Tomato leaf curl Mali virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841705.1
Isolate Mali
Release date 2015/2/12
Submitter Zhou,Y.C., Noussourou,M., Kon,T., Rojas,M.R., Jiang,H., Chen,L.F., Gamby,K., Foster,R., Gilbertson,R.L., Zhou,Y., Chen,L.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_005348
ACAGGATGGCCGCGCCCGAAAAAGAAAGTGGTCCCTCCTCACTAATTTATGTCGGCCAATCAGAATGTCAGTGAAAACGTTAGATAAGTAGTGTTTTGTCTTATATACTTTGGTCCCAAGTATGTTACAGTTGCACTATGTGGGATCCATTATTGAATGAATTCCCTGAATCAGTACATGGGTTTCGATGTATGCTGGCCATAAAATATTTGCAGGCCATAGAGGAAACATACGAGCCCAATACATTGGGTTACGATTTAATTCGTGATCTCATATCAGTAGTTAGGGCCTCCAACTATGTTGAAGCGACCCGCCGATATATTCATTTCCACTCCCGCCTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCATACTCCAGCCGTGCTGTTGTCCCCACTGTCCGAGGCACAAGCAAGCGTCAACTATGGACGTACCGGCCCATGTACCGAAAGCCCAAGTTTTACAAAATGTACAGAAGTCCTGATGTACCACGGGGATGTGAAGGTCCATGTAAGATCCAGTCGTATGAGCAAAGGGATGACGTGAAGCATACCGGTATTGTACGTTGTGTTAGTGATATAACTCGTGGTCCTGGTTTGACTCATAGAACAGGGAAGAGATTCTGTATCAAGTCCATGTATATATTGGGTAAGATTTGGATGGATGAGAACATTAAGAAGACGAATCACACTAACAATGTCATGTTCTACTTGGTCCGTGATAGAAGGCCCTATGGAAAAAGCCCAATGGATTTTGGACAGGTTTTCAATATGTTTGACAATGAGCCCAGTACTGCCACTGTGAAGAATGATCTCCGTGATAGATATCAAGTACTTAGGAAGTTTCATGCTACCGTTACGGGTGGACCCTCTGGAGTGAAGGAACAGGCATTAGTGAAAAGATTTTATAGGCTTAATAGTCATGTAGTGTATAACCATCAGGAAGAGGCTAAATATGAGAATCATACAGAGAATGCGTTGTTATTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACCCTTAAAATACGCATCTATTTCTATGATGCAGTTACGAATTAATAAATATTAAATTTTATTTCATGATTTTCTGATACATCAATAATGTTTTCAAGAATATTGTACAATACATGGTTGACTGCCCTAATGATATTATTAATAGAAATTACATTCAAATTATCTAAATATTTAATTATTTGGGTCTTAAAGACCCTTAAGAAATGACCAGTCTGAGGCCGTAAGGTCGTCCAGATCTGGAAGTTCAGATAACACTTGTGAATCCCCAACTCTTTCCTGAGGTTGTGGTTGAACCTGATTTGGTCTGATATCATGTCGTGGTTCCTGTTGAATGGTCGGCTGATGTGTTTTATTATCTTGAAATATAGGGGATTGTTGAGCTCCCAGATAAACACGCCACTCTGAGCTTGAAGAGCAGTGATGTGTTCCCCTGTGCGTAAATCCATGGTTGGTGCAGTTAATGTGTAGATAGTATGAGCACCCGCAGTTGAGGTCTACTCGTCTACGCCTGATCGGTTTCTTCTTGGCTTGTTTGTGGAGAACCTTGATTGGCGTTGGAGAACAATGGCTCTGTGAGGGTGACGAAGGTCGCATTTTTTACTGCCCAAGCCTTCAGTGCTCTGTTTTTTTCCTCGTCTAGAAATTCCTTATATGATGAAGTTGCCCCTGGATTGCAGAGGAAAATACTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATCAGCTCTTTAAAATGCTTTAAATAATGTGGGTCGACATCATCAATGACGTTATACCATGCGTTATTGGAGTACACCTTTGGGCTTAAGTCTAGGTGCCCACATAAATAATTATGTGGACCCAGAGAACGGGCCCATACAGTTTTGCCGGTCCGACTGTCACCCTCTAAGACTATACTCTTGGGTCTCCATGGCCGCGCAGCGGAATCTCTTATATTATCTGCCACCCACTCTTCAAGTTCGTCTGGAACTTGAGTAAAAGAAGAAGAAGAAAAAGGGGATACATATACTTCAGGAGGTTCCTGGAAGATTCTATCTAAATTGGATTTTAAATTATGATATTGAAATATATAATCTTTTGGGAGTTTTTCTTTAATTATAGCTAAAGCAGCTTCAGTTGAACCTGCATTTAATGCCTCGGCGGCTGCGTCGTTAGCTGTTTGGCAGCCTCCTCTAGCAGATCTGCCGTCAATTTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTATCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTACATTCGGATGGAAATGTGCTGACCGGGTTGGGGATACCAGGTCGAAGAATCGTTGATTTGTGCAGTTGTATTTACCCTCGAATTGGATAAGCACGTGGAGATGATGTTCCCCATCTTCGTGGAGTTCTCTACAGATTTTAATGAATTTTTTATTTGTGGGAGTCTGTAGGTTCTGTAATTGAGAAAGTGCCTCTTTTTTAGTAAGAGAGCATTGGGGATAAGTGAGGAAGTAATTCTTGGCTTTAATACTAAAACGACCGGCTCTAGGCATAGTGATAAATGAATTGGGGGGCACTAAAAGTCATATGAATTGGGGGAACTGGGGGGCAATTTATATGTGCCCCCCAAATGGCATAACTGTAATATCGTAAACCTTTAAGTCTCATTAGAAATCCAAATTCCATTTAAATCTAGCGGCCATCCTTCTAATATT

Gene Information

NCBI Accession NP_958316.1
Location 138-488
Gene Name V1
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTATTGAATGAATTCCCTGAATCAGTACATGGGTTTCGATGTATGCTGGCCATAAAATATTTGCAGGCCATAGAGGAAACATACGAGCCCAATACATTGGGTTACGATTTAATTCGTGATCTCATATCAGTAGTTAGGGCCTCCAACTATGTTGAAGCGACCCGCCGATATATTCATTTCCACTCCCGCCTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCATACTCCAGCCGTGCTGTTGTCCCCACTGTCCGAGGCACAAGCAAGCGTCAACTATGGACGTACCGGCCCATGTACCGAAAGCCCAAGTTTTACAAAATGTACAGAAGTCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAIKYLQAIEETYEPNTLGYDLIRDLISVVRASNYVEATRRYIHFHSRLEGSSKTELRQPILQPCCCPHCPRHKQASTMDVPAHVPKAQVLQNVQKS

NCBI Accession NP_958317.1
Location 298-1074
Gene Name V2
Protein Name coat protein
Coding Region ATGTTGAAGCGACCCGCCGATATATTCATTTCCACTCCCGCCTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCATACTCCAGCCGTGCTGTTGTCCCCACTGTCCGAGGCACAAGCAAGCGTCAACTATGGACGTACCGGCCCATGTACCGAAAGCCCAAGTTTTACAAAATGTACAGAAGTCCTGATGTACCACGGGGATGTGAAGGTCCATGTAAGATCCAGTCGTATGAGCAAAGGGATGACGTGAAGCATACCGGTATTGTACGTTGTGTTAGTGATATAACTCGTGGTCCTGGTTTGACTCATAGAACAGGGAAGAGATTCTGTATCAAGTCCATGTATATATTGGGTAAGATTTGGATGGATGAGAACATTAAGAAGACGAATCACACTAACAATGTCATGTTCTACTTGGTCCGTGATAGAAGGCCCTATGGAAAAAGCCCAATGGATTTTGGACAGGTTTTCAATATGTTTGACAATGAGCCCAGTACTGCCACTGTGAAGAATGATCTCCGTGATAGATATCAAGTACTTAGGAAGTTTCATGCTACCGTTACGGGTGGACCCTCTGGAGTGAAGGAACAGGCATTAGTGAAAAGATTTTATAGGCTTAATAGTCATGTAGTGTATAACCATCAGGAAGAGGCTAAATATGAGAATCATACAGAGAATGCGTTGTTATTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACCCTTAAAATACGCATCTATTTCTATGATGCAGTTACGAATTAA
Protein Sequence MLKRPADIFISTPASKVRRKLNFDSPYSSRAVVPTVRGTSKRQLWTYRPMYRKPKFYKMYRSPDVPRGCEGPCKIQSYEQRDDVKHTGIVRCVSDITRGPGLTHRTGKRFCIKSMYILGKIWMDENIKKTNHTNNVMFYLVRDRRPYGKSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVTGGPSGVKEQALVKRFYRLNSHVVYNHQEEAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession NP_958318.1
Location 1071-1475
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAACACATCACTGCTCTTCAAGCTCAGAGTGGCGTGTTTATCTGGGAGCTCAACAATCCCCTATATTTCAAGATAATAAAACACATCAGCCGACCATTCAACAGGAACCACGACATGATATCAGACCAAATCAGGTTCAACCACAACCTCAGGAAAGAGTTGGGGATTCACAAGTGTTATCTGAACTTCCAGATCTGGACGACCTTACGGCCTCAGACTGGTCATTTCTTAAGGGTCTTTAAGACCCAAATAATTAAATATTTAGATAATTTGAATGTAATTTCTATTAATAATATCATTAGGGCAGTCAACCATGTATTGTACAATATTCTTGAAAACATTATTGATGTATCAGAAAATCATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDLRTGEHITALQAQSGVFIWELNNPLYFKIIKHISRPFNRNHDMISDQIRFNHNLRKELGIHKCYLNFQIWTTLRPQTGHFLRVFKTQIIKYLDNLNVISINNIIRAVNHVLYNILENIIDVSENHEIKFNIY

NCBI Accession NP_958319.1
Location 1216-1623
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGACCTTCGTCACCCTCACAGAGCCATTGTTCTCCAACGCCAATCAAGGTTCTCCACAAACAAGCCAAGAAGAAACCGATCAGGCGTAGACGAGTAGACCTCAACTGCGGGTGCTCATACTATCTACACATTAACTGCACCAACCATGGATTTACGCACAGGGGAACACATCACTGCTCTTCAAGCTCAGAGTGGCGTGTTTATCTGGGAGCTCAACAATCCCCTATATTTCAAGATAATAAAACACATCAGCCGACCATTCAACAGGAACCACGACATGATATCAGACCAAATCAGGTTCAACCACAACCTCAGGAAAGAGTTGGGGATTCACAAGTGTTATCTGAACTTCCAGATCTGGACGACCTTACGGCCTCAGACTGGTCATTTCTTAAGGGTCTTTAA
Protein Sequence MRPSSPSQSHCSPTPIKVLHKQAKKKPIRRRRVDLNCGCSYYLHINCTNHGFTHRGTHHCSSSSEWRVYLGAQQSPIFQDNKTHQPTIQQEPRHDIRPNQVQPQPQERVGDSQVLSELPDLDDLTASDWSFLKGL

NCBI Accession NP_958320.1
Location 1532-2611
Gene Name C1
Protein Name replication associated protein C1
Coding Region ATGCCTAGAGCCGGTCGTTTTAGTATTAAAGCCAAGAATTACTTCCTCACTTATCCCCAATGCTCTCTTACTAAAAAAGAGGCACTTTCTCAATTACAGAACCTACAGACTCCCACAAATAAAAAATTCATTAAAATCTGTAGAGAACTCCACGAAGATGGGGAACATCATCTCCACGTGCTTATCCAATTCGAGGGTAAATACAACTGCACAAATCAACGATTCTTCGACCTGGTATCCCCAACCCGGTCAGCACATTTCCATCCGAATGTACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAAATTGACGGCAGATCTGCTAGAGGAGGCTGCCAAACAGCTAACGACGCAGCCGCCGAGGCATTAAATGCAGGTTCAACTGAAGCTGCTTTAGCTATAATTAAAGAAAAACTCCCAAAAGATTATATATTTCAATATCATAATTTAAAATCCAATTTAGATAGAATCTTCCAGGAACCTCCTGAAGTATATGTATCCCCTTTTTCTTCTTCTTCTTTTACTCAAGTTCCAGACGAACTTGAAGAGTGGGTGGCAGATAATATAAGAGATTCCGCTGCGCGGCCATGGAGACCCAAGAGTATAGTCTTAGAGGGTGACAGTCGGACCGGCAAAACTGTATGGGCCCGTTCTCTGGGTCCACATAATTATTTATGTGGGCACCTAGACTTAAGCCCAAAGGTGTACTCCAATAACGCATGGTATAACGTCATTGATGATGTCGACCCACATTATTTAAAGCATTTTAAAGAGCTGATGGGGGCCCAAAGAGACTGGCAAAGCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCCAGTATTTTCCTCTGCAATCCAGGGGCAACTTCATCATATAAGGAATTTCTAGACGAGGAAAAAAACAGAGCACTGAAGGCTTGGGCAGTAAAAAATGCGACCTTCGTCACCCTCACAGAGCCATTGTTCTCCAACGCCAATCAAGGTTCTCCACAAACAAGCCAAGAAGAAACCGATCAGGCGTAG
Protein Sequence MPRAGRFSIKAKNYFLTYPQCSLTKKEALSQLQNLQTPTNKKFIKICRELHEDGEHHLHVLIQFEGKYNCTNQRFFDLVSPTRSAHFHPNVQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQTANDAAAEALNAGSTEAALAIIKEKLPKDYIFQYHNLKSNLDRIFQEPPEVYVSPFSSSSFTQVPDELEEWVADNIRDSAARPWRPKSIVLEGDSRTGKTVWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKELMGAQRDWQSNTKYGKPVQIKGGIPSIFLCNPGATSSYKEFLDEEKNRALKAWAVKNATFVTLTEPLFSNANQGSPQTSQEETDQA

NCBI Accession NP_958321.1
Location 2197-2454
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACATCATCTCCACGTGCTTATCCAATTCGAGGGTAAATACAACTGCACAAATCAACGATTCTTCGACCTGGTATCCCCAACCCGGTCAGCACATTTCCATCCGAATGTACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACTCTCGAATGGGGAGAATTCCAAATTGACGGCAGATCTGCTAGAGGAGGCTGCCAAACAGCTAACGACGCAGCCGCCGAGGCATTAA
Protein Sequence MGNIISTCLSNSRVNTTAQINDSSTWYPQPGQHISIRMYRELNPAPTSSPISIRTETLSNGENSKLTADLLEEAAKQLTTQPPRH

References More References in PubMed

1

Tomato yellow leaf curl viruses: menage a trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
2

Tomato leaf curl Burkina Faso virus: a novel tomato-infecting monopartite begomovirus from Burkina Faso.

Ouattara A, et al.  Arch Virol. 2017 May;162(5):1427-1429. doi: 10.1007/s00705-017-3231-6. Epub 2017 Feb 4.

PMID: 28161765
3

Evidence of local evolution of tomato-infecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali.

Zhou YC, et al.  Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16.

PMID: 18278427
4

A severe symptom phenotype in tomato in Mali is caused by a reassortant between a novel recombinant begomovirus (Tomato yellow leaf curl Mali virus) and a betasatellite.

Chen LF, et al.  Mol Plant Pathol. 2009 May;10(3):415-30. doi: 10.1111/j.1364-3703.2009.00541.x.

PMID: 19400843
5

First Report of a Begomovirus Associated with Tomato Yellow Leaf Curl Disease in Ethiopia.

Shih SL, et al.  Plant Dis. 2006 Jul;90(7):974. doi: 10.1094/PD-90-0974A.

PMID: 30781051
6

First Report and Molecular Characterization of DNA A of Three Distinct Begomoviruses Associated with Tomato Leaf Curl Disease in Ghana.

Osei MK, et al.  Plant Dis. 2008 Nov;92(11):1585. doi: 10.1094/PDIS-92-11-1585B.

PMID: 30764452
7

Complete genomic sequences of Tomato yellow leaf curl Mali virus isolates infecting tomato and pepper from the North Province of Cameroon.

Lett JM, et al.  Arch Virol. 2009;154(3):535-40. doi: 10.1007/s00705-009-0313-0. Epub 2009 Feb 3.

PMID: 19189198
8

Roles and interactions of begomoviruses and satellite DNAs associated with okra leaf curl disease in Mali, West Africa.

Kon T, et al.  J Gen Virol. 2009 Apr;90(Pt 4):1001-1013. doi: 10.1099/vir.0.008102-0. Epub 2009 Mar 4.

PMID: 19264648
9

A new monopartite begomovirus infecting Melochia tomentosa in Burkina Faso.

Ouattara A, et al.  Arch Virol. 2024 Nov 7;169(12):240. doi: 10.1007/s00705-024-06167-4.

PMID: 39510996
10

Insights into Novel Viral Threats in Sweetpotato from Burkina Faso: Characterisation of Unexplored Pathogens.

Name PE, et al.  Viruses. 2025 Sep 7;17(9):1222. doi: 10.3390/v17091222.

PMID: 41012650