Tomato leaf curl New Delhi virus 2
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_002824165.1 |
| Isolate | India |
| Release date | 2018/8/25 |
| Submitter | Chaudhary,A., Kumar,R., Mukherjee,S.K. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038470
ACCGGATGGCCGCGCGTTTTTTTGTGGCCCCTCGACCAATCACATCTCGCGCTCAAAGCTTAAATAACTCTCCCGCCTGTTATAAATACTTACGCTCTAAGTATCCGCTTGCAAAATGTGGGATCCACTGGTTAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTGCCATCAAATATCTTCAGCTACTCTCTCAGGAATACTCTCCCGATACGGTAGGTTACGATCTAATACGCGATTTGATCTGTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACGCGACCCGTGTGGCTGTCCCCACTGTCCGCGTCACAAAATCGCGAATGTGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATTTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGCTGTGAGGGTCCATGTAAGGTACAGTCTTTCGAGTCCAGACACGATGTAGTGCATATAGGTAAGGTAATGTGCATCAGTGATGTCACCCGCGGTACTGGGCTGACCCATCGAGTAGGGAAGCGTTTCTGCGTGAAATCTGTTTATGTTTTGGGTAAGATATGGATGGATGAAAACATCAAGTCCAAAAATCATACTAACAATGTCATGTTCTTTCTCGCCCGTGATCGACGGCCCACTGACAAGCCTCAGGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATCGAGACCGCTACCAGGTATTGCGTAAGTGGTATGCAACCGTCACGGGTGGACAGTATGGTGCAAAGGAACAGGCCCTTGTCAAGAAGTTTGTTAGGGTTAACAATTATGTAGTTTATAACCAGCAGGAGGCTGGTAAATATGAGAATCACACCGAGAATGCTCTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCCGTGTACGCGACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGAAATTAATAAATGTTTAATTTTTATTTCTGATCAGGTCTACATACATAGTTTGCTCTAATTTATTCCATAATACATGATTTACAGCCCTAATAATTGCATTAATTGATATTACACCGATATTGTTGAGATACTTGAGGACTTGGGTCTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTGTAAGGTCGTCCAGATTCGGTAGGTCAGAAAACATTTGTGCACTCCCAGAGCTCTCCGGAGGTTGTAGTTGAATTGGATCCTGATCGTGAGTATGTCCATGTTCGTCGTGAATGGACGGACGTCGTGGCTGAGGAGCTTGAAATAGAGGGGATTTGGAATCTCCCAGATATAGGCGCCATTCCATGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGATTGTGGCAGTTGATGGACAGATAATAAGAACACCCGCATTCAAGATCTACTCTCCTCCTCCGGTTGCGCCTCTTCGCTTCCCTGTGCTGTACTTTGATTGGAACCTGAGTACAGTGGTCCTTCGAGGGTGACGAAGATCGCATTTTTGACGGCCCAGTTCTTTAATGCGGTGTTCTTTTCCTCGTCGAGGAATTCCTTATAACTGCTGTTGGGACCAGGATTGCACAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGGACTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAGTGCGGGTCAACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTATACTTTGGGACTTAGGTCCAGGTGTCCACACAAATAGTTGTGTGGTCCCAGTGACCTAGCCCACATCGTCTTCCCCGTTCGACTGTCTCCCTCAATTACTATACTCTGAGGTCTAAGGGGCCGCGCAGCGGGATCGACAACGTTCTCGGACGCCCAATCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGATGAAGAAAAAGGAGAAATATAGGGAGCCGGTGGCTCCTGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGCTAGTTCCCTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTCTCATGTAATTCTCGGCAGATTTTAATATATTTTTTTGAAGTTGGGGTTTGGAAATTCTGGATTTGGGAAAGTGCTTCCTCTTTGGTTAGTGAGCACTTAGGATAAGTGAGGAAATAATTTTTGGAGTTTATAACGAAGCGCTTTGGAGGCATGTTGACCAAAGTTGAGACCCAATTGACCGCTCTCGCAACTTATCCCTGGTATATCGGGTCTCAATATATAGTGAGACCCAAATGGCACAATTGTAATTTCTCCAATAAATTCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | YP_009506526.1 |
|---|---|
| Location | 116-463 |
| Gene Name | AV2 |
| Protein Name | AV2 |
| Coding Region | ATGTGGGATCCACTGGTTAACGAGTTCCCCGAGACGGTTCACGGGTTTCGGTGCATGCTTGCCATCAAATATCTTCAGCTACTCTCTCAGGAATACTCTCCCGATACGGTAGGTTACGATCTAATACGCGATTTGATCTGTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACGCGACCCGTGTGGCTGTCCCCACTGTCCGCGTCACAAAATCGCGAATGTGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATTTACAGGATGTACAGAAGCCCTGA |
| Protein Sequence | MWDPLVNEFPETVHGFRCMLAIKYLQLLSQEYSPDTVGYDLIRDLICILRSRNYVEASCRYRHFYPRVEGASASELRQPVRDPCGCPHCPRHKIANVGEQAHESEAQNLQDVQKP |
| NCBI Accession | YP_009506527.1 |
|---|---|
| Location | 276-1046 |
| Gene Name | AV1 |
| Protein Name | AV1 |
| Coding Region | ATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACGCGACCCGTGTGGCTGTCCCCACTGTCCGCGTCACAAAATCGCGAATGTGGGCGAACAGGCCCATGAATCGGAAGCCCAGAATTTACAGGATGTACAGAAGCCCTGATGTTCCAAAGGGCTGTGAGGGTCCATGTAAGGTACAGTCTTTCGAGTCCAGACACGATGTAGTGCATATAGGTAAGGTAATGTGCATCAGTGATGTCACCCGCGGTACTGGGCTGACCCATCGAGTAGGGAAGCGTTTCTGCGTGAAATCTGTTTATGTTTTGGGTAAGATATGGATGGATGAAAACATCAAGTCCAAAAATCATACTAACAATGTCATGTTCTTTCTCGCCCGTGATCGACGGCCCACTGACAAGCCTCAGGATTTTGGAGAGGTGTTCAACATGTTTGACAACGAGCCTAGCACTGCCACTGTGAAGAATATGCATCGAGACCGCTACCAGGTATTGCGTAAGTGGTATGCAACCGTCACGGGTGGACAGTATGGTGCAAAGGAACAGGCCCTTGTCAAGAAGTTTGTTAGGGTTAACAATTATGTAGTTTATAACCAGCAGGAGGCTGGTAAATATGAGAATCACACCGAGAATGCTCTGATGTTGTATATGGCATGTACCCATGCCTCTAATCCCGTGTACGCGACTCTTAAGATTAGGATTTACTTCTACGATTCTGTAACGAACTGA |
| Protein Sequence | MSKRPADIVISTPASKVRRRLNFDSPYATRVAVPTVRVTKSRMWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLARDRRPTDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
| NCBI Accession | YP_009506528.1 |
|---|---|
| Location | 1060-1452 |
| Gene Name | AC3 |
| Protein Name | AC3 |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGATTCCAAATCCCCTCTATTTCAAGCTCCTCAGCCACGACGTCCGTCCATTCACGACGAACATGGACATACTCACGATCAGGATCCAATTCAACTACAACCTCCGGAGAGCTCTGGGAGTGCACAAATGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCCTCAAGTATCTCAACAATATCGGTGTAATATCAATTAATGCAATTATTAGGGCTGTAAATCATGTATTATGGAATAAATTAGAGCAAACTATGTATGTAGACCTGATCAGAAATAAAAATTAA |
| Protein Sequence | MDSRTGEPITAAQAWNGAYIWEIPNPLYFKLLSHDVRPFTTNMDILTIRIQFNYNLRRALGVHKCFLTYRIWTTLHPPTGLFLRVFKTQVLKYLNNIGVISINAIIRAVNHVLWNKLEQTMYVDLIRNKN |
| NCBI Accession | YP_009506529.1 |
|---|---|
| Location | 1145-1597 |
| Gene Name | AC2 |
| Protein Name | AC2 |
| Coding Region | ATGCGATCTTCGTCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAGGCGCAACCGGAGGAGGAGAGTAGATCTTGAATGCGGGTGTTCTTATTATCTGTCCATCAACTGCCACAATCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCATGGAATGGCGCCTATATCTGGGAGATTCCAAATCCCCTCTATTTCAAGCTCCTCAGCCACGACGTCCGTCCATTCACGACGAACATGGACATACTCACGATCAGGATCCAATTCAACTACAACCTCCGGAGAGCTCTGGGAGTGCACAAATGTTTTCTGACCTACCGAATCTGGACGACCTTACACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAGACCCAAGTCCTCAAGTATCTCAACAATATCGGTGTAATATCAATTAA |
| Protein Sequence | MRSSSPSKDHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSINCHNHGFTHRGTHHCSSSMEWRLYLGDSKSPLFQAPQPRRPSIHDEHGHTHDQDPIQLQPPESSGSAQMFSDLPNLDDLTPSDWSFLKGIQDPSPQVSQQYRCNIN |
| NCBI Accession | YP_009506530.1 |
|---|---|
| Location | 1494-2582 |
| Gene Name | AC1 |
| Protein Name | AC1 |
| Coding Region | ATGCCTCCAAAGCGCTTCGTTATAAACTCCAAAAATTATTTCCTCACTTATCCTAAGTGCTCACTAACCAAAGAGGAAGCACTTTCCCAAATCCAGAATTTCCAAACCCCAACTTCAAAAAAATATATTAAAATCTGCCGAGAATTACATGAGAATGGGGAACCTCATCTGCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAACTAGCTCCTAAAGATTTTGTACTACAATTTCATAATTTAAATGCAAATCTAGACAGAATCTTTCAGGAGCCACCGGCTCCCTATATTTCTCCTTTTTCTTCATCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGATTGGGCGTCCGAGAACGTTGTCGATCCCGCTGCGCGGCCCCTTAGACCTCAGAGTATAGTAATTGAGGGAGACAGTCGAACGGGGAAGACGATGTGGGCTAGGTCACTGGGACCACACAACTATTTGTGTGGACACCTGGACCTAAGTCCCAAAGTATACAGTAACGACGCTTGGTATAACGTCATTGATGACGTTGACCCGCACTTCCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAGTCCAACACAAAATACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTGTGCAATCCTGGTCCCAACAGCAGTTATAAGGAATTCCTCGACGAGGAAAAGAACACCGCATTAAAGAACTGGGCCGTCAAAAATGCGATCTTCGTCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTACAGCACAGGGAAGCGAAGAGGCGCAACCGGAGGAGGAGAGTAGATCTTGA |
| Protein Sequence | MPPKRFVINSKNYFLTYPKCSLTKEEALSQIQNFQTPTSKKYIKICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDFVLQFHNLNANLDRIFQEPPAPYISPFSSSSFDQVPEELEDWASENVVDPAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFVTLEGPLYSGSNQSTAQGSEEAQPEEESRS |
| NCBI Accession | YP_009506531.1 |
|---|---|
| Location | 2126-2434 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGAGAATGGGGAACCTCATCTGCACGTGCTCATCCAGTTCGAGGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTACATCGACAAGGACGGGGACACTCTCGAGTGGGGAGAGTTTCAGATCGATGGAAGATCAGCAAGAGGAGGACAACAGACAGCCAACGACGCTTACGCCGCAGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAACTAG |
| Protein Sequence | MRMGNLICTCSSSSRGNTSARISDSSTWSPQAGQHISIRTFRELNQAPMSSPTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQHLTQAVSQRLLESLGN |
References More References in PubMed
| 1 |
Begomovirus Tomato Leaf Curl New Delhi Virus Is Seedborne but Not Seed Transmitted in Melon. Fortes IM, et al. Plant Dis. 2023 Feb;107(2):473-479. doi: 10.1094/PDIS-09-21-1930-RE. Epub 2023 Feb 15. PMID: 35771117 |
|---|---|
| 2 |
Sub-cellular localization of suppressor proteins of tomato leaf curl New Delhi virus. Sarkar M, et al. Virusdisease. 2021 Jun;32(2):298-304. doi: 10.1007/s13337-021-00651-0. Epub 2021 Apr 10. PMID: 34350318 |
| 3 |
Mandal A, et al. Funct Integr Genomics. 2018 Mar;18(2):101-111. doi: 10.1007/s10142-017-0578-4. Epub 2017 Dec 17. PMID: 29250708 |
| 4 |
First Report of Tomato leaf curl Palampur virus on Bitter Gourd in Pakistan. Ali I, et al. Plant Dis. 2010 Feb;94(2):276. doi: 10.1094/PDIS-94-2-0276A. PMID: 30754274 |
| 5 |
Venkataravanappa V, et al. Acta Virol. 2015 Jun;59(2):125-39. doi: 10.4149/av_2015_02_125. PMID: 26104329 |
| 6 |
Sahu PP, et al. Mol Biotechnol. 2012 Oct;52(2):140-50. doi: 10.1007/s12033-011-9481-8. PMID: 22161255 |
| 7 |
Namrata J, et al. Indian J Virol. 2010 Oct;21(2):128-32. doi: 10.1007/s13337-011-0022-7. Epub 2011 Mar 16. PMID: 23637491 |
| 8 |
Neoh ZY, et al. Plants (Basel). 2023 Jan 6;12(2):272. doi: 10.3390/plants12020272. PMID: 36678986 |
| 9 |
Molecular Characterization of Tomato and Chili Leaf Curl Begomoviruses from Pakistan. Shih SL, et al. Plant Dis. 2003 Feb;87(2):200. doi: 10.1094/PDIS.2003.87.2.200A. PMID: 30812928 |
| 10 |
Lestari SM, et al. Arch Insect Biochem Physiol. 2023 Feb;112(2):e21984. doi: 10.1002/arch.21984. Epub 2022 Nov 17. PMID: 36397643 |