Tomato leaf curl New Delhi virus 2


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824165.1
Isolate India
Release date 2018/8/25
Submitter Chaudhary,A., Kumar,R., Mukherjee,S.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038470
ACCGGATGGCCGCGCGTTTTTTTGTGGCCCCTCGACCAATCACATCTCGCGCTCAAAGCTTAAATAACTCTCCCGCCTGTTATAAATACTTACGCTCTAAGTATCCGCTTGCAAAATGTGGGATCCACTGGTTAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTGCCATCAAATATCTTCAGCTACTCTCTCAGGAATACTCTCCCGATACGGTAGGTTACGATCTAATACGCGATTTGATCTGTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACGCGACCCGTGTGGCTGTCCCCACTGTCCGCGTCACAAAATCGCGAATGTGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATTTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGCTGTGAGGGTCCATGTAAGGTACAGTCTTTCGAGTCCAGACACGATGTAGTGCATATAGGTAAGGTAATGTGCATCAGTGATGTCACCCGCGGTACTGGGCTGACCCATCGAGTAGGGAAGCGTTTCTGCGTGAAATCTGTTTATGTTTTGGGTAAGATATGGATGGATGAAAACATCAAGTCCAAAAATCATACTAACAATGTCATGTTCTTTCTCGCCCGTGATCGACGGCCCACTGACAAGCCTCAGGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATCGAGACCGCTACCAGGTATTGCGTAAGTGGTATGCAACCGTCACGGGTGGACAGTATGGTGCAAAGGAACAGGCCCTTGTCAAGAAGTTTGTTAGGGTTAACAATTATGTAGTTTATAACCAGCAGGAGGCTGGTAAATATGAGAATCACACCGAGAATGCTCTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCCGTGTACGCGACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGAAATTAATAAATGTTTAATTTTTATTTCTGATCAGGTCTACATACATAGTTTGCTCTAATTTATTCCATAATACATGATTTACAGCCCTAATAATTGCATTAATTGATATTACACCGATATTGTTGAGATACTTGAGGACTTGGGTCTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGTCGTCCAGATTCGGTAGGTCAGAAAACATTTGTGCACTCCCAGAGCTCTCCGGAGGTTGTAGTTGAATTGGATCCTGATCGTGAGTATGTCCATGTTCGTCGTGAATGGACGGACGTCGTGGCTGAGGAGCTTGAAATAGAGGGGATTTGGAATCTCCCAGATATAGGCGCCATTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGTTGATGGACAGATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCGGTTGCGCCTCTTCGCTTCCCTGTGCTGTACTTTGATTGGAACCTGAGTACAGTGGTCCTTCGAGGGTGACGAAGATCGCATTTTTGACGGCCCAGTTCTTTAATGCGGTGTTCTTTTCCTCGTCGAGGAATTCCTTATAACTGCTGTTGGGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAGTGCGGGTCAACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTATACTTTGGGACTTAGGTCCAGGTGTCCACACAAATAGTTGTGTGGTCCCAGTGACCTAGCCCACATCGTCTTCCCCGTTCGACTGTCTCCCTCAATTACTATACTCTGAGGTCTAAGGGGCCGCGCAGCGGGATCGACAACGTTCTCGGACGCCCAATCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGATGAAGAAAAAGGAGAAATATAGGGAGCCGGTGGCTCCTGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCCTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTCTCATGTAATTCTCGGCAGATTTTAATATATTTTTTTGAAGTTGGGGTTTGGAAATTCTGGATTTGGGAAAGTGCTTCCTCTTTGGTTAGTGAGCACTTAGGATAAGTGAGGAAATAATTTTTGGAGTTTATAACGAAGCGCTTTGGAGGCATGTTGACCAAAGTTGAGACCCAATTGACCGCTCTCGCAACTTATCCCTGGTATATCGGGTCTCAATATATAGTGAGACCCAAATGGCACAATTGTAATTTCTCCAATAAATTCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506526.1
Location 116-463
Gene Name AV2
Protein Name AV2
Coding Region ATGTGGGATCCACTGGTTAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTGCCATCAAATATCTTCAGCTACTCTCTCAGGAATACTCTCCCGATACGGTAGGTTACGATCTAATACGCGATTTGATCTGTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACGCGACCCGTGTGGCTGTCCCCACTGTCCGCGTCACAAAATCGCGAATGTGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATTTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAIKYLQLLSQEYSPDTVGYDLIRDLICILRSRNYVEASCRYRHFYPRVEGASASELRQPVRDPCGCPHCPRHKIANVGEQAHESEAQNLQDVQKP

NCBI Accession YP_009506527.1
Location 276-1046
Gene Name AV1
Protein Name AV1
Coding Region ATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACGCGACCCGTGTGGCTGTCCCCACTGTCCGCGTCACAAAATCGCGAATGTGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATTTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGCTGTGAGGGTCCATGTAAGGTACAGTCTTTCGAGTCCAGACACGATGTAGTGCATATAGGTAAGGTAATGTGCATCAGTGATGTCACCCGCGGTACTGGGCTGACCCATCGAGTAGGGAAGCGTTTCTGCGTGAAATCTGTTTATGTTTTGGGTAAGATATGGATGGATGAAAACATCAAGTCCAAAAATCATACTAACAATGTCATGTTCTTTCTCGCCCGTGATCGACGGCCCACTGACAAGCCTCAGGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATCGAGACCGCTACCAGGTATTGCGTAAGTGGTATGCAACCGTCACGGGTGGACAGTATGGTGCAAAGGAACAGGCCCTTGTCAAGAAGTTTGTTAGGGTTAACAATTATGTAGTTTATAACCAGCAGGAGGCTGGTAAATATGAGAATCACACCGAGAATGCTCTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCCGTGTACGCGACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYATRVAVPTVRVTKSRMWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLARDRRPTDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009506528.1
Location 1060-1452
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGATTCCAAATCCCCTCTATTTCAAGCTCCTCAGCCACGACGTCCGTCCATTCACGACGAACATGGACATACTCACGATCAGGATCCAATTCAACTACAACCTCCGGAGAGCTCTGGGAGTGCACAAATGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCCTCAAGTATCTCAACAATATCGGTGTAATATCAATTAATGCAATTATTAGGGCTGTAAATCATGTATTATGGAATAAATTAGAGCAAACTATGTATGTAGACCTGATCAGAAATAAAAATTAA
Protein Sequence MDSRTGEPITAAQAWNGAYIWEIPNPLYFKLLSHDVRPFTTNMDILTIRIQFNYNLRRALGVHKCFLTYRIWTTLHPPTGLFLRVFKTQVLKYLNNIGVISINAIIRAVNHVLWNKLEQTMYVDLIRNKN

NCBI Accession YP_009506529.1
Location 1145-1597
Gene Name AC2
Protein Name AC2
Coding Region ATGCGATCTTCGTCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAGGCGCAACCGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATCTGTCCATCAACTGCCACAATCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGATTCCAAATCCCCTCTATTTCAAGCTCCTCAGCCACGACGTCCGTCCATTCACGACGAACATGGACATACTCACGATCAGGATCCAATTCAACTACAACCTCCGGAGAGCTCTGGGAGTGCACAAATGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCCTCAAGTATCTCAACAATATCGGTGTAATATCAATTAA
Protein Sequence MRSSSPSKDHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSINCHNHGFTHRGTHHCSSSMEWRLYLGDSKSPLFQAPQPRRPSIHDEHGHTHDQDPIQLQPPESSGSAQMFSDLPNLDDLTPSDWSFLKGIQDPSPQVSQQYRCNIN

NCBI Accession YP_009506530.1
Location 1494-2582
Gene Name AC1
Protein Name AC1
Coding Region ATGCCTCCAAAGCGCTTCGTTATAAACTCCAAAAATTATTTCCTCACTTATCCTAAGTGCTCACTAACCAAAGAGGAAGCACTTTCCCAAATCCAGAATTTCCAAACCCCAACTTCAAAAAAATATATTAAAATCTGCCGAGAATTACATGAGAATGGGGAACCTCATCTGCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGAATCTTTCAGGAGCCACCGGCTCCCTATATTTCTCCTTTTTCTTCATCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGATTGGGCGTCCGAGAACGTTGTCGATCCCGCTGCGCGGCCCCTTAGACCTCAGAGTATAGTAATTGAGGGAGACAGTCGAACGGGGAAGACGATGTGGGCTAGGTCACTGGGACCACACAACTATTTGTGTGGACACCTGGACCTAAGTCCCAAAGTATACAGTAACGACGCTTGGTATAACGTCATTGATGACGTTGACCCGCACTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAGTCCAACACAAAATACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTGTGCAATCCTGGTCCCAACAGCAGTTATAAGGAATTCCTCGACGAGGAAAAGAACACCGCATTAAAGAACTGGGCCGTCAAAAATGCGATCTTCGTCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAGGCGCAACCGGAGGAGGAGAGTAGATCTTGA
Protein Sequence MPPKRFVINSKNYFLTYPKCSLTKEEALSQIQNFQTPTSKKYIKICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDFVLQFHNLNANLDRIFQEPPAPYISPFSSSSFDQVPEELEDWASENVVDPAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFVTLEGPLYSGSNQSTAQGSEEAQPEEESRS

NCBI Accession YP_009506531.1
Location 2126-2434
Gene Name AC4
Protein Name AC4
Coding Region ATGAGAATGGGGAACCTCATCTGCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAACTAG
Protein Sequence MRMGNLICTCSSSSRGNTSARISDSSTWSPQAGQHISIRTFRELNQAPMSSPTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQHLTQAVSQRLLESLGN

References More References in PubMed

1

Begomovirus Tomato Leaf Curl New Delhi Virus Is Seedborne but Not Seed Transmitted in Melon.

Fortes IM, et al.  Plant Dis. 2023 Feb;107(2):473-479. doi: 10.1094/PDIS-09-21-1930-RE. Epub 2023 Feb 15.

PMID: 35771117

2

Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci.

Janssen D, et al.  Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390.

PMID: 35161372

3

In vivo Antiphytoviral Activity of Essential Oils and Hydrosols From Origanum vulgare, Thymus vulgaris, and Rosmarinus officinalis to Control Zucchini Yellow Mosaic Virus and Tomato Leaf Curl New Delhi Virus in Cucurbita pepo L.

Taglienti A, et al.  Front Microbiol. 2022 Apr 25;13:840893. doi: 10.3389/fmicb.2022.840893. eCollection 2022.

PMID: 35547120

4

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101

5

Resistance Against Melon Chlorotic Mosaic Virus and Tomato Leaf Curl New Delhi Virus in Melon.

Romay G, et al.  Plant Dis. 2019 Nov;103(11):2913-2919. doi: 10.1094/PDIS-02-19-0298-RE. Epub 2019 Aug 20.

PMID: 31436474

6

Molecular characterization of SlATG18f in response to Tomato leaf curl New Delhi virus infection in tomato and development of a CAPS marker for leaf curl disease tolerance.

Prasad A, et al.  Theor Appl Genet. 2021 May;134(5):1463-1474. doi: 10.1007/s00122-021-03783-5. Epub 2021 Feb 7.

PMID: 33554270

7

Sub-cellular localization of suppressor proteins of tomato leaf curl New Delhi virus.

Sarkar M, et al.  Virusdisease. 2021 Jun;32(2):298-304. doi: 10.1007/s13337-021-00651-0. Epub 2021 Apr 10.

PMID: 34350318

8

Association of Tomato Leaf Curl New Delhi Virus, Betasatellite, and Alphasatellite with Mosaic Disease of Spine Gourd (Momordica dioica Roxb. Willd) in India.

Venkataravanappa V, et al.  Iran J Biotechnol. 2019 Jan 11;17(1):e2134. doi: 10.21859/ijb.2134. eCollection 2019 Jan.

PMID: 31457044

9

Grafting to Manage Infections of the Emerging Tomato Leaf Curl New Delhi Virus in Cucurbits.

Mastrochirico M, et al.  Plants (Basel). 2022 Dec 21;12(1):37. doi: 10.3390/plants12010037.

PMID: 36616164

10

Cy-1, a major QTL for tomato leaf curl New Delhi virus resistance, harbors a gene encoding a DFDGD-Class RNA-dependent RNA polymerase in cucumber (Cucumis sativus).

Koeda S, et al.  BMC Plant Biol. 2024 Oct 2;24(1):879. doi: 10.1186/s12870-024-05591-7.

PMID: 39358692