Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000842925.1 |
Release date | 2015/2/12 |
Submitter | Padidam,M., Beachy,R.N., Fauquet,C.M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_803218.1 |
---|---|
Location | 48-434 |
Gene Name | av3 |
Protein Name | AV3 protein |
Coding Region | ATGAAATTCACGCTACATGGCCTATTTAGTGCGTGGGGATCAATAAATAGACTTGCTCACCAAGTTTGGATCCACAAACATGTGGGATCCATTATTGCACGAATTTCCCGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTCCAAGAGATAGAAAAGAACTATTCACCAGACACAGTCGGCTACGATCTTATTCGAGATCTCATTCTTGTTCTCCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACCAAAGCAAAGGCCTGGACCAACAGGCCGATGA |
Protein Sequence | MKFTLHGLFSAWGSINRLAHQVWIHKHVGSIIARISRKRSWSKVHASCKISPRDRKELFTRHSRLRSYSRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTSTAPMELVQLSPLPASPKQRPGPTGR |
NCBI Accession | NP_803219.1 |
---|---|
Location | 127-465 |
Gene Name | av2 |
Protein Name | AV2 protein |
Coding Region | ATGTGGGATCCATTATTGCACGAATTTCCCGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTCCAAGAGATAGAAAAGAACTATTCACCAGACACAGTCGGCTACGATCTTATTCGAGATCTCATTCTTGTTCTCCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACCAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTATAG |
Protein Sequence | MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLIRDLILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHQSKGLDQQADEQKTQNVQNV |
NCBI Accession | NP_803220.1 |
---|---|
Location | 287-1057 |
Gene Name | av1 |
Protein Name | AV1 protein |
Coding Region | ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACCAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTGCAGTCCTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGTGTTAGTGATGTTACCCGAGGAACTGGACTCACACATCGCGTAGGGAAGCGATTCTGTGTGAAATCTGTCTATGTGCTGGGAAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTCTGGTTCGTGACCGTCGTCCTACAGGATCTCCCCAGGATTTCGGGGAAGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTACTTTTATGATTCGGCCACAAATTAA |
Protein Sequence | MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSATN |
NCBI Accession | NP_803221.1 |
---|---|
Location | 317-802 |
Gene Name | ac5 |
Protein Name | AC5 protein |
Coding Region | ATGCATGTTCTTCACCGTTGCTGTGCTCGGTTCATTGTCAAACATATTAAACACTTCCCCGAAATCCTGGGGAGATCCTGTAGGACGACGGTCACGAACCAGAAAAAACATGACACTGTTAGTATGGTTTTTTGTCTTGATGTTTTCATCCATCCATATCTTTCCCAGCACATAGACAGATTTCACACAGAATCGCTTCCCTACGCGATGTGTGAGTCCAGTTCCTCGGGTAACATCACTAACACACATGACTTTGCCAATATGAGAGACATCGTGCCTAGATTCAAAGGACTGCACTTTACAAGGGCCTTCACAGCCCCTTGGCACGTCGGGACTTCTATACATTCTGTACATTCTGGGTTTTCTGTTCATCGGCCTGTTGGTCCAGGCCTTTGCTTTGGTGACGCGGGCAATGGGGACAACTGCACGAGCTCCATAGGGGCTGTCGAAGTTGAGACGTCGGCGTACCTTCGATGCGGGCGTTGA |
Protein Sequence | MHVLHRCCARFIVKHIKHFPEILGRSCRTTVTNQKKHDTVSMVFCLDVFIHPYLSQHIDRFHTESLPYAMCESSSSGNITNTHDFANMRDIVPRFKGLHFTRAFTAPWHVGTSIHSVHSGFSVHRPVGPGLCFGDAGNGDNCTSSIGAVEVETSAYLRCGR |
NCBI Accession | NP_803222.1 |
---|---|
Location | 1054-1464 |
Gene Name | ac3 |
Protein Name | AC3 protein |
Coding Region | ATGATCACGGATTCACGCACAGGGGAATACATCACTGCGGATCGAGCAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTCATAGGAATTTATAATGTAATAAGAGCAGTTTATCATGTATTGGATAATGTATTGGAGCAAACAATTGATGTATGGACTTCGTATGATATAAAACTGGATATTTATTAA |
Protein Sequence | MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGIYNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY |
NCBI Accession | NP_803223.1 |
---|---|
Location | 1184-1603 |
Gene Name | ac2 |
Protein Name | AC2 protein |
Coding Region | ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCTCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTACCGTGTGGTTGTTCGTATTACATATCGATCAACTGCCATGATCACGGATTCACGCACAGGGGAATACATCACTGCGGATCGAGCAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAA |
Protein Sequence | MQSSSHSKNHSIPVAKTSLSQKKKKSIRRRRVDLPCGCSYYISINCHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP |
NCBI Accession | NP_803224.1 |
---|---|
Location | 1506-2591 |
Gene Name | ac1 |
Protein Name | AC1 protein |
Coding Region | ATGGCTTCGCCACGTCGTTTTAGAGTAAATGCCAAAAACTATTTCCTCACATATCCAAAGTGCTCTCTAACTAAAGAAGAGGCACTCTCCCAATTGCAAACCCTAGAAACCCCGACGAAGAAGAAATTCATCAAGATCTGTAGAGAGCTTCACGAAGATGGGTCTCCGCATATCCATGTTCTCATCCAATTCGAAGGGAAATTCCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAGCGTCGGACGTCAAAAACTACATCGCCAAAGATGGAGACGTTCTAGAATGGGGTGTTTTCCAGATCGATGGACGATCTGCCCGTGGTGGTCAACAAACGGCGAACGATGCATATGCCCAGGCGATTAACACGGGAAATAAAGACGATGCTTTGAGAGTATTAAAGGAATTAGCCCCAAAAGATTACGTTCTGCAGTTTCACAATTTAAATACCAATTTAGATCGTATTTTTCAACCTCCTTCCGAGGTTTATGTTTCTCCATTTTCAATTTCATCCTTCGACAGAGTTCCGGCAGACCTCGTCGATTGGGTCTCGTCTAATGTTGTGTGTGCCGCTGCGCGGCCTTTTAGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGGACGGGCAAAACGATGTGGGCTCGGTGCTTAGGACCACACAATTACTTGTGTGGACATCTTGATCTGAGCCCAAAGGTCTATAGCAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGCCAAAGCAACACGAAGTACGGAAAGCCGGTCATGATTAAAGGTGGAATTCCCACTATCTTCCTGTGCAATAAAGGTCCAAACAGCAGCTATAAGGAATATCTGGATGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCTCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA |
Protein Sequence | MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIKICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKNYIAKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFHNLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDCQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIALPEEEEEHSQEAS |
NCBI Accession | NP_803225.1 |
---|---|
Location | 2258-2434 |
Gene Name | ac4 |
Protein Name | AC4 protein |
Coding Region | ATGGGTCTCCGCATATCCATGTTCTCATCCAATTCGAAGGGAAATTCCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAGCGTCGGACGTCAAAAACTACATCGCCAAAGATGGAGACGTTCTAG |
Protein Sequence | MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQRRTSKTTSPKMETF |
NCBI Accession | NP_803226.1 |
---|---|
Location | 405-1250 |
Gene Name | BV1 |
Protein Name | nuclear shuttle protein |
Coding Region | ATGGTGTTTCCGTTGCCACACATTTCCTATCCCAGCCAAATGGCGTTTCCCTCTCCTTATTCCACGCCTCGTCGTTCGGGTTACCCATTCAACAGAACATACAACGGAAACAAGAGTTTCCGCTTGTGGAAGACCCGGAAGTATCAAAACTGGAAGCGCTATCGCAGTACCCATTCCATAGCACGTTCTCCAACCGAACTGTTTGGCGATCCAATCTCCAAACAATATACGCGTAAGGAAATCTGTGAAACACAGGAGGGTTCGGAGTATCTGCTGCACAACAATCGTTACATGACGTCATATGTCACGTATCCATCAAAAACAAGAACTGGAACGGACAACCGCGTTCGTTCCTATATCAAGCTAAAGAGTCTGAACATATCTGGGACATTTGCTGTTCGTAAATCTGACTTGATGACCGAAGTGGTGCAAACAAATGGTCTATACGGAGTGATGTCTATAGTTGTAGTCCGCGATAAATCTCCAAAGATTTATTCTGCGACCCAACCTTTAATACCGTTTGTTGAGCTATTTGGATCTGTTAATGCTTGCAGGGGCAGTCTGAAAGTGGCAGAACGCCACCATGAACGCTTCGTACTTCTGAATCAAACATCCATCGTTGTCAATACCCCACATTCCAACGCTATCAAGAAATTCTGCATTCGTAACTGCATCCCAAGAACTTACACAACCTGGGTAACGTTCAAGGACGAAGAAGAAGATAGCTGTACTGGACGATATTCTAACACCCTCCGAAATGCAATTATTTTATATTATGTATGGTTAAGCGATGTATCCTCACAAGTCGATCTTTACAGCAATGTAATTCTTAATTACATTGGATAA |
Protein Sequence | MVFPLPHISYPSQMAFPSPYSTPRRSGYPFNRTYNGNKSFRLWKTRKYQNWKRYRSTHSIARSPTELFGDPISKQYTRKEICETQEGSEYLLHNNRYMTSYVTYPSKTRTGTDNRVRSYIKLKSLNISGTFAVRKSDLMTEVVQTNGLYGVMSIVVVRDKSPKIYSATQPLIPFVELFGSVNACRGSLKVAERHHERFVLLNQTSIVVNTPHSNAIKKFCIRNCIPRTYTTWVTFKDEEEDSCTGRYSNTLRNAIILYYVWLSDVSSQVDLYSNVILNYIG |
NCBI Accession | NP_803227.1 |
---|---|
Location | 1276-2154 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGTCAATAGGAAATGATGGTATGGGTATGGGAGTAGGTGGGTATATTCAATCTGAGCGCGTTGAGTACGCTCTCACAAACGATGCTGCAGAAGTTACCTTGTCATTTCCATCCATGTTCGAGCAGAAGCTTAGCCAGTTGAGGAATAGATGCATGAAAATAGATCACGTAGTTCTGGAATATCGCAGTCAGGTTCCAATTAATGCTGTTGGTCATGTCGTGGTAGAGATACACGACATGAGATTGACGGAGGGGGACACAAAACAAGCGGAATTCACAATTCCGATCAAATGCAATTGCAACCTGCACTACTACTCTTCCTCATTCTTCTCTCTCAAGGATAAGAATCCTTGGAGAGTTGAATACCGAGTGGAGAACACAAACGTCGTGAATGGGGTACACTTCTGTAAGATGCTAGGGAAATTGAAGCTGTCGTCGGCTAAACATTCGACTGACGTCGAATTCCGACCACCAAAGATAGAAATACAGACCAAGGAATTCACTATGAACGACATTGATTTCTGGTCTGTGGGTTCCAAACCACAAACAAGGCGTCTTGTAGATGGTTCAAGGTTAATGGGACATAGTTCAAGATCGTTACGGGTACCCTATCTGGCTATAGGTCCGAACGAATCATGGGCAAGCAGATCGGAGATCGGACTTTCGTCCGTCACCAGCAGACCATATAAAAATCTGAGCGGATTGGATGATTCGGCAATTGATCCAGGTCCATCGGCATCACAGGCGGGGAGTATTACAAGGGAAGAGATTGCAGATATAATTACGGAAGACTGTAGAGCAATGTATAAAATCCAATGTAAATGCTCCAGTATCGAAGAGCGTGTAATAAATTTTAAGCCAAATTTATTCAAAAAATAA |
Protein Sequence | MSIGNDGMGMGVGGYIQSERVEYALTNDAAEVTLSFPSMFEQKLSQLRNRCMKIDHVVLEYRSQVPINAVGHVVVEIHDMRLTEGDTKQAEFTIPIKCNCNLHYYSSSFFSLKDKNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQTKEFTMNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPYLAIGPNESWASRSEIGLSSVTSRPYKNLSGLDDSAIDPGPSASQAGSITREEIADIITEDCRAMYKIQCKCSSIEERVINFKPNLFKK |
1 |
Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production. Cai L, et al. aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep. PMID: 37970471 |
---|---|
2 |
Zaidi SS, et al. Mol Plant Pathol. 2017 Sep;18(7):901-911. doi: 10.1111/mpp.12481. Epub 2016 Oct 17. PMID: 27553982 |
3 |
Tomato Leaf Curl New Delhi Virus: An Emerging Virus Complex Threatening Vegetable and Fiber Crops. Moriones E, et al. Viruses. 2017 Sep 21;9(10):264. doi: 10.3390/v9100264. PMID: 28934148 |
4 |
Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China. Li R, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print. PMID: 36281022 |
5 |
Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci. Janssen D, et al. Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390. PMID: 35161372 |
6 |
Seed Transmission of Tomato Leaf Curl New Delhi Virus from Zucchini Squash in Italy. Kil EJ, et al. Plants (Basel). 2020 Apr 29;9(5):563. doi: 10.3390/plants9050563. PMID: 32365497 |
7 |
Pest categorisation of tomato leaf curl New Delhi virus. EFSA Panel on Plant Health (PLH), et al. EFSA J. 2020 Jul 7;18(7):e06179. doi: 10.2903/j.efsa.2020.6179. eCollection 2020 Jul. PMID: 32665794 |
8 |
First report of tomato leaf curl New Delhi virus infecting several cucurbit plants in China. Gu Q, et al. Plant Dis. 2023 Apr 20. doi: 10.1094/PDIS-01-23-0180-PDN. Online ahead of print. PMID: 37081636 |
9 |
Begomovirus Tomato Leaf Curl New Delhi Virus Is Seedborne but Not Seed Transmitted in Melon. Fortes IM, et al. Plant Dis. 2023 Feb;107(2):473-479. doi: 10.1094/PDIS-09-21-1930-RE. Epub 2023 Feb 15. PMID: 35771117 |
10 |
Naganur P, et al. Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490. PMID: 36771575 |