| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000842925.1 |
| Release date | 2015/2/12 |
| Submitter | Padidam,M., Beachy,R.N., Fauquet,C.M. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
| NCBI Accession | NP_803218.1 |
|---|---|
| Location | 48-434 |
| Gene Name | av3 |
| Protein Name | AV3 protein |
| Coding Region | ATGAAATTCACGCTACATGGCCTATTTAGTGCGTGGGGATCAATAAATAGACTTGCTCACCAAGTTTGGATCCACAAACATGTGGGATCCATTATTGCACGAATTTCCCGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTCCAAGAGATAGAAAAGAACTATTCACCAGACACAGTCGGCTACGATCTTATTCGAGATCTCATTCTTGTTCTCCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACCAAAGCAAAGGCCTGGACCAACAGGCCGATGA |
| Protein Sequence | MKFTLHGLFSAWGSINRLAHQVWIHKHVGSIIARISRKRSWSKVHASCKISPRDRKELFTRHSRLRSYSRSHSCSPSKELWRSDQQISSFQRPHRRYADVSTSTAPMELVQLSPLPASPKQRPGPTGR |
| NCBI Accession | NP_803219.1 |
|---|---|
| Location | 127-465 |
| Gene Name | av2 |
| Protein Name | AV2 protein |
| Coding Region | ATGTGGGATCCATTATTGCACGAATTTCCCGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTCCAAGAGATAGAAAAGAACTATTCACCAGACACAGTCGGCTACGATCTTATTCGAGATCTCATTCTTGTTCTCCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACCAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTATAG |
| Protein Sequence | MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLIRDLILVLRAKNYGEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHQSKGLDQQADEQKTQNVQNV |
| NCBI Accession | NP_803220.1 |
|---|---|
| Location | 287-1057 |
| Gene Name | av1 |
| Protein Name | AV1 protein |
| Coding Region | ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACCAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTGCAGTCCTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGTGTTAGTGATGTTACCCGAGGAACTGGACTCACACATCGCGTAGGGAAGCGATTCTGTGTGAAATCTGTCTATGTGCTGGGAAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTCTGGTTCGTGACCGTCGTCCTACAGGATCTCCCCAGGATTTCGGGGAAGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTACTTTTATGATTCGGCCACAAATTAA |
| Protein Sequence | MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSATN |
| NCBI Accession | NP_803221.1 |
|---|---|
| Location | 317-802 |
| Gene Name | ac5 |
| Protein Name | AC5 protein |
| Coding Region | ATGCATGTTCTTCACCGTTGCTGTGCTCGGTTCATTGTCAAACATATTAAACACTTCCCCGAAATCCTGGGGAGATCCTGTAGGACGACGGTCACGAACCAGAAAAAACATGACACTGTTAGTATGGTTTTTTGTCTTGATGTTTTCATCCATCCATATCTTTCCCAGCACATAGACAGATTTCACACAGAATCGCTTCCCTACGCGATGTGTGAGTCCAGTTCCTCGGGTAACATCACTAACACACATGACTTTGCCAATATGAGAGACATCGTGCCTAGATTCAAAGGACTGCACTTTACAAGGGCCTTCACAGCCCCTTGGCACGTCGGGACTTCTATACATTCTGTACATTCTGGGTTTTCTGTTCATCGGCCTGTTGGTCCAGGCCTTTGCTTTGGTGACGCGGGCAATGGGGACAACTGCACGAGCTCCATAGGGGCTGTCGAAGTTGAGACGTCGGCGTACCTTCGATGCGGGCGTTGA |
| Protein Sequence | MHVLHRCCARFIVKHIKHFPEILGRSCRTTVTNQKKHDTVSMVFCLDVFIHPYLSQHIDRFHTESLPYAMCESSSSGNITNTHDFANMRDIVPRFKGLHFTRAFTAPWHVGTSIHSVHSGFSVHRPVGPGLCFGDAGNGDNCTSSIGAVEVETSAYLRCGR |
| NCBI Accession | NP_803222.1 |
|---|---|
| Location | 1054-1464 |
| Gene Name | ac3 |
| Protein Name | AC3 protein |
| Coding Region | ATGATCACGGATTCACGCACAGGGGAATACATCACTGCGGATCGAGCAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTCATAGGAATTTATAATGTAATAAGAGCAGTTTATCATGTATTGGATAATGTATTGGAGCAAACAATTGATGTATGGACTTCGTATGATATAAAACTGGATATTTATTAA |
| Protein Sequence | MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGIYNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY |
| NCBI Accession | NP_803223.1 |
|---|---|
| Location | 1184-1603 |
| Gene Name | ac2 |
| Protein Name | AC2 protein |
| Coding Region | ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCTCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTACCGTGTGGTTGTTCGTATTACATATCGATCAACTGCCATGATCACGGATTCACGCACAGGGGAATACATCACTGCGGATCGAGCAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAA |
| Protein Sequence | MQSSSHSKNHSIPVAKTSLSQKKKKSIRRRRVDLPCGCSYYISINCHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP |
| NCBI Accession | NP_803224.1 |
|---|---|
| Location | 1506-2591 |
| Gene Name | ac1 |
| Protein Name | AC1 protein |
| Coding Region | ATGGCTTCGCCACGTCGTTTTAGAGTAAATGCCAAAAACTATTTCCTCACATATCCAAAGTGCTCTCTAACTAAAGAAGAGGCACTCTCCCAATTGCAAACCCTAGAAACCCCGACGAAGAAGAAATTCATCAAGATCTGTAGAGAGCTTCACGAAGATGGGTCTCCGCATATCCATGTTCTCATCCAATTCGAAGGGAAATTCCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAGCGTCGGACGTCAAAAACTACATCGCCAAAGATGGAGACGTTCTAGAATGGGGTGTTTTCCAGATCGATGGACGATCTGCCCGTGGTGGTCAACAAACGGCGAACGATGCATATGCCCAGGCGATTAACACGGGAAATAAAGACGATGCTTTGAGAGTATTAAAGGAATTAGCCCCAAAAGATTACGTTCTGCAGTTTCACAATTTAAATACCAATTTAGATCGTATTTTTCAACCTCCTTCCGAGGTTTATGTTTCTCCATTTTCAATTTCATCCTTCGACAGAGTTCCGGCAGACCTCGTCGATTGGGTCTCGTCTAATGTTGTGTGTGCCGCTGCGCGGCCTTTTAGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGGACGGGCAAAACGATGTGGGCTCGGTGCTTAGGACCACACAATTACTTGTGTGGACATCTTGATCTGAGCCCAAAGGTCTATAGCAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGCCAAAGCAACACGAAGTACGGAAAGCCGGTCATGATTAAAGGTGGAATTCCCACTATCTTCCTGTGCAATAAAGGTCCAAACAGCAGCTATAAGGAATATCTGGATGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCTCCCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA |
| Protein Sequence | MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTKKKFIKICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKNYIAKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFHNLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDCQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIALPEEEEEHSQEAS |
| NCBI Accession | NP_803225.1 |
|---|---|
| Location | 2258-2434 |
| Gene Name | ac4 |
| Protein Name | AC4 protein |
| Coding Region | ATGGGTCTCCGCATATCCATGTTCTCATCCAATTCGAAGGGAAATTCCAGTGCAAAAATAACAGATTCTTCGACTTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAGCGTCGGACGTCAAAAACTACATCGCCAAAGATGGAGACGTTCTAG |
| Protein Sequence | MGLRISMFSSNSKGNSSAKITDSSTWFPQVGQHISIRTFRELNQRRTSKTTSPKMETF |
| NCBI Accession | NP_803226.1 |
|---|---|
| Location | 405-1250 |
| Gene Name | BV1 |
| Protein Name | nuclear shuttle protein |
| Coding Region | ATGGTGTTTCCGTTGCCACACATTTCCTATCCCAGCCAAATGGCGTTTCCCTCTCCTTATTCCACGCCTCGTCGTTCGGGTTACCCATTCAACAGAACATACAACGGAAACAAGAGTTTCCGCTTGTGGAAGACCCGGAAGTATCAAAACTGGAAGCGCTATCGCAGTACCCATTCCATAGCACGTTCTCCAACCGAACTGTTTGGCGATCCAATCTCCAAACAATATACGCGTAAGGAAATCTGTGAAACACAGGAGGGTTCGGAGTATCTGCTGCACAACAATCGTTACATGACGTCATATGTCACGTATCCATCAAAAACAAGAACTGGAACGGACAACCGCGTTCGTTCCTATATCAAGCTAAAGAGTCTGAACATATCTGGGACATTTGCTGTTCGTAAATCTGACTTGATGACCGAAGTGGTGCAAACAAATGGTCTATACGGAGTGATGTCTATAGTTGTAGTCCGCGATAAATCTCCAAAGATTTATTCTGCGACCCAACCTTTAATACCGTTTGTTGAGCTATTTGGATCTGTTAATGCTTGCAGGGGCAGTCTGAAAGTGGCAGAACGCCACCATGAACGCTTCGTACTTCTGAATCAAACATCCATCGTTGTCAATACCCCACATTCCAACGCTATCAAGAAATTCTGCATTCGTAACTGCATCCCAAGAACTTACACAACCTGGGTAACGTTCAAGGACGAAGAAGAAGATAGCTGTACTGGACGATATTCTAACACCCTCCGAAATGCAATTATTTTATATTATGTATGGTTAAGCGATGTATCCTCACAAGTCGATCTTTACAGCAATGTAATTCTTAATTACATTGGATAA |
| Protein Sequence | MVFPLPHISYPSQMAFPSPYSTPRRSGYPFNRTYNGNKSFRLWKTRKYQNWKRYRSTHSIARSPTELFGDPISKQYTRKEICETQEGSEYLLHNNRYMTSYVTYPSKTRTGTDNRVRSYIKLKSLNISGTFAVRKSDLMTEVVQTNGLYGVMSIVVVRDKSPKIYSATQPLIPFVELFGSVNACRGSLKVAERHHERFVLLNQTSIVVNTPHSNAIKKFCIRNCIPRTYTTWVTFKDEEEDSCTGRYSNTLRNAIILYYVWLSDVSSQVDLYSNVILNYIG |
| NCBI Accession | NP_803227.1 |
|---|---|
| Location | 1276-2154 |
| Gene Name | BC1 |
| Protein Name | movement protein |
| Coding Region | ATGTCAATAGGAAATGATGGTATGGGTATGGGAGTAGGTGGGTATATTCAATCTGAGCGCGTTGAGTACGCTCTCACAAACGATGCTGCAGAAGTTACCTTGTCATTTCCATCCATGTTCGAGCAGAAGCTTAGCCAGTTGAGGAATAGATGCATGAAAATAGATCACGTAGTTCTGGAATATCGCAGTCAGGTTCCAATTAATGCTGTTGGTCATGTCGTGGTAGAGATACACGACATGAGATTGACGGAGGGGGACACAAAACAAGCGGAATTCACAATTCCGATCAAATGCAATTGCAACCTGCACTACTACTCTTCCTCATTCTTCTCTCTCAAGGATAAGAATCCTTGGAGAGTTGAATACCGAGTGGAGAACACAAACGTCGTGAATGGGGTACACTTCTGTAAGATGCTAGGGAAATTGAAGCTGTCGTCGGCTAAACATTCGACTGACGTCGAATTCCGACCACCAAAGATAGAAATACAGACCAAGGAATTCACTATGAACGACATTGATTTCTGGTCTGTGGGTTCCAAACCACAAACAAGGCGTCTTGTAGATGGTTCAAGGTTAATGGGACATAGTTCAAGATCGTTACGGGTACCCTATCTGGCTATAGGTCCGAACGAATCATGGGCAAGCAGATCGGAGATCGGACTTTCGTCCGTCACCAGCAGACCATATAAAAATCTGAGCGGATTGGATGATTCGGCAATTGATCCAGGTCCATCGGCATCACAGGCGGGGAGTATTACAAGGGAAGAGATTGCAGATATAATTACGGAAGACTGTAGAGCAATGTATAAAATCCAATGTAAATGCTCCAGTATCGAAGAGCGTGTAATAAATTTTAAGCCAAATTTATTCAAAAAATAA |
| Protein Sequence | MSIGNDGMGMGVGGYIQSERVEYALTNDAAEVTLSFPSMFEQKLSQLRNRCMKIDHVVLEYRSQVPINAVGHVVVEIHDMRLTEGDTKQAEFTIPIKCNCNLHYYSSSFFSLKDKNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQTKEFTMNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPYLAIGPNESWASRSEIGLSSVTSRPYKNLSGLDDSAIDPGPSASQAGSITREEIADIITEDCRAMYKIQCKCSSIEERVINFKPNLFKK |
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Host Species-Dependent Transmission of Tomato Leaf Curl New Delhi Virus-ES by Bemisia tabaci. Janssen D, et al. Plants (Basel). 2022 Jan 30;11(3):390. doi: 10.3390/plants11030390. PMID: 35161372 |
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Detection of Tomato Leaf Curl New Delhi Virus-ES by Real-Time Quantitative PCR. Janssen D, et al. Methods Mol Biol. 2025;2912:145-156. doi: 10.1007/978-1-0716-4454-6_12. PMID: 40064778 |
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Coat protein is responsible for tomato leaf curl New Delhi virus pathogenicity in tomato. Vo TTB, et al. Front Plant Sci. 2023 Jul 10;14:1206255. doi: 10.3389/fpls.2023.1206255. eCollection 2023. PMID: 37492775 |