Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000841705.1 |
Isolate | Mali |
Release date | 2015/2/12 |
Submitter | Zhou,Y.C., Noussourou,M., Kon,T., Rojas,M.R., Jiang,H., Chen,L.F., Gamby,K., Foster,R., Gilbertson,R.L., Zhou,Y., Chen,L. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_958316.1 |
---|---|
Location | 138-488 |
Gene Name | V1 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCATTATTGAATGAATTCCCTGAATCAGTACATGGGTTTCGATGTATGCTGGCCATAAAATATTTGCAGGCCATAGAGGAAACATACGAGCCCAATACATTGGGTTACGATTTAATTCGTGATCTCATATCAGTAGTTAGGGCCTCCAACTATGTTGAAGCGACCCGCCGATATATTCATTTCCACTCCCGCCTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCATACTCCAGCCGTGCTGTTGTCCCCACTGTCCGAGGCACAAGCAAGCGTCAACTATGGACGTACCGGCCCATGTACCGAAAGCCCAAGTTTTACAAAATGTACAGAAGTCCTGA |
Protein Sequence | MWDPLLNEFPESVHGFRCMLAIKYLQAIEETYEPNTLGYDLIRDLISVVRASNYVEATRRYIHFHSRLEGSSKTELRQPILQPCCCPHCPRHKQASTMDVPAHVPKAQVLQNVQKS |
NCBI Accession | NP_958317.1 |
---|---|
Location | 298-1074 |
Gene Name | V2 |
Protein Name | coat protein |
Coding Region | ATGTTGAAGCGACCCGCCGATATATTCATTTCCACTCCCGCCTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCATACTCCAGCCGTGCTGTTGTCCCCACTGTCCGAGGCACAAGCAAGCGTCAACTATGGACGTACCGGCCCATGTACCGAAAGCCCAAGTTTTACAAAATGTACAGAAGTCCTGATGTACCACGGGGATGTGAAGGTCCATGTAAGATCCAGTCGTATGAGCAAAGGGATGACGTGAAGCATACCGGTATTGTACGTTGTGTTAGTGATATAACTCGTGGTCCTGGTTTGACTCATAGAACAGGGAAGAGATTCTGTATCAAGTCCATGTATATATTGGGTAAGATTTGGATGGATGAGAACATTAAGAAGACGAATCACACTAACAATGTCATGTTCTACTTGGTCCGTGATAGAAGGCCCTATGGAAAAAGCCCAATGGATTTTGGACAGGTTTTCAATATGTTTGACAATGAGCCCAGTACTGCCACTGTGAAGAATGATCTCCGTGATAGATATCAAGTACTTAGGAAGTTTCATGCTACCGTTACGGGTGGACCCTCTGGAGTGAAGGAACAGGCATTAGTGAAAAGATTTTATAGGCTTAATAGTCATGTAGTGTATAACCATCAGGAAGAGGCTAAATATGAGAATCATACAGAGAATGCGTTGTTATTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACCCTTAAAATACGCATCTATTTCTATGATGCAGTTACGAATTAA |
Protein Sequence | MLKRPADIFISTPASKVRRKLNFDSPYSSRAVVPTVRGTSKRQLWTYRPMYRKPKFYKMYRSPDVPRGCEGPCKIQSYEQRDDVKHTGIVRCVSDITRGPGLTHRTGKRFCIKSMYILGKIWMDENIKKTNHTNNVMFYLVRDRRPYGKSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVTGGPSGVKEQALVKRFYRLNSHVVYNHQEEAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN |
NCBI Accession | NP_958318.1 |
---|---|
Location | 1071-1475 |
Gene Name | C3 |
Protein Name | C3 protein |
Coding Region | ATGGATTTACGCACAGGGGAACACATCACTGCTCTTCAAGCTCAGAGTGGCGTGTTTATCTGGGAGCTCAACAATCCCCTATATTTCAAGATAATAAAACACATCAGCCGACCATTCAACAGGAACCACGACATGATATCAGACCAAATCAGGTTCAACCACAACCTCAGGAAAGAGTTGGGGATTCACAAGTGTTATCTGAACTTCCAGATCTGGACGACCTTACGGCCTCAGACTGGTCATTTCTTAAGGGTCTTTAAGACCCAAATAATTAAATATTTAGATAATTTGAATGTAATTTCTATTAATAATATCATTAGGGCAGTCAACCATGTATTGTACAATATTCTTGAAAACATTATTGATGTATCAGAAAATCATGAAATAAAATTTAATATTTATTAA |
Protein Sequence | MDLRTGEHITALQAQSGVFIWELNNPLYFKIIKHISRPFNRNHDMISDQIRFNHNLRKELGIHKCYLNFQIWTTLRPQTGHFLRVFKTQIIKYLDNLNVISINNIIRAVNHVLYNILENIIDVSENHEIKFNIY |
NCBI Accession | NP_958319.1 |
---|---|
Location | 1216-1623 |
Gene Name | C2 |
Protein Name | C2 protein |
Coding Region | ATGCGACCTTCGTCACCCTCACAGAGCCATTGTTCTCCAACGCCAATCAAGGTTCTCCACAAACAAGCCAAGAAGAAACCGATCAGGCGTAGACGAGTAGACCTCAACTGCGGGTGCTCATACTATCTACACATTAACTGCACCAACCATGGATTTACGCACAGGGGAACACATCACTGCTCTTCAAGCTCAGAGTGGCGTGTTTATCTGGGAGCTCAACAATCCCCTATATTTCAAGATAATAAAACACATCAGCCGACCATTCAACAGGAACCACGACATGATATCAGACCAAATCAGGTTCAACCACAACCTCAGGAAAGAGTTGGGGATTCACAAGTGTTATCTGAACTTCCAGATCTGGACGACCTTACGGCCTCAGACTGGTCATTTCTTAAGGGTCTTTAA |
Protein Sequence | MRPSSPSQSHCSPTPIKVLHKQAKKKPIRRRRVDLNCGCSYYLHINCTNHGFTHRGTHHCSSSSEWRVYLGAQQSPIFQDNKTHQPTIQQEPRHDIRPNQVQPQPQERVGDSQVLSELPDLDDLTASDWSFLKGL |
NCBI Accession | NP_958320.1 |
---|---|
Location | 1532-2611 |
Gene Name | C1 |
Protein Name | replication associated protein C1 |
Coding Region | ATGCCTAGAGCCGGTCGTTTTAGTATTAAAGCCAAGAATTACTTCCTCACTTATCCCCAATGCTCTCTTACTAAAAAAGAGGCACTTTCTCAATTACAGAACCTACAGACTCCCACAAATAAAAAATTCATTAAAATCTGTAGAGAACTCCACGAAGATGGGGAACATCATCTCCACGTGCTTATCCAATTCGAGGGTAAATACAACTGCACAAATCAACGATTCTTCGACCTGGTATCCCCAACCCGGTCAGCACATTTCCATCCGAATGTACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAAATTGACGGCAGATCTGCTAGAGGAGGCTGCCAAACAGCTAACGACGCAGCCGCCGAGGCATTAAATGCAGGTTCAACTGAAGCTGCTTTAGCTATAATTAAAGAAAAACTCCCAAAAGATTATATATTTCAATATCATAATTTAAAATCCAATTTAGATAGAATCTTCCAGGAACCTCCTGAAGTATATGTATCCCCTTTTTCTTCTTCTTCTTTTACTCAAGTTCCAGACGAACTTGAAGAGTGGGTGGCAGATAATATAAGAGATTCCGCTGCGCGGCCATGGAGACCCAAGAGTATAGTCTTAGAGGGTGACAGTCGGACCGGCAAAACTGTATGGGCCCGTTCTCTGGGTCCACATAATTATTTATGTGGGCACCTAGACTTAAGCCCAAAGGTGTACTCCAATAACGCATGGTATAACGTCATTGATGATGTCGACCCACATTATTTAAAGCATTTTAAAGAGCTGATGGGGGCCCAAAGAGACTGGCAAAGCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCCAGTATTTTCCTCTGCAATCCAGGGGCAACTTCATCATATAAGGAATTTCTAGACGAGGAAAAAAACAGAGCACTGAAGGCTTGGGCAGTAAAAAATGCGACCTTCGTCACCCTCACAGAGCCATTGTTCTCCAACGCCAATCAAGGTTCTCCACAAACAAGCCAAGAAGAAACCGATCAGGCGTAG |
Protein Sequence | MPRAGRFSIKAKNYFLTYPQCSLTKKEALSQLQNLQTPTNKKFIKICRELHEDGEHHLHVLIQFEGKYNCTNQRFFDLVSPTRSAHFHPNVQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQTANDAAAEALNAGSTEAALAIIKEKLPKDYIFQYHNLKSNLDRIFQEPPEVYVSPFSSSSFTQVPDELEEWVADNIRDSAARPWRPKSIVLEGDSRTGKTVWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPVQIKGGIPSIFLCNPGATSSYKEFLDEEKNRALKAWAVKNATFVTLTEPLFSNANQGSPQTSQEETDQA |
NCBI Accession | NP_958321.1 |
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Location | 2197-2454 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGGAACATCATCTCCACGTGCTTATCCAATTCGAGGGTAAATACAACTGCACAAATCAACGATTCTTCGACCTGGTATCCCCAACCCGGTCAGCACATTTCCATCCGAATGTACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAAATTGACGGCAGATCTGCTAGAGGAGGCTGCCAAACAGCTAACGACGCAGCCGCCGAGGCATTAA |
Protein Sequence | MGNIISTCLSNSRVNTTAQINDSSTWYPQPGQHISIRMYRELNPAPTSSPISIRTETLSNGENSKLTADLLEEAAKQLTTQPPRH |
1 |
Ouattara A, et al. Arch Virol. 2017 May;162(5):1427-1429. doi: 10.1007/s00705-017-3231-6. Epub 2017 Feb 4. PMID: 28161765 |
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2 |
Díaz-Pendón JA, et al. Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x. PMID: 20618703 |
3 |
Chen LF, et al. Mol Plant Pathol. 2009 May;10(3):415-30. doi: 10.1111/j.1364-3703.2009.00541.x. PMID: 19400843 |
4 |
Zhou YC, et al. Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16. PMID: 18278427 |
5 |
Kon T, et al. J Gen Virol. 2009 Apr;90(Pt 4):1001-1013. doi: 10.1099/vir.0.008102-0. Epub 2009 Mar 4. PMID: 19264648 |
6 |
First Report of a Begomovirus Associated with Tomato Yellow Leaf Curl Disease in Ethiopia. Shih SL, et al. Plant Dis. 2006 Jul;90(7):974. doi: 10.1094/PD-90-0974A. PMID: 30781051 |
7 |
Lett JM, et al. Arch Virol. 2009;154(3):535-40. doi: 10.1007/s00705-009-0313-0. Epub 2009 Feb 3. PMID: 19189198 |
8 |
Osei MK, et al. Plant Dis. 2008 Nov;92(11):1585. doi: 10.1094/PDIS-92-11-1585B. PMID: 30764452 |
9 |
Afouda L, et al. Arch Virol. 2017 Jun;162(6):1599-1607. doi: 10.1007/s00705-017-3274-8. Epub 2017 Feb 20. PMID: 28220324 |