Tomato leaf curl Madagascar virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000857385.1
Isolate Madagascar:Morondova,2001
Release date 2015/2/13
Submitter Delatte,H., Martin,D.P., Naze,F., Goldbach,R., Reynaud,B., Peterschmitt,M., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_006874
ACCGGATGGCCGCGCCCCCGAAAAAGAAGTGGTCCCCCCCACTATACTATGTCGTCCAATGAAATTGTGTCCTGGAAGGTTATTTATTGGGTTTTGTCCTTATATACTTGGCCGCTAAGTTTGTGGGCCTGTCACAATGTGGGATCCATTGTTAAATGAGTTCCCTGATTCTGTTCATGGTTTTCGTTGTATGCTTGCTGTAAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAACACTTTGGGCCACGATTTAATTCGCGATCTTATCTCTGTTATTAGGGCTCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGCAAAGGGATGATGTGAAGCATACGGGTATTGCTCGCTGTGTTAGCGATGTGACGCGTGGTTCGGGTATCACTCATAGGGTTGGTAAGAGATTTTGTATTAAGTCCATTTACATTTTAGGTAAAGTATGGATGGATGAAAATATAAAGAAGCAGAATCACACGAACAACGTGATGTTCTTCTTGGTCCGAGATCGCAGGCCCAGTGGATCAGCGCCCATGGACTTTGGGCAGGTGTTTAACATGTTTGACAATGAGCCCAGTACTGCGACTGTGAAGAATGATTTGCGAGATAGGTTACAGGTTTTGCGCAAGTTTCATGCTACCGTTGTTGGTGGTCCTTCTGGGATGAAGGAACAGGCTTTAGTTAAGAGATTTTATAGGATTAATAATCATGTAGTTTATAATCACCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTACGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAATAAATATTAAATTTTATTTCATGATCCTCCAAAACCTGGAGTGTATTTACAAGTACATCATACAATACATGATCAACTGCCCTAATTACAGTATTAATTGAAATAACACCTAATCTATCTAAATATCTGAGGACCTGAATTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGAATGGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATTGTTTATCTCCCAGATAAACACGCCATTCTGTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGAGCAGTCGATGTGGAGATAATATGAGCAGCCGCAGTCTAGGTCAACCCGTTTACGCCGTATGGTTCTCTTCTTCGCTATACGGTGTTGGACCTTGATTGGCACTTGTGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTAATTGCCCACTGCTTGAGTGCTGCGTTCCTTTCCTCGTCCAGAAATTCTTTATAGGACGACGTTGGGCCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCTTTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTGAGATCAAGATGGCCACATAAATAGTTATGTGGTCCCAATGACCTGGCCCACATTGTCTTTCCGGTACGACTATCACCCTCGATTACAATACTATTCGGTCTCCACGGCCGCGCAGCGGCATCCATCACGTTCTCACTCACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCCGGAGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACAAAATCCTTAGGGGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGCCCTCCCCTTGCAGATCTGCCATCAATTTGAAATTCTCCCCATTCGATGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTACCTTCGAATTGGATAAGCACATGGAGGTGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAAATTTTGATGAACAGTTTATTTACTGGGGTTTGTAGGGATTGTATTTGGGAAAGTGTTTCCTCTTTGGTGAGAGAGCACTTTGGATAAGTGAGGAAATAATTTTTTGCGCAAATTTTAAATCGACGTAGAGGAGCCATTTAGTCAATGTACTCCGATTGACCACTAATTCATTTGCTGTCTGCAATCGGAGTATTGGTGGCCAATATATAGGTGTACTCCAAATGGCATTATGGTAAATAGCTAAAGTTTTTTAATTTTGAAATTCAAAATTTGAAATTCTAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_213931.1
Location 137-487
Gene Name AV2
Protein Name putative AV2 protein
Coding Region ATGTGGGATCCATTGTTAAATGAGTTCCCTGATTCTGTTCATGGTTTTCGTTGTATGCTTGCTGTAAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAACACTTTGGGCCACGATTTAATTCGCGATCTTATCTCTGTTATTAGGGCTCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIYQPCCCPHCPRHKQASVMDLPAHVPKAQDVQNVQKP

NCBI Accession YP_213932.1
Location 297-1073
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGCAAAGGGATGATGTGAAGCATACGGGTATTGCTCGCTGTGTTAGCGATGTGACGCGTGGTTCGGGTATCACTCATAGGGTTGGTAAGAGATTTTGTATTAAGTCCATTTACATTTTAGGTAAAGTATGGATGGATGAAAATATAAAGAAGCAGAATCACACGAACAACGTGATGTTCTTCTTGGTCCGAGATCGCAGGCCCAGTGGATCAGCGCCCATGGACTTTGGGCAGGTGTTTAACATGTTTGACAATGAGCCCAGTACTGCGACTGTGAAGAATGATTTGCGAGATAGGTTACAGGTTTTGCGCAAGTTTCATGCTACCGTTGTTGGTGGTCCTTCTGGGATGAAGGAACAGGCTTTAGTTAAGAGATTTTATAGGATTAATAATCATGTAGTTTATAATCACCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTACGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVAVPIAPATNRRRSWTYRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHTGIARCVSDVTRGSGITHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPSGSAPMDFGQVFNMFDNEPSTATVKNDLRDRLQVLRKFHATVVGGPSGMKEQALVKRFYRINNHVVYNHQEAAKYENHTENALLLYMACTHYSNPVYATLKIRIYFYDAVTN

NCBI Accession YP_213933.1
Location 1070-1474
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAATTCAGGTCCTCAGATATTTAGATAGATTAGGTGTTATTTCAATTAATACTGTAATTAGGGCAGTTGATCATGTATTGTATGATGTACTTGTAAATACACTCCAGGTTTTGGAGGATCATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAPQAQNGVFIWEINNPLYFTITSHEIRPFNMNHDIINIQIRFNHNLRKELGIHKCFLNFKVWTTLRPQTGRFLRVFRIQVLRYLDRLGVISINTVIRAVDHVLYDVLVNTLQVLEDHEIKFNIY

NCBI Accession YP_213934.1
Location 1215-1622
Gene Name transcriptional transactivator protein
Protein Name AC2
Coding Region ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAAACGGGTTGACCTAGACTGCGGCTGCTCATATTATCTCCACATCGACTGCTCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSTSHCSQVPIKVQHRIAKKRTIRRKRVDLDCGCSYYLHIDCSNHGFTHRGTHHCSSGTEWRVYLGDKQSPLFHDHQPRNKAIQHEPRHHQHPDKIQPQPQEGTGDSQMFSQLQGLDDLTASDWSFLKGI

NCBI Accession YP_213935.1
Location 1531-2610
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGGCTCCTCTACGTCGATTTAAAATTTGCGCAAAAAATTATTTCCTCACTTATCCAAAGTGCTCTCTCACCAAAGAGGAAACACTTTCCCAAATACAATCCCTACAAACCCCAGTAAATAAACTGTTCATCAAAATTTGCAGAGAGCTTCACGAGAATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCCCCTAAGGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCTCCGGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCGGAAGAACTTGAAGAGTGGGTGAGTGAGAACGTGATGGATGCCGCTGCGCGGCCGTGGAGACCGAATAGTATTGTAATCGAGGGTGATAGTCGTACCGGAAAGACAATGTGGGCCAGGTCATTGGGACCACATAACTATTTATGTGGCCATCTTGATCTCAGCCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATCTAAAGCACTTTAAGGAATTTATGGGAGCGCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACAATCTTCCTATGCAATCCAGGCCCAACGTCGTCCTATAAAGAATTTCTGGACGAGGAAAGGAACGCAGCACTCAAGCAGTGGGCAATTAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAA
Protein Sequence MAPLRRFKICAKNYFLTYPKCSLTKEETLSQIQSLQTPVNKLFIKICRELHENGEPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEERNAALKQWAIKNATFVTLHEPLFTSANQGPTPYSEEENHTA

NCBI Accession YP_213936.1
Location 2151-2453
Gene Name AC4
Protein Name putative AC4 protein
Coding Region ATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG
Protein Sequence MGNLTSMCLSNSKVSTSARIRDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETPSNGENFKLMADLQGEGNNQPMTLTPQLLTQAVSQRLLESLRN

References More References in PubMed

1

A New Tomato leaf curl virus from Mayotte.

Lett JM, et al.  Plant Dis. 2004 Jun;88(6):681. doi: 10.1094/PDIS.2004.88.6.681B.

PMID: 30812598
2

First Report and Molecular Characterization of DNA A of Three Distinct Begomoviruses Associated with Tomato Leaf Curl Disease in Ghana.

Osei MK, et al.  Plant Dis. 2008 Nov;92(11):1585. doi: 10.1094/PDIS-92-11-1585B.

PMID: 30764452
3

A novel cassava-infecting begomovirus from Madagascar: cassava mosaic Madagascar virus.

Harimalala M, et al.  Arch Virol. 2012 Oct;157(10):2027-30. doi: 10.1007/s00705-012-1399-3. Epub 2012 Jul 10.

PMID: 22777180
4

First Molecular Identification of a Begomovirus Isolated from Tomato in Madagascar.

Delatte H, et al.  Plant Dis. 2002 Dec;86(12):1404. doi: 10.1094/PDIS.2002.86.12.1404C.

PMID: 30818457
5

South West Indian Ocean islands tomato begomovirus populations represent a new major monopartite begomovirus group.

Delatte H, et al.  J Gen Virol. 2005 May;86(Pt 5):1533-1542. doi: 10.1099/vir.0.80805-0.

PMID: 15831967
6

A new silverleaf-inducing biotype Ms of Bemisia tabaci (Hemiptera: Aleyrodidae) indigenous to the islands of the south-west Indian Ocean.

Delatte H, et al.  Bull Entomol Res. 2005 Feb;95(1):29-35. doi: 10.1079/ber2004337.

PMID: 15705212