Tomato leaf curl Laos virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000842065.1 |
| Isolate | Laos |
| Release date | 2015/2/12 |
| Submitter | Tsai,W.S., Nakhla,M.K., Maxwell,D.P., Green,S.K., Black,L.L. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_004613
ACCGGATGGCCGCGATTTTTTTAAAAGTGGGCCCCCCCACTAAAATATGTCCCCCACTCAGAACGCGCCCTCAGAGCCTATTTAGTGTGTGGTCCCCTATTTATATCTTGGTGACCAAGTTTCATTTCAAACATGTGGGACCCACTTTTGAACGAGTTCCCTGAGACTGTTCATGGTCTACGGTGTATGCTAGCCAAAAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGGTTGGGTACGATTTATTTTGTGATTTAATACATCTCTTAAACACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGAGCAGAGACATGATGTATCCCATGTGGGTAAAGTGTTGTGTGTTAGTGATGTCACTCGTGGAAATGGGCTTACCCATCGTGTGGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTGTTGGGCAAAATTTGGATGGATGAGAATATCAAGACTAAGAACCATACCAACACTGTAATGTTCTTTCTGGTCCGCGATAGAAGGCCCTTCGGTACTGCTATGGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCCAGTACTGCCACTGTGAAGAATGATATGAGAGATCGTTACCAGGTGCTAAGGAAGTTTACTGCAACTGTGACTGGTGGCCAGTATGCCTCTAAGGAGCAGGCGTTAGTTAGGAAGTTCATGAAAATTAATAACTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAATGCCCTTTTATTGTATATGGCATGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAATATTGAATTTTATTATATATGAAAATTGAGCATCAATTGTGCCTTCGAATACATTGTACAATACATGATTGATTGCCCTAATTACATTGTTAATGCTAATAACTCCTAATCTATCTAAATACTTCATACATTGGTATTTAAATACTCTTAAGAAATGCCCAGTCCGAGGATGTAAACGAGTCCAGATTTGGCAGATTGGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGACTGTTATTATGTCGTGTTCCCGGAAGAATGGTCTCTCGATGTGCTTGGTTATCTTGAAATAGAGGGGATTTGGGACCGTCCAGATATACGCGCCACTCTCTGCTTGAGTTGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGGTTGTGACAGTTGATGCTAATGAAGTATGAGCATCCACAGGGAAGATCAACTCTACGTCTGCGAATTGGCCTCTTCTTGGCTATTCTGTGCTTGACTTTGATGGGTACCTGAGTACAGTGGCTCCGTGAGGGTGATGAATTCTGCATTCTTTACTGCCCAGTCTTTTAATGCTGAATTCTTTTCCTCGTCCAAGTACTCTTTATACGATGATGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTACACCTTTGGACTCAAGTCAAGGTGCCCACACAAATAATTATGTGGGCCTAAAGACCTGGCCCACATTGTCTTTCCTGTTCTGCTCTCTCCCTCGATGACTATACTTTTGGGCCTCCAAGGCCGCGCAGCGGCATCCCTTACATTCTCGGACACCCACTCTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAATCTTTGGGGGCTAATTCTTTAATTACATTAAGAGCCTCTGACTTACTTCCGCTGTTAAGTGCTTTGGCGTAAGCGTCATTGGCTGTCTGTTGTCCTCCCCTTGCAGATCTTCCATCGATCTGAAACTCGCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTAACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGACACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAAATTTTGATATATTTTTTATTTGTTGGGGTTTGTAGGGTTTGTAATTGGGAAAGTGCTTCTTCCTTTGTGAGTGAGCACTGGGGATATGTAAGAAAATAATTTTTGGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAATTCTCTGCAATCGGGGGAACGGGGGGGCAATTTATATGTGCCCCCCAAATGGCATTCTCGTAATTCCCAAAAGAAATTCAAATTCAAATTCAAATTCCTAAAGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | NP_803239.1 |
|---|---|
| Location | 133-483 |
| Gene Name | V2 |
| Protein Name | pre-coat protein |
| Coding Region | ATGTGGGACCCACTTTTGAACGAGTTCCCTGAGACTGTTCATGGTCTACGGTGTATGCTAGCCAAAAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGGTTGGGTACGATTTATTTTGTGATTTAATACATCTCTTAAACACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGA |
| Protein Sequence | MWDPLLNEFPETVHGLRCMLAKKYVQEVQKTYSPDTVGYDLFCDLIHLLNTKNYEQASSRYSHFYSRLQGTPPSELRHPLYQSCCCPHCPRHKQKTSMDSEAHVSETQNVQNVQKP |
| NCBI Accession | NP_803240.1 |
|---|---|
| Location | 293-1066 |
| Gene Name | V1 |
| Protein Name | coat protein |
| Coding Region | ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGAGCAGAGACATGATGTATCCCATGTGGGTAAAGTGTTGTGTGTTAGTGATGTCACTCGTGGAAATGGGCTTACCCATCGTGTGGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTGTTGGGCAAAATTTGGATGGATGAGAATATCAAGACTAAGAACCATACCAACACTGTAATGTTCTTTCTGGTCCGCGATAGAAGGCCCTTCGGTACTGCTATGGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCCAGTACTGCCACTGTGAAGAATGATATGAGAGATCGTTACCAGGTGCTAAGGAAGTTTACTGCAACTGTGACTGGTGGCCAGTATGCCTCTAAGGAGCAGGCGTTAGTTAGGAAGTTCATGAAAATTAATAACTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAATGCCCTTTTATTGTATATGGCATGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA |
| Protein Sequence | MSKRPADIVISTPASKVRRRLNFDTPYTSRAAVPTVLVTNKRRAWIQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDVSHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| NCBI Accession | NP_803241.1 |
|---|---|
| Location | 1063-1467 |
| Gene Name | C3 |
| Protein Name | C3 protein |
| Coding Region | ATGGATTCACGCACCGGGGAACCCATCACTGCAACTCAAGCAGAGAGTGGCGCGTATATCTGGACGGTCCCAAATCCCCTCTATTTCAAGATAACCAAGCACATCGAGAGACCATTCTTCCGGGAACACGACATAATAACAGTCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCCAATCTGCCAAATCTGGACTCGTTTACATCCTCGGACTGGGCATTTCTTAAGAGTATTTAAATACCAATGTATGAAGTATTTAGATAGATTAGGAGTTATTAGCATTAACAATGTAATTAGGGCAATCAATCATGTATTGTACAATGTATTCGAAGGCACAATTGATGCTCAATTTTCATATATAATAAAATTCAATATTTATTAA |
| Protein Sequence | MDSRTGEPITATQAESGAYIWTVPNPLYFKITKHIERPFFREHDIITVQIQFNHNLRKALGIHQCFPICQIWTRLHPRTGHFLRVFKYQCMKYLDRLGVISINNVIRAINHVLYNVFEGTIDAQFSYIIKFNIY |
| NCBI Accession | NP_803242.1 |
|---|---|
| Location | 1208-1615 |
| Gene Name | C2 |
| Protein Name | C2 protein |
| Coding Region | ATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCAAGCACAGAATAGCCAAGAAGAGGCCAATTCGCAGACGTAGAGTTGATCTTCCCTGTGGATGCTCATACTTCATTAGCATCAACTGTCACAACCATGGATTCACGCACCGGGGAACCCATCACTGCAACTCAAGCAGAGAGTGGCGCGTATATCTGGACGGTCCCAAATCCCCTCTATTTCAAGATAACCAAGCACATCGAGAGACCATTCTTCCGGGAACACGACATAATAACAGTCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCCAATCTGCCAAATCTGGACTCGTTTACATCCTCGGACTGGGCATTTCTTAAGAGTATTTAA |
| Protein Sequence | MQNSSPSRSHCTQVPIKVKHRIAKKRPIRRRRVDLPCGCSYFISINCHNHGFTHRGTHHCNSSREWRVYLDGPKSPLFQDNQAHRETILPGTRHNNSPNTVQPQPEESVGDTPMFSNLPNLDSFTSSDWAFLKSI |
| NCBI Accession | NP_803243.1 |
|---|---|
| Location | 1521-2603 |
| Gene Name | C1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCCAAAAATTATTTTCTTACATATCCCCAGTGCTCACTCACAAAGGAAGAAGCACTTTCCCAATTACAAACCCTACAAACCCCAACAAATAAAAAATATATCAAAATTTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTTAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGGGGAGGACAACAGACAGCCAATGACGCTTACGCCAAAGCACTTAACAGCGGAAGTAAGTCAGAGGCTCTTAATGTAATTAAAGAATTAGCCCCCAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTGTCCGAGAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGGCCCAAAAGTATAGTCATCGAGGGAGAGAGCAGAACAGGAAAGACAATGTGGGCCAGGTCTTTAGGCCCACATAATTATTTGTGTGGGCACCTTGACTTGAGTCCAAAGGTGTACAGTAATGATGCATGGTACAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGATTGGCAAAGCAACACAAAGTACGGGAAGCCCATGCAAATTAAAGGTGGGATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACATCATCGTATAAAGAGTACTTGGACGAGGAAAAGAATTCAGCATTAAAAGACTGGGCAGTAAAGAATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCAAGCACAGAATAGCCAAGAAGAGGCCAATTCGCAGACGTAG |
| Protein Sequence | MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLQTLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQTANDAYAKALNSGSKSEALNVIKELAPKDYVLQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVRDAAARPWRPKSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAVKNAEFITLTEPLYSGTHQSQAQNSQEEANSQT |
| NCBI Accession | NP_803244.1 |
|---|---|
| Location | 2156-2446 |
| Gene Name | C4 |
| Protein Name | C4 protein |
| Coding Region | ATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTTAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGGGGAGGACAACAGACAGCCAATGACGCTTACGCCAAAGCACTTAACAGCGGAAGTAAGTCAGAGGCTCTTAATGTAA |
| Protein Sequence | MGLLISTCLSSSKGNTTARITDSSTWCPQPGQHISIRTFRELNQAQTLSPIWRRTETPSTGASFRSMEDLQGEDNRQPMTLTPKHLTAEVSQRLLM |
References More References in PubMed
| 1 |
First Report of Tomato yellow leaf curl Kanchanaburi virus Infecting Eggplant in Laos. Tang YF, et al. Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0696-PDN. PMID: 30708424 |
|---|---|
| 2 |
A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, India. Kumari P, et al. Plant Dis. 2009 May;93(5):545. doi: 10.1094/PDIS-93-5-0545B. PMID: 30764166 |
| 3 |
Kumari P, et al. Virus Res. 2010 Sep;152(1-2):19-29. doi: 10.1016/j.virusres.2010.05.015. Epub 2010 Jun 9. PMID: 20540978 |
| 4 |
Green SK, et al. Plant Dis. 2001 Dec;85(12):1286. doi: 10.1094/PDIS.2001.85.12.1286A. PMID: 30831796 |