Tomato leaf curl Malaysia virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000843005.1 |
| Isolate |
Malaysia: Klang |
| Release date |
2015/2/12 |
| Submitter |
Shih,S.L., Roff,M.M.N., Nakhla,M.K., Maxwell,D.P., Green,S.K. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTGGAAAAAGTGGGCCCCGCCACTAACAAATGTCCGCCACTAAGAACGCTCCCTCAGAGTCTATTTAGTGTGTGGGCCCCTATTTATATCTTGGTGGCCAAGTTTTATGACAAATATGTGGGATCCACTTTTGAATGAGTTTCCGGAGACTGTTCATGGTCTACGGTGTATGTTAGCTAAGAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGATTGGGTACGATTTGTTCTGTGATCTCATCAATCTTCTCAACACAAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCCAAAGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGACATGATATATCTCATGTGGGTAAGGTTTTATGTGTTAGTGACGTTACTCGTGGTAATGGGTTTACCCATCGTGTGGGCAAGAGATTTTGTGTGAAGTCCATTTACGTTTTGGGTAAAATATGGATGGACGAGAATATCAAGACGAAGAATCACACCAACACTGTGATGTTCTTCCTTGTTCGTGATAGAAGGCCCTTTGGCACTGCGATGGATTTTGGACAGGTTTTTAACATGTATGACAACGAGCCTAGTACTGCAACTGTGAAGAACGATATGCGAGATCGATATCAGGTGTTGAGGAAATTCACTGCAACCGTTACGGGTGGACAATATGCCTCTAAGGAACAGGCGTTGGTTAGGAAGTTTATGAAGGTCAATAATTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAACGCTCTTTTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAATATTAAATTTTATTCTATGAGAAAATTGAGCATCAATTGTGCCCTCAAATACATCATACACCACATGGGACATTGCCCTAATTACATTGTTAATACTAATAACTCCTAACCTATTTAAGTACCTCATGCATTGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAAGATGTAAACGAGTCCAGATTTGGCAGGTTAGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGCACTTGTATGGTTACGATGTCGTGGTTCCTCAGGAATGGCCTCTCGTGGTGCTGGGTTATCTTGAAATAGAGGGGATTTTTGATCGTCCAAGTATACACGCCACTCTCGCATTGAGTTACAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATTTATGCTGAAGTAGTAGGAACACCCACACGTTAGATCAACTCTCCGCCTGCGAACTGGCTTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCTGCATTCTTTAATGCCCACTCTTTTAATGCTGAATTCTTTTCCTCATCCAAGTACTCTTTATATGATGACGTTGGGCCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTTAATTTGAATTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCACGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAACGAACGGGCCCACATTGTCTTTCCTGTACGACTCTCTCCCTCTATGACAATACTATTGGGTCTCCAAGGCCGCGCAGCGGCATCCCTGACGTTCTTAGAAACCCACTCTTCAAGTTCTTCGGGAACTTGATCGAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTACAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAACTCCTTAATTACATTAAGAGCCTCTGACTTACTGCCGCTGTTAAGTGCCTGTGCGTAAGCGTCATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATATATTTCTTGTTGGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCATCTTCCTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAGTAATTTTTGGCATTTATTTTAAATGGTCTTGGAGGAGCCATTGACTTGGTCAATCGGTGTCTCTACTAATTCTCTATCAATCGGTGTACTGGAGTCCTATATATAGTTAGACCCCAAATGGCATTGTCGTAATTCCCAAAGGAAATTCAAAATTCAAATTCAAATTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_808828.1
|
|
Location
|
124-483 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGACAAATATGTGGGATCCACTTTTGAATGAGTTTCCGGAGACTGTTCATGGTCTACGGTGTATGTTAGCTAAGAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGATTGGGTACGATTTGTTCTGTGATCTCATCAATCTTCTCAACACAAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MTNMWDPLLNEFPETVHGLRCMLAKKYVQEVQKTYSPDTIGYDLFCDLINLLNTKNYEQASSRYSHFYARLQGTPPSELRHPIFQPCCCPHCPRHKQKASMDTEAHVSEAQNVQNVQKP |
|
NCBI Accession
|
NP_808829.1
|
|
Location
|
293-1066 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACGCCCGTCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCATATTCCAGCCGTGCTGTTGCCCCCACTGTCCTCGTCACAAACAAAAGGCGAGCATGGACACAGAGGCCCATGTATCGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTTCCCAAAGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGACATGATATATCTCATGTGGGTAAGGTTTTATGTGTTAGTGACGTTACTCGTGGTAATGGGTTTACCCATCGTGTGGGCAAGAGATTTTGTGTGAAGTCCATTTACGTTTTGGGTAAAATATGGATGGACGAGAATATCAAGACGAAGAATCACACCAACACTGTGATGTTCTTCCTTGTTCGTGATAGAAGGCCCTTTGGCACTGCGATGGATTTTGGACAGGTTTTTAACATGTATGACAACGAGCCTAGTACTGCAACTGTGAAGAACGATATGCGAGATCGATATCAGGTGTTGAGGAAATTCACTGCAACCGTTACGGGTGGACAATATGCCTCTAAGGAACAGGCGTTGGTTAGGAAGTTTATGAAGGTCAATAATTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAACGCTCTTTTGTTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPVSKVRRRLNFDTPYSSRAVAPTVLVTNKRRAWTQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGFTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRYQVLRKFTATVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
NP_808830.1
|
|
Location
|
1063-1467 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTTTCGCACAGGGGAATTACTCACTGTAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAAAAATCCCCTCTATTTCAAGATAACCCAGCACCACGAGAGGCCATTCCTGAGGAACCACGACATCGTAACCATACAAGTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCTTCAGACTTGGCGTTTCTTAAGAGTATTTAAATATCAATGCATGAGGTACTTAAATAGGTTAGGAGTTATTAGTATTAACAATGTAATTAGGGCAATGTCCCATGTGGTGTATGATGTATTTGAGGGCACAATTGATGCTCAATTTTCTCATAGAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDFRTGELLTVTQCESGVYTWTIKNPLYFKITQHHERPFLRNHDIVTIQVQFNHNLRKALGIHQCFLTCQIWTRLHLQTWRFLRVFKYQCMRYLNRLGVISINNVIRAMSHVVYDVFEGTIDAQFSHRIKFNIY |
|
NCBI Accession
|
NP_808831.1
|
|
Location
|
1208-1615 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAGCCAGTTCGCAGGCGGAGAGTTGATCTAACGTGTGGGTGTTCCTACTACTTCAGCATAAATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGTAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAAAAATCCCCTCTATTTCAAGATAACCCAGCACCACGAGAGGCCATTCCTGAGGAACCACGACATCGTAACCATACAAGTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCTTCAGACTTGGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYFSINCANHGFSHRGITHCNSMREWRVYLDDQKSPLFQDNPAPREAIPEEPRHRNHTSAVQPQPEESVGDTPMFSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
NP_808832.1
|
|
Location
|
1515-2603 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGGCTCCTCCAAGACCATTTAAAATAAATGCCAAAAATTACTTCCTCACATACCCACAGTGCTCTCTCACTAAGGAAGATGCACTTTCCCAATTACAAAACCTAAACACCCCAACCAACAAGAAATATATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCACAGGCACTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAATTAAGGAGTTAGCTCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTGTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTCGATCAAGTTCCCGAAGAACTTGAAGAGTGGGTTTCTAAGAACGTCAGGGATGCCGCTGCGCGGCCTTGGAGACCCAATAGTATTGTCATAGAGGGAGAGAGTCGTACAGGAAAGACAATGTGGGCCCGTTCGTTGGGCCCACATAATTATCTGTGCGGTCATCTAGATCTGAGTCCAAAGGTGTACAGCAATGACGCGTGGTATAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAGTACGGGAAGCCAATTCAAATTAAAGGTGGCATCCCAACTATCTTCCTCTGCAATCCAGGCCCAACGTCATCATATAAAGAGTACTTGGATGAGGAAAAGAATTCAGCATTAAAAGAGTGGGCATTAAAGAATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAGCCAGTTCGCAGGCGGAGAGTTGA |
|
Protein Sequence
|
MAPPRPFKINAKNYFLTYPQCSLTKEDALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLDWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDFVLQFHNLNSNLDRIFAPPVEVFVCPFLSSSFDQVPEELEEWVSKNVRDAAARPWRPNSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWALKNAEFITLNSPLYSGTNQSATQNSQEEASSQAES |
|
NCBI Accession
|
NP_808833.1
|
|
Location
|
2156-2446 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGATTGGGGAGAGTTTCAGATCGACGGAAGATCTGCAAGAGGGGGTCAACAGACAGCCAATGACGCTTACGCACAGGCACTTAACAGCGGCAGTAAGTCAGAGGCTCTTAATGTAA |
|
Protein Sequence
|
MGALISTCLSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNPAPTSSPTSTRTETPSIGESFRSTEDLQEGVNRQPMTLTHRHLTAAVSQRLLM |