Tomato leaf curl Moheli virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002987035.1
Isolate Comoros:Moheli, Fomboni
Release date 2018/8/26
Submitter Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038897
ACCGGATGGCCGCGCCCGAAAAAGAAAAGTGGACCCTCCCCATGATTTATTGTCCGCCAATGAGAATCGCGCGTCAAAGCTTAGATAATTGTTTTTGTCTTTATATACTTGCTCGCCAAGGAGTTGTCCCACAAAATGTGGGATCCGGATCCACTCTTAAATGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTACGAGCCCAATACTTTGGGCCACGAATTGATTCGTGATCTCATATCCGTTATCAGAGCTCGTGACTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCTTCGAAGGTGCGTCGAAGGTTGAACTTCGACAGCCCGTTTACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAACATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGAGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGTAAGATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTCCGTGATAGAAGGCCCTATGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGCACAGCTACGGTGAAGAATGATTTGAGAGACAGGTATCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGGCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGATTTTTTAAGATTAATAGTCATGTAACATATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACGGAGAATGCTTTGTTGTTGTATATGGCGTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGAATCTACTTCTACGATTCGATCGGTAATTAATAAATATTAAATTTTATTTCATGATTTTCTGATACTTGCAGAGTATTTTTCAATACATTATACAATACATGATAAACTGCTCTAATTACATCGTTAATTGAAATAACCCCTAATCTATCTAAATACTTGAGAACCTGAGTCCTAAATACCCTTAAGAAAAGACCAGTCTGAGGCTGTGAGCTCGTCCAGACCCTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAAGTTGTGGTTGAATCTTATCTGGACTGATATGATGTCGTGGGGCATGTTGAATGGTCGGTTCTCGTGGTCGATAATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAAAATCCATGGTCGATGCAGTTGATGTGGAGATAGTATGAGCAGCCGCAGTCGAGATCAATCCTTCTACGCCTCACTGCCCTCTTCTTGGCTATTCTGTGCTGGACTTTGATTGGTATTTGAGAACAGTGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTTAGTGCCCAGTCTTTTAGTGGTGCATTCTTTTCCTCGTCTAGGAACTCTTTATACGAGGAAGTTGGTCCTGGATTGCAAAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAGTGCTTCAAATAATGCGGGTCCACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCTGAGATCAAGATGACCACACAAGTAATTATGTGGACCCAATGATCTGGCCCACATTGTCTTCCCCGTCCGACTATCACCCTCAATCACAATGCTAATCGGTCTCCAAGGCCGCGCAGCGGAACCCATTACGTTCTCAGACACCCAGACTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGAAAGAAAAGGAGAAACATAAGGAGCCGGAGGCTCTTGAAAATCCTATCTAAATTACTATTTAAATTATGATACTGTAAAACAAAATCCTTTGGAGCTAACTCCCTAATGACTCTAAGAGCCTCTGACTTACTGCCTGAGTTAATAGCTTTGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCACTCAAGGGTGTCTCCGTCCTTGTCCAGATAGGACTTGACGTCAGAGCTGGACTTAGCTCCTTGTATGTTGGGGTGGAAACAGGTGCTACTGCTTGGGTGTACGCAATCGAAGAGGCGATTGTTGGTGCACGTGAGTTTTCCCTCGAATTGAATAAGGGCATGCAGATGAGGTTCCCCATTCTGGTGGTGTTCAAGGCAGATTTTAATATATTTAGGGTTAGTTGGAAGTGAGAGGTTTTGTAAGAATGATAGAAGGTGTTCTTTGCTAAGAGAACACTTTGGATAAGTGAGGAAAATGTTTTTGGCTTGAATTTTAAAACGTGGAGTTCTCATGTTGACTTGGTCAATTGGAGACACTCGGCTGTAACTCTCTCTAATGAATTGGAGACAATATATAGTGTCTCCAAATGGCATTTCTGTAATAAGCCTCATTGTAATTTGAATTTTGAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508191.1
Location 136-492
Gene Name v2
Protein Name V2 protein
Coding Region ATGTGGGATCCGGATCCACTCTTAAATGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTACGAGCCCAATACTTTGGGCCACGAATTGATTCGTGATCTCATATCCGTTATCAGAGCTCGTGACTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCTTCGAAGGTGCGTCGAAGGTTGAACTTCGACAGCCCGTTTACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPDPLLNEFPDSVHGFRCMLAIKYLQAIEQTYEPNTLGHELIRDLISVIRARDYVEATRRYNHFHARFEGASKVELRQPVYQPCCCPHCPRHKQTSVMDVQAHVSKAQDVQNVQKP

NCBI Accession YP_009508192.1
Location 302-1078
Gene Name cp
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCTTCGAAGGTGCGTCGAAGGTTGAACTTCGACAGCCCGTTTACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAACATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGAGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGTAAGATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTCCGTGATAGAAGGCCCTATGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGCACAGCTACGGTGAAGAATGATTTGAGAGACAGGTATCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGGCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGATTTTTTAAGATTAATAGTCATGTAACATATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACGGAGAATGCTTTGTTGTTGTATATGGCGTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGAATCTACTTCTACGATTCGATCGGTAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPFTSRAVVPIVPGTSRRRSWTYRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGAAPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN

NCBI Accession YP_009508193.1
Location 1075-1479
Gene Name c3
Protein Name C3 protein
Coding Region ATGGATTTTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATTATCGACCACGAGAACCGACCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTCACAGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAGGACTCAGGTTCTCAAGTATTTAGATAGATTAGGGGTTATTTCAATTAACGATGTAATTAGAGCAGTTTATCATGTATTGTATAATGTATTGAAAAATACTCTGCAAGTATCAGAAAATCATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDFRTGELITAAQAQSGVFIWEIQNPLYFKIIDHENRPFNMPHDIISVQIRFNHNLRKELGIHKCFLNFRVWTSSQPQTGLFLRVFRTQVLKYLDRLGVISINDVIRAVYHVLYNVLKNTLQVSENHEIKFNIY

NCBI Accession YP_009508194.1
Location 1220-1627
Gene Name c2
Protein Name C2 protein
Coding Region ATGCGACCTTCGTCACCCTCCACGAGCCACTGTTCTCAAATACCAATCAAAGTCCAGCACAGAATAGCCAAGAAGAGGGCAGTGAGGCGTAGAAGGATTGATCTCGACTGCGGCTGCTCATACTATCTCCACATCAACTGCATCGACCATGGATTTTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATTATCGACCACGAGAACCGACCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTCACAGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSTSHCSQIPIKVQHRIAKKRAVRRRRIDLDCGCSYYLHINCIDHGFSHRGTHHCSSSTEWRVYLGDTKSPVFQDYRPREPTIQHAPRHHISPDKIQPQLEEGTGDSQMFSQLQGLDELTASDWSFLKGI

NCBI Accession YP_009508195.1
Location 2155-2457
Gene Name c4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCATGCCCTTATTCAATTCGAGGGAAAACTCACGTGCACCAACAATCGCCTCTTCGATTGCGTACACCCAAGCAGTAGCACCTGTTTCCACCCCAACATACAAGGAGCTAAGTCCAGCTCTGACGTCAAGTCCTATCTGGACAAGGACGGAGACACCCTTGAGTGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCAAAGCTATTAACTCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAGGGAGTTAG
Protein Sequence MGNLICMPLFNSRENSRAPTIASSIAYTQAVAPVSTPTYKELSPALTSSPIWTRTETPLSGESFRSMDDLQEGDNNQPMTLTPKLLTQAVSQRLLESLGS

References More References in PubMed

1

A new betasatellite associated with cotton leaf curl Burewala virus infecting tomato in India: influence on symptoms and viral accumulation.

Kumar J, et al.  Arch Virol. 2013 Jun;158(6):1349-53. doi: 10.1007/s00705-013-1613-y. Epub 2013 Jan 30.

PMID: 23361863
2

Detection and characterization of a new betasatellite: variation in disease symptoms of tomato leaf curl Pakistan virus-India due to associated betasatellite.

Kumar J, et al.  Arch Virol. 2013 Jan;158(1):257-61. doi: 10.1007/s00705-012-1486-5. Epub 2012 Sep 29.

PMID: 23053516
3

Virus-induced gene silencing using a modified betasatellite: a potential candidate for functional genomics of crops.

Kumar J, et al.  Arch Virol. 2014 Aug;159(8):2109-13. doi: 10.1007/s00705-014-2039-x. Epub 2014 Mar 9.

PMID: 24610555
4

Molecular characterization and pathogenicity of a carrot (Daucus carota) infecting begomovirus and associated betasatellite from India.

Kumar J, et al.  Virus Res. 2013 Dec 26;178(2):478-485. doi: 10.1016/j.virusres.2013.10.010. Epub 2013 Oct 25.

PMID: 24512752