Tomato leaf curl Namakely virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002987045.1
Isolate Madagascar:Antsiranana, Namakely
Release date 2018/8/26
Submitter Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038899
ACCGGATGGCCGCGCCCCCGAAAAAGGAATGTGGTCCCCACGCACTAGTCTATGTCAGCCAATCAGAATAGCGCTTGAAAGCTTAGTTATTTGTTTTTGTCTTTATATACTTGGGCCGTAAGTTGTTTAAAGTGCAACATGTGGGATCCATTGTTAAATGAATTTCCGGACTCTGTGCATGGGTTTCGTTGTATGCTTGCCATAAAATATCTGCAGGCCGTTGAGCAAACTTATGAGCCCAATACATTGGGCCACGATTTAATTCGAGATTTAATTTCTGTGATTAGAGCCCGTGACTATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGCAGAGGGATGATGTTAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCCATTTACATTTTAGGGAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGGCCTTCTCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACAGTGAAGAATGATTTGAGAGACAGATATCAAGTTATGCGGAAATTTCATGCAACTGTTGTTGGTGGACCCTCAGGGATGAGAGAGCAGACTTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACGTATAATCATCAGGAGCAGGCTAAGTATGAGAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACTCTTAAGATACGGATCTATTTTTATGATTCGGTCAGCAATTAATAAATATTGAATTTTATTTCATAATTCTCCTCAACTTGGAGTGTATTTACAAGTACATCGTACAATACATAATCAACTGCTCTTATTACATTGTTAATTGAAATAATTCCTAATCTATCTAAATACATGAGAACTTGAGTCCTAAATACTCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGATCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGATGTTGTGGTTGAACCGTATCTGGATTGATATGATGTCGTGGTTCATGTTGAATGGTCTGATGCTGTGGTCGATTATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGGTTTGTGCAGTTGATGTGTAGATAATAGGAGCAACCGCAGTCTAGGTCAATTCTTCTACGCCTCACTGCTTTCCTCTTGGCTATGCGGTGGTGGACCTTGATTGGTACTTGAGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTCAGTGCCCAGGCTTTTAGTGGTGCATTTTTCTCCTCGTCTAGATATTCTTTATAAGAGGATGTTGGTCCTGGATTGCAGAGGAATATAGTGGGAATTCCGCCTTTTATTTGAATTGGCTTCCCGTACTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTTTTAAATAATGCGGGTCCACGTCATCAATGATGTTGAACCATGCATCATTGCTGTAGACTTTAGGACTCAGGTCAAGATGACCACATAAATAGTTGTGGGGTCCTAATGATCTGGCCCACATCGTCTTCCCCGTCCTACTATCACCCTCAATTACAATACTAATCGGTCTCCACGGCCGCGCAGCGGCATCCCTGATGTTCTCCGACACCCAAACTTCAAGTTCTTCGGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGAAACATAAGGAGCCGGAGGCTCCTTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACATAATCTTTTGGGACTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGAGCTGTGGCGTAAGCGTCATTGGCGGATTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCGCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGGCCTTGTTGGGGATACAAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTTCCTTCGAACTGGATAAGCATGTGCAGATGAGGTTCCCCATTTTCGTGTAATTCTCTGCAAATTTTGATGAATAATTTGTTTACTGGGGTTTGTAAGGCTTGTATTTGGGATAGTGCTTCCTCTTTTGTGAGAGAGCACTTTGGATAAGTGAGGAAAAAATTTTTAGCAAAAATTTTAAAGCGACGTGGGGGAGCCATTTAGTCAATGTACACCGATTGACTATCGAGAGCATTTAGTGCTTGCAATCGGTGTATCGGTGTGCAATATATAGGTGTACACCAAATGGCATTTCCGTAATAAGTCTTATTGTAATTTAAATTTTGAAATTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508199.1
Location 139-489
Gene Name v2
Protein Name V2 protein
Coding Region ATGTGGGATCCATTGTTAAATGAATTTCCGGACTCTGTGCATGGGTTTCGTTGTATGCTTGCCATAAAATATCTGCAGGCCGTTGAGCAAACTTATGAGCCCAATACATTGGGCCACGATTTAATTCGAGATTTAATTTCTGTGATTAGAGCCCGTGACTATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGASKAELRQPIYQPCCCPHCPRHKQTSIMDLQAHVSKAQDVQNVQKP

NCBI Accession YP_009508200.1
Location 299-1075
Gene Name cp
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGCAGAGGGATGATGTTAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCCATTTACATTTTAGGGAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGGCCTTCTCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACAGTGAAGAATGATTTGAGAGACAGATATCAAGTTATGCGGAAATTTCATGCAACTGTTGTTGGTGGACCCTCAGGGATGAGAGAGCAGACTTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACGTATAATCATCAGGAGCAGGCTAAGTATGAGAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACTCTTAAGATACGGATCTATTTTTATGATTCGGTCAGCAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAAPIVPGTNRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMREQTLVKRFFRINSHVTYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009508201.1
Location 1072-1476
Gene Name c3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCGACCACAGCATCAGACCATTCAACATGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACATCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGATCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACTCAAGTTCTCATGTATTTAGATAGATTAGGAATTATTTCAATTAACAATGTAATAAGAGCAGTTGATTATGTATTGTACGATGTACTTGTAAATACACTCCAAGTTGAGGAGAATTATGAAATAAAATTCAATATTTATTAA
Protein Sequence MDLRTGELITAAQAQSGVFIWEIQNPLYFKIIDHSIRPFNMNHDIISIQIRFNHNIRKELGIHKCFLNFKIWTSLRPQTGRFLRVFRTQVLMYLDRLGIISINNVIRAVDYVLYDVLVNTLQVEENYEIKFNIY

NCBI Accession YP_009508202.1
Location 1217-1624
Gene Name c2
Protein Name C2 protein
Coding Region ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCTCAAGTACCAATCAAGGTCCACCACCGCATAGCCAAGAGGAAAGCAGTGAGGCGTAGAAGAATTGACCTAGACTGCGGTTGCTCCTATTATCTACACATCAACTGCACAAACCATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCGACCACAGCATCAGACCATTCAACATGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACATCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGATCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MRPSSPSTSHCSQVPIKVHHRIAKRKAVRRRRIDLDCGCSYYLHINCTNHGFTHRGTHHCSSSTEWRVYLGDTKSPIFQDNRPQHQTIQHEPRHHINPDTVQPQHQEGTGDSQMFSQLQDLDELTPSDWSFLKSI

NCBI Accession YP_009508203.1
Location 1533-2612
Gene Name rep
Protein Name replication associated protein
Coding Region ATGGCTCCCCCACGTCGCTTTAAAATTTTTGCTAAAAATTTTTTCCTCACTTATCCAAAGTGCTCTCTCACAAAAGAGGAAGCACTATCCCAAATACAAGCCTTACAAACCCCAGTAAACAAATTATTCATCAAAATTTGCAGAGAATTACACGAAAATGGGGAACCTCATCTGCACATGCTTATCCAGTTCGAAGGAAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTTGTATCCCCAACAAGGCCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCCGCCAATGACGCTTACGCCACAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGTCCCAAAAGATTATGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTAAGGAGCCTCCGGCTCCTTATGTTTCTCCATTTCTTTCTTCTTCTTTTAATCAAGTTCCCGAAGAACTTGAAGTTTGGGTGTCGGAGAACATCAGGGATGCCGCTGCGCGGCCGTGGAGACCGATTAGTATTGTAATTGAGGGTGATAGTAGGACGGGGAAGACGATGTGGGCCAGATCATTAGGACCCCACAACTATTTATGTGGTCATCTTGACCTGAGTCCTAAAGTCTACAGCAATGATGCATGGTTCAACATCATTGATGACGTGGACCCGCATTATTTAAAACATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGAGCAACACAAAGTACGGGAAGCCAATTCAAATAAAAGGCGGAATTCCCACTATATTCCTCTGCAATCCAGGACCAACATCCTCTTATAAAGAATATCTAGACGAGGAGAAAAATGCACCACTAAAAGCCTGGGCACTGAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCTCAAGTACCAATCAAGGTCCACCACCGCATAGCCAAGAGGAAAGCAGTGAGGCGTAG
Protein Sequence MAPPRRFKIFAKNFFLTYPKCSLTKEEALSQIQALQTPVNKLFIKICRELHENGEPHLHMLIQFEGKYQCTNQRFFDLVSPTRPAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYATALNAGSKSEALRVIKELVPKDYVLQFHNLNSNLDRIFKEPPAPYVSPFLSSSFNQVPEELEVWVSENIRDAAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAPLKAWALKNATFVTLHEPLFSSTNQGPPPHSQEESSEA

NCBI Accession YP_009508204.1
Location 2153-2455
Gene Name c4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCACATGCTTATCCAGTTCGAAGGAAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTTGTATCCCCAACAAGGCCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCCGCCAATGACGCTTACGCCACAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG
Protein Sequence MGNLICTCLSSSKESTSARIRDSSTLYPQQGQHISIRTFRELNPAPTSSPTSTRTETPSNGASFRSMEDLQEGDNNPPMTLTPQLLTQAVSQRLLESLRN

References More References in PubMed

1

Genetic diversity and infectivity analysis of tomato yellow leaf curl virus Oman and its associated betasatellite.

Al-Matroushi AR, et al.  Cell Mol Biol (Noisy-le-grand). 2024 Nov 27;70(11):101-108. doi: 10.14715/cmb/2024.70.11.15.

PMID: 39707774
2

Implication of whitefly vesicle associated membrane protein-associated protein B in the transmission of Tomato yellow leaf curl virus.

Zhao J, et al.  Virology. 2019 Sep;535:210-217. doi: 10.1016/j.virol.2019.07.007. Epub 2019 Jul 11.

PMID: 31319278
3

Introduction of the Exotic Tomato yellow leaf curl virus-Israel in Tomato to Puerto Rico.

Bird J, et al.  Plant Dis. 2001 Sep;85(9):1028. doi: 10.1094/PDIS.2001.85.9.1028B.

PMID: 30823090
4

Genomic dissection of ROS detoxifying enzyme encoding genes for their role in antioxidative defense mechanism against Tomato leaf curl New Delhi virus infection in tomato.

Sharma N, et al.  Genomics. 2021 May;113(3):889-899. doi: 10.1016/j.ygeno.2021.01.022. Epub 2021 Jan 30.

PMID: 33524498
5

The C2 Protein from the Geminivirus Tomato Yellow Leaf Curl Sardinia Virus Decreases Sensitivity to Jasmonates and Suppresses Jasmonate-Mediated Defences.

Rosas-Díaz T, et al.  Plants (Basel). 2016 Jan 15;5(1):8. doi: 10.3390/plants5010008.

PMID: 27135228
6

Factors Determining Transmission of Persistent Viruses by Bemisia tabaci and Emergence of New Virus-Vector Relationships.

Ghosh S, et al.  Viruses. 2021 Sep 11;13(9):1808. doi: 10.3390/v13091808.

PMID: 34578388
7

Identification and molecular characterization of cotton leaf curl Gezira betasatellite and two distinct begomoviruses infecting papaya trees in the Kingdom of Saudi Arabia.

Hussain K, et al.  Cell Mol Biol (Noisy-le-grand). 2022 Sep 30;68(9):129-134. doi: 10.14715/cmb/2022.68.9.20.

PMID: 36905263
8

Enhanced association of whitefly-begomovirus competence with plant-mediated mutualism.

He WZ, et al.  Pest Manag Sci. 2025 Apr;81(4):2126-2132. doi: 10.1002/ps.8613. Epub 2024 Dec 18.

PMID: 39691989
9

Geographical distribution of tomato-infecting begomoviruses in major cucurbits in India: a diagnostic analysis using begomovirus species specific PCR.

Nayaka SN, et al.  Virusdisease. 2023 Sep;34(3):421-430. doi: 10.1007/s13337-023-00837-8. Epub 2023 Sep 8.

PMID: 37780909
10

Insights into Novel Viral Threats in Sweetpotato from Burkina Faso: Characterisation of Unexplored Pathogens.

Name PE, et al.  Viruses. 2025 Sep 7;17(9):1222. doi: 10.3390/v17091222.

PMID: 41012650