Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000843005.1 |
Isolate | Malaysia: Klang |
Release date | 2015/2/12 |
Submitter | Shih,S.L., Roff,M.M.N., Nakhla,M.K., Maxwell,D.P., Green,S.K. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_808828.1 |
---|---|
Location | 124-483 |
Gene Name | V2 |
Protein Name | pre-coat protein |
Coding Region | ATGACAAATATGTGGGATCCACTTTTGAATGAGTTTCCGGAGACTGTTCATGGTCTACGGTGTATGTTAGCTAAGAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGATTGGGTACGATTTGTTCTGTGATCTCATCAATCTTCTCAACACAAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA |
Protein Sequence | MTNMWDPLLNEFPETVHGLRCMLAKKYVQEVQKTYSPDTIGYDLFCDLINLLNTKNYEQASSRYSHFYARLQGTPPSELRHPIFQPCCCPHCPRHKQKASMDTEAHVSEAQNVQNVQKP |
NCBI Accession | NP_808829.1 |
---|---|
Location | 293-1066 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCCAAAGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGACATGATATATCTCATGTGGGTAAGGTTTTATGTGTTAGTGACGTTACTCGTGGTAATGGGTTTACCCATCGTGTGGGCAAGAGATTTTGTGTGAAGTCCATTTACGTTTTGGGTAAAATATGGATGGACGAGAATATCAAGACGAAGAATCACACCAACACTGTGATGTTCTTCCTTGTTCGTGATAGAAGGCCCTTTGGCACTGCGATGGATTTTGGACAGGTTTTTAACATGTATGACAACGAGCCTAGTACTGCAACTGTGAAGAACGATATGCGAGATCGATATCAGGTGTTGAGGAAATTCACTGCAACCGTTACGGGTGGACAATATGCCTCTAAGGAACAGGCGTTGGTTAGGAAGTTTATGAAGGTCAATAATTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAACGCTCTTTTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA |
Protein Sequence | MSKRPADIVISTPVSKVRRRLNFDTPYSSRAVAPTVLVTNKRRAWTQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGFTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRYQVLRKFTATVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession | NP_808830.1 |
---|---|
Location | 1063-1467 |
Gene Name | C3 |
Protein Name | C3 protein |
Coding Region | ATGGATTTTCGCACAGGGGAATTACTCACTGTAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAAAAATCCCCTCTATTTCAAGATAACCCAGCACCACGAGAGGCCATTCCTGAGGAACCACGACATCGTAACCATACAAGTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCTTCAGACTTGGCGTTTCTTAAGAGTATTTAAATATCAATGCATGAGGTACTTAAATAGGTTAGGAGTTATTAGTATTAACAATGTAATTAGGGCAATGTCCCATGTGGTGTATGATGTATTTGAGGGCACAATTGATGCTCAATTTTCTCATAGAATAAAATTTAATATTTATTAA |
Protein Sequence | MDFRTGELLTVTQCESGVYTWTIKNPLYFKITQHHERPFLRNHDIVTIQVQFNHNLRKALGIHQCFLTCQIWTRLHLQTWRFLRVFKYQCMRYLNRLGVISINNVIRAMSHVVYDVFEGTIDAQFSHRIKFNIY |
NCBI Accession | NP_808831.1 |
---|---|
Location | 1208-1615 |
Gene Name | C2 |
Protein Name | C2 protein |
Coding Region | ATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAGCCAGTTCGCAGGCGGAGAGTTGATCTAACGTGTGGGTGTTCCTACTACTTCAGCATAAATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGTAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAAAAATCCCCTCTATTTCAAGATAACCCAGCACCACGAGAGGCCATTCCTGAGGAACCACGACATCGTAACCATACAAGTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCTTCAGACTTGGCGTTTCTTAAGAGTATTTAA |
Protein Sequence | MQNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYFSINCANHGFSHRGITHCNSMREWRVYLDDQKSPLFQDNPAPREAIPEEPRHRNHTSAVQPQPEESVGDTPMFSNLPNLDSFTSSDLAFLKSI |
NCBI Accession | NP_808832.1 |
---|---|
Location | 1515-2603 |
Gene Name | C1 |
Protein Name | replication-associated protein |
Coding Region | ATGGCTCCTCCAAGACCATTTAAAATAAATGCCAAAAATTACTTCCTCACATACCCACAGTGCTCTCTCACTAAGGAAGATGCACTTTCCCAATTACAAAACCTAAACACCCCAACCAACAAGAAATATATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCACAGGCACTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAATTAAGGAGTTAGCTCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTGTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTCGATCAAGTTCCCGAAGAACTTGAAGAGTGGGTTTCTAAGAACGTCAGGGATGCCGCTGCGCGGCCTTGGAGACCCAATAGTATTGTCATAGAGGGAGAGAGTCGTACAGGAAAGACAATGTGGGCCCGTTCGTTGGGCCCACATAATTATCTGTGCGGTCATCTAGATCTGAGTCCAAAGGTGTACAGCAATGACGCGTGGTATAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAGTACGGGAAGCCAATTCAAATTAAAGGTGGCATCCCAACTATCTTCCTCTGCAATCCAGGCCCAACGTCATCATATAAAGAGTACTTGGATGAGGAAAAGAATTCAGCATTAAAAGAGTGGGCATTAAAGAATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAGCCAGTTCGCAGGCGGAGAGTTGA |
Protein Sequence | MAPPRPFKINAKNYFLTYPQCSLTKEDALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLDWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDFVLQFHNLNSNLDRIFAPPVEVFVCPFLSSSFDQVPEELEEWVSKNVRDAAARPWRPNSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWALKNAEFITLNSPLYSGTNQSATQNSQEEASSQAES |
NCBI Accession | NP_808833.1 |
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Location | 2156-2446 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCACAGGCACTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAA |
Protein Sequence | MGALISTCLSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNPAPTSSPTSTRTETPSIGESFRSTEDLQEGVNRQPMTLTHRHLTAAVSQRLLM |
1 |
Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China. Li R, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print. PMID: 36281022 |
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2 |
Development of a New Molecular Marker for the Resistance to Tomato Yellow Leaf Curl Virus. Nevame AYM, et al. Biomed Res Int. 2018 Jul 17;2018:8120281. doi: 10.1155/2018/8120281. eCollection 2018. PMID: 30105248 |
3 |
Mahmoudieh M, et al. J Appl Genet. 2020 Dec;61(4):619-628. doi: 10.1007/s13353-020-00574-4. Epub 2020 Aug 17. PMID: 32808206 |
4 |
Chen YJ, et al. Plants (Basel). 2021 Nov 6;10(11):2396. doi: 10.3390/plants10112396. PMID: 34834759 |
5 |
Green SK, et al. Plant Dis. 2001 Dec;85(12):1286. doi: 10.1094/PDIS.2001.85.12.1286A. PMID: 30831796 |