Tomato leaf curl Malaysia virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000843005.1
Isolate Malaysia: Klang
Release date 2015/2/12
Submitter Shih,S.L., Roff,M.M.N., Nakhla,M.K., Maxwell,D.P., Green,S.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004648
ACCGGATGGCCGCGATTTTGGAAAAAGTGGGCCCCGCCACTAACAAATGTCCGCCACTAAGAACGCTCCCTCAGAGTCTATTTAGTGTGTGGGCCCCTATTTATATCTTGGTGGCCAAGTTTTATGACAAATATGTGGGATCCACTTTTGAATGAGTTTCCGGAGACTGTTCATGGTCTACGGTGTATGTTAGCTAAGAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGATTGGGTACGATTTGTTCTGTGATCTCATCAATCTTCTCAACACAAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCCAAAGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGACATGATATATCTCATGTGGGTAAGGTTTTATGTGTTAGTGACGTTACTCGTGGTAATGGGTTTACCCATCGTGTGGGCAAGAGATTTTGTGTGAAGTCCATTTACGTTTTGGGTAAAATATGGATGGACGAGAATATCAAGACGAAGAATCACACCAACACTGTGATGTTCTTCCTTGTTCGTGATAGAAGGCCCTTTGGCACTGCGATGGATTTTGGACAGGTTTTTAACATGTATGACAACGAGCCTAGTACTGCAACTGTGAAGAACGATATGCGAGATCGATATCAGGTGTTGAGGAAATTCACTGCAACCGTTACGGGTGGACAATATGCCTCTAAGGAACAGGCGTTGGTTAGGAAGTTTATGAAGGTCAATAATTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAACGCTCTTTTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAATATTAAATTTTATTCTATGAGAAAATTGAGCATCAATTGTGCCCTCAAATACATCATACACCACATGGGACATTGCCCTAATTACATTGTTAATACTAATAACTCCTAACCTATTTAAGTACCTCATGCATTGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAAGATGTAAACGAGTCCAGATTTGGCAGGTTAGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGCACTTGTATGGTTACGATGTCGTGGTTCCTCAGGAATGGCCTCTCGTGGTGCTGGGTTATCTTGAAATAGAGGGGATTTTTGATCGTCCAAGTATACACGCCACTCTCGCATTGAGTTACAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATTTATGCTGAAGTAGTAGGAACACCCACACGTTAGATCAACTCTCCGCCTGCGAACTGGCTTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTACTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTTAATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCACGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAACGAACGGGCCCACATTGTCTTTCCTGTACGACTCTCTCCCTCTATGACAATACTATTGGGTCTCCAAGGCCGCGCAGCGGCATCCCTGACGTTCTTAGAAACCCACTCTTCAAGTTCTTCGGGAACTTGATCGAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTACAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAACTCCTTAATTACATTAAGAGCCTCTGACTTACTGCCGCTGTTAAGTGCCTGTGCGTAAGCGTCATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATATATTTCTTGTTGGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCATCTTCCTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAGTAATTTTTGGCATTTATTTTAAATGGTCTTGGAGGAGCCATTGACTTGGTCAATCGGTGTCTCTACTAATTCTCTATCAATCGGTGTACTGGAGTCCTATATATAGTTAGACCCCAAATGGCATTGTCGTAATTCCCAAAGGAAATTCAAAATTCAAATTCAAATTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_808828.1
Location 124-483
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGACAAATATGTGGGATCCACTTTTGAATGAGTTTCCGGAGACTGTTCATGGTCTACGGTGTATGTTAGCTAAGAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGATTGGGTACGATTTGTTCTGTGATCTCATCAATCTTCTCAACACAAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MTNMWDPLLNEFPETVHGLRCMLAKKYVQEVQKTYSPDTIGYDLFCDLINLLNTKNYEQASSRYSHFYARLQGTPPSELRHPIFQPCCCPHCPRHKQKASMDTEAHVSEAQNVQNVQKP

NCBI Accession NP_808829.1
Location 293-1066
Gene Name V1
Protein Name coat protein
Coding Region ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCCAAAGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGACATGATATATCTCATGTGGGTAAGGTTTTATGTGTTAGTGACGTTACTCGTGGTAATGGGTTTACCCATCGTGTGGGCAAGAGATTTTGTGTGAAGTCCATTTACGTTTTGGGTAAAATATGGATGGACGAGAATATCAAGACGAAGAATCACACCAACACTGTGATGTTCTTCCTTGTTCGTGATAGAAGGCCCTTTGGCACTGCGATGGATTTTGGACAGGTTTTTAACATGTATGACAACGAGCCTAGTACTGCAACTGTGAAGAACGATATGCGAGATCGATATCAGGTGTTGAGGAAATTCACTGCAACCGTTACGGGTGGACAATATGCCTCTAAGGAACAGGCGTTGGTTAGGAAGTTTATGAAGGTCAATAATTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAACGCTCTTTTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPVSKVRRRLNFDTPYSSRAVAPTVLVTNKRRAWTQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGFTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRYQVLRKFTATVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_808830.1
Location 1063-1467
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTTCGCACAGGGGAATTACTCACTGTAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAAAAATCCCCTCTATTTCAAGATAACCCAGCACCACGAGAGGCCATTCCTGAGGAACCACGACATCGTAACCATACAAGTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCTTCAGACTTGGCGTTTCTTAAGAGTATTTAAATATCAATGCATGAGGTACTTAAATAGGTTAGGAGTTATTAGTATTAACAATGTAATTAGGGCAATGTCCCATGTGGTGTATGATGTATTTGAGGGCACAATTGATGCTCAATTTTCTCATAGAATAAAATTTAATATTTATTAA
Protein Sequence MDFRTGELLTVTQCESGVYTWTIKNPLYFKITQHHERPFLRNHDIVTIQVQFNHNLRKALGIHQCFLTCQIWTRLHLQTWRFLRVFKYQCMRYLNRLGVISINNVIRAMSHVVYDVFEGTIDAQFSHRIKFNIY

NCBI Accession NP_808831.1
Location 1208-1615
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAGCCAGTTCGCAGGCGGAGAGTTGATCTAACGTGTGGGTGTTCCTACTACTTCAGCATAAATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGTAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAAAAATCCCCTCTATTTCAAGATAACCCAGCACCACGAGAGGCCATTCCTGAGGAACCACGACATCGTAACCATACAAGTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCTTCAGACTTGGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYFSINCANHGFSHRGITHCNSMREWRVYLDDQKSPLFQDNPAPREAIPEEPRHRNHTSAVQPQPEESVGDTPMFSNLPNLDSFTSSDLAFLKSI

NCBI Accession NP_808832.1
Location 1515-2603
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCTCCTCCAAGACCATTTAAAATAAATGCCAAAAATTACTTCCTCACATACCCACAGTGCTCTCTCACTAAGGAAGATGCACTTTCCCAATTACAAAACCTAAACACCCCAACCAACAAGAAATATATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCACAGGCACTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAATTAAGGAGTTAGCTCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTGTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTCGATCAAGTTCCCGAAGAACTTGAAGAGTGGGTTTCTAAGAACGTCAGGGATGCCGCTGCGCGGCCTTGGAGACCCAATAGTATTGTCATAGAGGGAGAGAGTCGTACAGGAAAGACAATGTGGGCCCGTTCGTTGGGCCCACATAATTATCTGTGCGGTCATCTAGATCTGAGTCCAAAGGTGTACAGCAATGACGCGTGGTATAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAGTACGGGAAGCCAATTCAAATTAAAGGTGGCATCCCAACTATCTTCCTCTGCAATCCAGGCCCAACGTCATCATATAAAGAGTACTTGGATGAGGAAAAGAATTCAGCATTAAAAGAGTGGGCATTAAAGAATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAGCCAGTTCGCAGGCGGAGAGTTGA
Protein Sequence MAPPRPFKINAKNYFLTYPQCSLTKEDALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLDWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDFVLQFHNLNSNLDRIFAPPVEVFVCPFLSSSFDQVPEELEEWVSKNVRDAAARPWRPNSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWALKNAEFITLNSPLYSGTNQSATQNSQEEASSQAES

NCBI Accession NP_808833.1
Location 2156-2446
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCACAGGCACTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAA
Protein Sequence MGALISTCLSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNPAPTSSPTSTRTETPSIGESFRSTEDLQEGVNRQPMTLTHRHLTAAVSQRLLM

References More References in PubMed

1

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022
2

Development of a New Molecular Marker for the Resistance to Tomato Yellow Leaf Curl Virus.

Nevame AYM, et al.  Biomed Res Int. 2018 Jul 17;2018:8120281. doi: 10.1155/2018/8120281. eCollection 2018.

PMID: 30105248
3

Identification and characterization of Ageratum yellow vein Malaysia virus (AYVMV) and an associated betasatellite among begomoviruses infecting Solanum lycopersicum in Malaysia.

Mahmoudieh M, et al.  J Appl Genet. 2020 Dec;61(4):619-628. doi: 10.1007/s13353-020-00574-4. Epub 2020 Aug 17.

PMID: 32808206
4

Genetic Diversity, Pathogenicity and Pseudorecombination of Cucurbit-Infecting Begomoviruses in Malaysia.

Chen YJ, et al.  Plants (Basel). 2021 Nov 6;10(11):2396. doi: 10.3390/plants10112396.

PMID: 34834759
5

Molecular Characterization of Begomoviruses Associated with Leafcurl Diseases of Tomato in Bangladesh, Laos, Malaysia, Myanmar, and Vietnam.

Green SK, et al.  Plant Dis. 2001 Dec;85(12):1286. doi: 10.1094/PDIS.2001.85.12.1286A.

PMID: 30831796