Genus | Begomovirus |
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NCBI Assembly | GCF_000857385.1 |
Isolate | Madagascar:Morondova,2001 |
Release date | 2015/2/13 |
Submitter | Delatte,H., Martin,D.P., Naze,F., Goldbach,R., Reynaud,B., Peterschmitt,M., Lett,J.M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_213931.1 |
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Location | 137-487 |
Gene Name | AV2 |
Protein Name | putative AV2 protein |
Coding Region | ATGTGGGATCCATTGTTAAATGAGTTCCCTGATTCTGTTCATGGTTTTCGTTGTATGCTTGCTGTAAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAACACTTTGGGCCACGATTTAATTCGCGATCTTATCTCTGTTATTAGGGCTCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA |
Protein Sequence | MWDPLLNEFPDSVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIYQPCCCPHCPRHKQASVMDLPAHVPKAQDVQNVQKP |
NCBI Accession | YP_213932.1 |
---|---|
Location | 297-1073 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGCAAAGGGATGATGTGAAGCATACGGGTATTGCTCGCTGTGTTAGCGATGTGACGCGTGGTTCGGGTATCACTCATAGGGTTGGTAAGAGATTTTGTATTAAGTCCATTTACATTTTAGGTAAAGTATGGATGGATGAAAATATAAAGAAGCAGAATCACACGAACAACGTGATGTTCTTCTTGGTCCGAGATCGCAGGCCCAGTGGATCAGCGCCCATGGACTTTGGGCAGGTGTTTAACATGTTTGACAATGAGCCCAGTACTGCGACTGTGAAGAATGATTTGCGAGATAGGTTACAGGTTTTGCGCAAGTTTCATGCTACCGTTGTTGGTGGTCCTTCTGGGATGAAGGAACAGGCTTTAGTTAAGAGATTTTATAGGATTAATAATCATGTAGTTTATAATCACCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTACGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAA |
Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVAVPIAPATNRRRSWTYRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHTGIARCVSDVTRGSGITHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPSGSAPMDFGQVFNMFDNEPSTATVKNDLRDRLQVLRKFHATVVGGPSGMKEQALVKRFYRINNHVVYNHQEAAKYENHTENALLLYMACTHYSNPVYATLKIRIYFYDAVTN |
NCBI Accession | YP_213933.1 |
---|---|
Location | 1070-1474 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAATTCAGGTCCTCAGATATTTAGATAGATTAGGTGTTATTTCAATTAATACTGTAATTAGGGCAGTTGATCATGTATTGTATGATGTACTTGTAAATACACTCCAGGTTTTGGAGGATCATGAAATAAAATTTAATATTTATTAA |
Protein Sequence | MDSRTGELITAPQAQNGVFIWEINNPLYFTITSHEIRPFNMNHDIINIQIRFNHNLRKELGIHKCFLNFKVWTTLRPQTGRFLRVFRIQVLRYLDRLGVISINTVIRAVDHVLYDVLVNTLQVLEDHEIKFNIY |
NCBI Accession | YP_213934.1 |
---|---|
Location | 1215-1622 |
Gene Name | transcriptional transactivator protein |
Protein Name | AC2 |
Coding Region | ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAAACGGGTTGACCTAGACTGCGGCTGCTCATATTATCTCCACATCGACTGCTCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG |
Protein Sequence | MRPSSPSTSHCSQVPIKVQHRIAKKRTIRRKRVDLDCGCSYYLHIDCSNHGFTHRGTHHCSSGTEWRVYLGDKQSPLFHDHQPRNKAIQHEPRHHQHPDKIQPQPQEGTGDSQMFSQLQGLDDLTASDWSFLKGI |
NCBI Accession | YP_213935.1 |
---|---|
Location | 1531-2610 |
Gene Name | AC1 |
Protein Name | replication-associated protein |
Coding Region | ATGGCTCCTCTACGTCGATTTAAAATTTGCGCAAAAAATTATTTCCTCACTTATCCAAAGTGCTCTCTCACCAAAGAGGAAACACTTTCCCAAATACAATCCCTACAAACCCCAGTAAATAAACTGTTCATCAAAATTTGCAGAGAGCTTCACGAGAATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCCCCTAAGGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCTCCGGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCGGAAGAACTTGAAGAGTGGGTGAGTGAGAACGTGATGGATGCCGCTGCGCGGCCGTGGAGACCGAATAGTATTGTAATCGAGGGTGATAGTCGTACCGGAAAGACAATGTGGGCCAGGTCATTGGGACCACATAACTATTTATGTGGCCATCTTGATCTCAGCCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATCTAAAGCACTTTAAGGAATTTATGGGAGCGCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACAATCTTCCTATGCAATCCAGGCCCAACGTCGTCCTATAAAGAATTTCTGGACGAGGAAAGGAACGCAGCACTCAAGCAGTGGGCAATTAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAA |
Protein Sequence | MAPLRRFKICAKNYFLTYPKCSLTKEETLSQIQSLQTPVNKLFIKICRELHENGEPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEERNAALKQWAIKNATFVTLHEPLFTSANQGPTPYSEEENHTA |
NCBI Accession | YP_213936.1 |
---|---|
Location | 2151-2453 |
Gene Name | AC4 |
Protein Name | putative AC4 protein |
Coding Region | ATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG |
Protein Sequence | MGNLTSMCLSNSKVSTSARIRDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETPSNGENFKLMADLQGEGNNQPMTLTPQLLTQAVSQRLLESLRN |
1 |
A New Tomato leaf curl virus from Mayotte. Lett JM, et al. Plant Dis. 2004 Jun;88(6):681. doi: 10.1094/PDIS.2004.88.6.681B. PMID: 30812598 |
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2 |
Osei MK, et al. Plant Dis. 2008 Nov;92(11):1585. doi: 10.1094/PDIS-92-11-1585B. PMID: 30764452 |
3 |
A novel cassava-infecting begomovirus from Madagascar: cassava mosaic Madagascar virus. Harimalala M, et al. Arch Virol. 2012 Oct;157(10):2027-30. doi: 10.1007/s00705-012-1399-3. Epub 2012 Jul 10. PMID: 22777180 |
4 |
First Molecular Identification of a Begomovirus Isolated from Tomato in Madagascar. Delatte H, et al. Plant Dis. 2002 Dec;86(12):1404. doi: 10.1094/PDIS.2002.86.12.1404C. PMID: 30818457 |
5 |
Delatte H, et al. J Gen Virol. 2005 May;86(Pt 5):1533-1542. doi: 10.1099/vir.0.80805-0. PMID: 15831967 |
6 |
Delatte H, et al. Bull Entomol Res. 2005 Feb;95(1):29-35. doi: 10.1079/ber2004337. PMID: 15705212 |