Tomato leaf curl New Delhi virus 4

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824185.1
Isolate India: Gujarat, Junagad
Release date 2018/8/25
Submitter Swarnalatha,P., Manasa,M., Venkataravanappa,V., Jalali,S., KrishnaReddy,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038471
ACCGAATGGCCGTGCTAATTTTTAGATGGGCCCTCATCCAATGAAATTCATGCTCCATGGCCTATTTAGTGCGTGGGGACCAATAAAGAGACCAGCTCACCAAGGTAGGATCCACAAACATGCGGGATCCATTATTGCTCGCCTTTCCAGAAAGAGTCCATGGTGTAAGGAGCATGTTAGTTGAAAAACCTCTCCAAGAGATGGAAGACCATTATTCACCAGACACAGTAGGCTACGATTTTATCCGAGATCTCATTCTTGTTCTTCGAGCAAAAAACTATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAGAAGTCCAGACGTGCCAAGGGGCCGTGAAGGCCAGAGGAAATTGCACTCGATTGAATCCAGGCTTGATGTATATCGGACTGGCAAAATCAAGGGTGTTATTCATGTTACCCGAGAAATCGGACTCACACATAGCGTAGGGAAGCGATTTGGGGTGAATTCGGTTTATGTGCTGGAAAAGAGAGGGATCGATGAAACCATCAAGCCAAAAAGCCATACTTACCGGGTAATGTTTTTTTTGGTTCGTGACCGTCGTCCTACAGGAACTCCCCAGGATTTCGGGGACGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCAACTGTGACCGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGCAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGCACTCATGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCAAGCTTTATATCATATGTAGTCCATACATCAATTGTTCGCTCCATTACATTATCCAAAACATGATAAACTGCTCTTATTACATTATTAATTCCTATTACACCTAACATATCCAGGTACTTAAGGACCTGGGTTTTGAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAATTGTATTTGAATCTTGATTATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCTGATTTCCCAGGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGGTCATGGCAGGTTAATGCTATGAAGTAAGAACAGCCACACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCTTGTGCTGTACTTTGATTGGTACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGGTCGCATTTTTTAAAGCCCAGGTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAAGTAGTGGGATTCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCTTCATTACTGTACACCTTTGGCCTAAGGTCAAAATGACCACACAAATAATTATGTGGACCTAAGCAACGAGCCCACATTGTTTTGCCAGTTCTACTATCCCCCTCTATGACTATGCTTATGGGCCTAAAAGGCCGCGCAGCGGCACACACAACATTTGACGTAACCCAATCGACGAGGTCTGCCGGAACTCTGTCGAAGGATGAAATTGAAAATGGAGAAACATAAACCTCAGAAGGAGGTTGAAAAATGCGATCTAAATTGGTATTTAAATTGTGAAATTGTAAAACGAAATATGTAGGAGATTTCTCCCTTAATATATTGAGGGCCTGAGATTTGGACCCTGAATTAATTGCCTCGGCATATGGGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACACCCCATTCTAGAACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTCCGGATGGAAATGTGCTGACCGACTTGGGGAAACCAATTCCAAGCATCTGTTATTCTTGCAGTGGAATTTCCCTTCGAATTGGATGACAACCTGGATATGCCGAAACCCATCTACATGAAGCTCTCTACAGATCGAGAGGAATTTCTTCTGCCCCTGGGTTTCCCTGGTTTGCAATTGACAAAGTGCCTCTCCTTTAGTTAGAGAGCACTTTGGATCTGTGAGGAAATACTTTTTGGCATTTTCCCTAACACGACCTGGCGAAACCATTGCACTCGCCCCTTTGATTCTGCCTCCCTCAACATATCTATATACCTGGTGTCTGGACTCCTATATATTGGTAACACACCATATGGCCTTATTGTAATTTTGAACAGAAAATTACTTTGATTCTCATTCCCTAATCCGGCCATTCGTATAATATT

Gene Information

NCBI Accession YP_009506532.1
Location 120-458
Protein Name AV2
Coding Region ATGCGGGATCCATTATTGCTCGCCTTTCCAGAAAGAGTCCATGGTGTAAGGAGCATGTTAGTTGAAAAACCTCTCCAAGAGATGGAAGACCATTATTCACCAGACACAGTAGGCTACGATTTTATCCGAGATCTCATTCTTGTTCTTCGAGCAAAAAACTATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAG
Protein Sequence MRDPLLLAFPERVHGVRSMLVEKPLQEMEDHYSPDTVGYDFIRDLILVLRAKNYEEPTSRYHHIKAPIEGIQICQVRQPQRSECSGPHCPRHRSKGLDQQAYEQKTQNIQNA

NCBI Accession YP_009506533.1
Location 280-1050
Protein Name AV1
Coding Region ATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAGAAGTCCAGACGTGCCAAGGGGCCGTGAAGGCCAGAGGAAATTGCACTCGATTGAATCCAGGCTTGATGTATATCGGACTGGCAAAATCAAGGGTGTTATTCATGTTACCCGAGAAATCGGACTCACACATAGCGTAGGGAAGCGATTTGGGGTGAATTCGGTTTATGTGCTGGAAAAGAGAGGGATCGATGAAACCATCAAGCCAAAAAGCCATACTTACCGGGTAATGTTTTTTTTGGTTCGTGACCGTCGTCCTACAGGAACTCCCCAGGATTTCGGGGACGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCAACTGTGACCGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGCAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGCACTCATGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA
Protein Sequence MKNRPADIIISKPPSKVYRYVKFDSPKGASAVVPIARVTEAKAWTNRPMNRKPRIYRTHRSPDVPRGREGQRKLHSIESRLDVYRTGKIKGVIHVTREIGLTHSVGKRFGVNSVYVLEKRGIDETIKPKSHTYRVMFFLVRDRRPTGTPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009506534.1
Location 310-795
Protein Name AC5
Coding Region ATGCATGTTCTTCACCGTTGCTGTGCTCGGTTCATTGTCAAACATATTAAACACGTCCCCGAAATCCTGGGGAGTTCCTGTAGGACGACGGTCACGAACCAAAAAAAACATTACCCGGTAAGTATGGCTTTTTGGCTTGATGGTTTCATCGATCCCTCTCTTTTCCAGCACATAAACCGAATTCACCCCAAATCGCTTCCCTACGCTATGTGTGAGTCCGATTTCTCGGGTAACATGAATAACACCCTTGATTTTGCCAGTCCGATATACATCAAGCCTGGATTCAATCGAGTGCAATTTCCTCTGGCCTTCACGGCCCCTTGGCACGTCTGGACTTCTATGCGTTCTGTATATTCTGGGTTTTCTGTTCATAGGCCTGTTGGTCCAGGCCTTTGCTTCTGTGACGCGGGCAATGGGGACCACTGCACTCGCTCCTTTGGGGCTGTCGAACTTGACATATCTGTATACCTTCGATGGGGGCTTTGA
Protein Sequence MHVLHRCCARFIVKHIKHVPEILGSSCRTTVTNQKKHYPVSMAFWLDGFIDPSLFQHINRIHPKSLPYAMCESDFSGNMNNTLDFASPIYIKPGFNRVQFPLAFTAPWHVWTSMRSVYSGFSVHRPVGPGLCFCDAGNGDHCTRSFGAVELDISVYLRWGL

NCBI Accession YP_009506535.1
Location 1047-1457
Protein Name AC3
Coding Region ATGACCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATCAGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAATTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTAATAGGAATTAATAATGTAATAAGAGCAGTTTATCATGTTTTGGATAATGTAATGGAGCGAACAATTGATGTATGGACTACATATGATATAAAGCTTGATATTTATTAA
Protein Sequence MTTDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGINNVIRAVYHVLDNVMERTIDVWTTYDIKLDIY

NCBI Accession YP_009506536.1
Location 1177-1596
Protein Name AC2
Coding Region ATGCGACCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAAGTACAGCACAAGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGTGGCTGTTCTTACTTCATAGCATTAACCTGCCATGACCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATCAGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAATTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAA
Protein Sequence MRPSSPSKAHSTQVPIKVQHKLAKKGTRRRRVDLPCGCSYFIALTCHDHGFTHRGVHHCGSYREWRIYLGNQKSPVFQNFETRQQALPNTARHNQDSNTIQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP

NCBI Accession YP_009506537.1
Location 1499-2584
Protein Name AC1
Coding Region ATGGTTTCGCCAGGTCGTGTTAGGGAAAATGCCAAAAAGTATTTCCTCACAGATCCAAAGTGCTCTCTAACTAAAGGAGAGGCACTTTGTCAATTGCAAACCAGGGAAACCCAGGGGCAGAAGAAATTCCTCTCGATCTGTAGAGAGCTTCATGTAGATGGGTTTCGGCATATCCAGGTTGTCATCCAATTCGAAGGGAAATTCCACTGCAAGAATAACAGATGCTTGGAATTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGGACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTTCTAGAATGGGGTGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACCCATATGCCGAGGCAATTAATTCAGGGTCCAAATCTCAGGCCCTCAATATATTAAGGGAGAAATCTCCTACATATTTCGTTTTACAATTTCACAATTTAAATACCAATTTAGATCGCATTTTTCAACCTCCTTCTGAGGTTTATGTTTCTCCATTTTCAATTTCATCCTTCGACAGAGTTCCGGCAGACCTCGTCGATTGGGTTACGTCAAATGTTGTGTGTGCCGCTGCGCGGCCTTTTAGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGAACTGGCAAAACAATGTGGGCTCGTTGCTTAGGTCCACATAATTATTTGTGTGGTCATTTTGACCTTAGGCCAAAGGTGTACAGTAATGAAGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAAATCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGAATCCCACTACTTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATACTTGGATGAGGAAAAGAATTCTGCACTAAAAACCTGGGCTTTAAAAAATGCGACCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAAGTACAGCACAAGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA
Protein Sequence MVSPGRVRENAKKYFLTDPKCSLTKGEALCQLQTRETQGQKKFLSICRELHVDGFRHIQVVIQFEGKFHCKNNRCLELVSPSRSAHFHPDIQGAKSSSDVKSYMEKDGDVLEWGVFQVDGRSARGGCQSANDPYAEAINSGSKSQALNILREKSPTYFVLQFHNLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVTSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHFDLRPKVYSNEAWYNVIDDVDPHYLKHFKEIMGAQRDWQSNTKYGKPVQIKGGNPTTFLCNPGPNSSYKEYLDEEKNSALKTWALKNATFVTLEGPLYSGTNQSTAQASQEGDQTSTS

NCBI Accession YP_009506538.1
Location 2251-2427
Protein Name AC4
Coding Region ATGGGTTTCGGCATATCCAGGTTGTCATCCAATTCGAAGGGAAATTCCACTGCAAGAATAACAGATGCTTGGAATTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGGACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTTCTAG
Protein Sequence MGFGISRLSSNSKGNSTARITDAWNWFPQVGQHISIRTFRELRAQAMSNPTWKKTETF

References More References in PubMed

1

Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production.

Cai L, et al.  aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep.

PMID: 37970471
2

Tomato Leaf Curl New Delhi Virus Spain Strain Is Not Transmitted by Trialeurodes vaporariorum and Is Inefficiently Transmitted by Bemisia tabaci Mediterranean between Zucchini and the Wild Cucurbit Ecballium elaterium.

Farina A, et al.  Insects. 2023 Apr 15;14(4):384. doi: 10.3390/insects14040384.

PMID: 37103199
3

Molecular characterization and infectivity analysis of tomato leaf curl New Delhi virus isolates infecting potato.

Jeevalatha A, et al.  3 Biotech. 2021 Apr;11(4):203. doi: 10.1007/s13205-021-02752-5. Epub 2021 Mar 30.

PMID: 33927993
4

FKBP-type peptidyl-prolyl cis-trans isomerase interacts with the movement protein of tomato leaf curl New Delhi virus and impacts viral replication in Nicotiana benthamiana.

Chang HH, et al.  Mol Plant Pathol. 2022 Apr;23(4):561-575. doi: 10.1111/mpp.13181. Epub 2022 Jan 4.

PMID: 34984809
5

Tomato cultivar tolerant to Tomato leaf curl New Delhi virus infection induces virus-specific short interfering RNA accumulation and defence-associated host gene expression.

Sahu PP, et al.  Mol Plant Pathol. 2010 Jul;11(4):531-44. doi: 10.1111/j.1364-3703.2010.00630.x.

PMID: 20618710
6

Molecular evidence for the occurrence of tomato leaf curl New Delhi virus on chayote (Sechium edule) in southern India.

Nagendran K, et al.  Virusdisease. 2017 Dec;28(4):425-429. doi: 10.1007/s13337-017-0403-7. Epub 2017 Oct 9.

PMID: 29291235
7

Tomato leaf curl New Delhi virus DNA A component and Cotton leaf curl Multan betasatellite can cause mild transient symptoms in cotton.

Saeed M.  Acta Virol. 2010;54(4):317-8. doi: 10.4149/av_2010_04_317.

PMID: 21175259
8

Scanometric Detection of Tomato Leaf Curl New Delhi Viral DNA Using Mono- and Bifunctional AuNP-Conjugated Oligonucleotide Probes.

Dharanivasan G, et al.  ACS Omega. 2019 Jun 11;4(6):10094-10107. doi: 10.1021/acsomega.9b00340. eCollection 2019 Jun 30.

PMID: 31460102
9

Disruption of tomato TGS machinery by ToLCNDV causes reprogramming of vascular tissue-specific TORNADO1 gene expression.

Chowdhury S, et al.  Planta. 2022 Sep 12;256(4):78. doi: 10.1007/s00425-022-03985-1.

PMID: 36094622
10

Tomato auxin biosynthesis/signaling is reprogrammed by the geminivirus to enhance its pathogenicity.

Vinutha T, et al.  Planta. 2020 Sep 17;252(4):51. doi: 10.1007/s00425-020-03452-9.

PMID: 32940767