSSPSKAHSTQVPIKVQHKLAKKGTRRRRVDLPCGCSYFIALTCHDHGFTHRGVHHCGSYREWRIYLGNQKSPVFQNFETRQQALPNTARHNQDSNTIQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP |
|
NCBI Accession
|
YP_009506537.1
|
|
Location
|
1499-2584 |
|
Protein Name
|
AC1 |
|
Coding Region
|
ATGGTTTCGCCAGGTCGTGTTAGGGAAAATGCCAAAAAGTATTTCCTCACAGATCCAAAGTGCTCTCTAACTAAAGGAGAGGCACTTTGTCAATTGCAAACCAGGGAAACCCAGGGGCAGAAGAAATTCCTCTCGATCTGTAGAGAGCTTCATGTAGATGGGTTTCGGCATATCCAGGTTGTCATCCAATTCGAAGGGAAATTCCACTGCAAGAATAACAGATGCTTGGAATTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGGACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTTCTAGAATGGGGTGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACCCATATGCCGAGGCAATTAATTCAGGGTCCAAATCTCAGGCCCTCAATATATTAAGGGAGAAATCTCCTACATATTTCGTTTTACAATTTCACAATTTAAATACCAATTTAGATCGCATTTTTCAACCTCCTTCTGAGGTTTATGTTTCTCCATTTTCAATTTCATCCTTCGACAGAGTTCCGGCAGACCTCGTCGATTGGGTTACGTCAAATGTTGTGTGTGCCGCTGCGCGGCCTTTTAGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGAACTGGCAAAACAATGTGGGCTCGTTGCTTAGGTCCACATAATTATTTGTGTGGTCATTTTGACCTTAGGCCAAAGGTGTACAGTAATGAAGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAAATCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGAATCCCACTACTTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATACTTGGATGAGGAAAAGAATTCTGCACTAAAAACCTGGGCTTTAAAAAATGCGACCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAAGTACAGCACAAGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA |
|
Protein Sequence
|
MVSPGRVRENAKKYFLTDPKCSLTKGEALCQLQTRETQGQKKFLSICRELHVDGFRHIQVVIQFEGKFHCKNNRCLELVSPSRSAHFHPDIQGAKSSSDVKSYMEKDGDVLEWGVFQVDGRSARGGCQSANDPYAEAINSGSKSQALNILREKSPTYFVLQFHNLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVTSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHFDLRPKVYSNEAWYNVIDDVDPHYLKHFKEIMGAQRDWQSNTKYGKPVQIKGGNPTTFLCNPGPNSSYKEYLDEEKNSALKTWALKNATFVTLEGPLYSGTNQSTAQASQEGDQTSTS |
|
NCBI Accession
|
YP_009506538.1
|
|
Location
|
2251-2427 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGTTTCGGCATATCCAGGTTGTCATCCAATTCGAAGGGAAATTCCACTGCAAGAATAACAGATGCTTGGAATTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGGACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTTCTAG |
|
Protein Sequence
|
MGFGISRLSSNSKGNSTARITDAWNWFPQVGQHISIRTFRELRAQAMSNPTWKKTETF |