Tomato leaf curl Laos virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842065.1
Isolate Laos
Release date 2015/2/12
Submitter Tsai,W.S., Nakhla,M.K., Maxwell,D.P., Green,S.K., Black,L.L.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004613
ACCGGATGGCCGCGATTTTTTTAAAAGTGGGCCCCCCCACTAAAATATGTCCCCCACTCAGAACGCGCCCTCAGAGCCTATTTAGTGTGTGGTCCCCTATTTATATCTTGGTGACCAAGTTTCATTTCAAACATGTGGGACCCACTTTTGAACGAGTTCCCTGAGACTGTTCATGGTCTACGGTGTATGCTAGCCAAAAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGGTTGGGTACGATTTATTTTGTGATTTAATACATCTCTTAAACACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGAGCAGAGACATGATGTATCCCATGTGGGTAAAGTGTTGTGTGTTAGTGATGTCACTCGTGGAAATGGGCTTACCCATCGTGTGGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTGTTGGGCAAAATTTGGATGGATGAGAATATCAAGACTAAGAACCATACCAACACTGTAATGTTCTTTCTGGTCCGCGATAGAAGGCCCTTCGGTACTGCTATGGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCCAGTACTGCCACTGTGAAGAATGATATGAGAGATCGTTACCAGGTGCTAAGGAAGTTTACTGCAACTGTGACTGGTGGCCAGTATGCCTCTAAGGAGCAGGCGTTAGTTAGGAAGTTCATGAAAATTAATAACTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAATGCCCTTTTATTGTATATGGCATGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAATATTGAATTTTATTATATATGAAAATTGAGCATCAATTGTGCCTTCGAATACATTGTACAATACATGATTGATTGCCCTAATTACATTGTTAATGCTAATAACTCCTAATCTATCTAAATACTTCATACATTGGTATTTAAATACTCTTAAGAAATGCCCAGTCCGAGGATGTAAACGAGTCCAGATTTGGCAGATTGGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGACTGTTATTATGTCGTGTTCCCGGAAGAATGGTCTCTCGATGTGCTTGGTTATCTTGAAATAGAGGGGATTTGGGACCGTCCAGATATACGCGCCACTCTCTGCTTGAGTTGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGGTTGTGACAGTTGATGCTAATGAAGTATGAGCATCCACAGGGAAGATCAACTCTACGTCTGCGAATTGGCCTCTTCTTGGCTATTCTGTGCTTGACTTTGATGGGTACCTGAGTACAGTGGCTCCGTGAGGGTGATGAATTCTGCATTCTTTACTGCCCAGTCTTTTAATGCTGAATTCTTTTCCTCGTCCAAGTACTCTTTATACGATGATGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTACACCTTTGGACTCAAGTCAAGGTGCCCACACAAATAATTATGTGGGCCTAAAGACCTGGCCCACATTGTCTTTCCTGTTCTGCTCTCTCCCTCGATGACTATACTTTTGGGCCTCCAAGGCCGCGCAGCGGCATCCCTTACATTCTCGGACACCCACTCTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAATCTTTGGGGGCTAATTCTTTAATTACATTAAGAGCCTCTGACTTACTTCCGCTGTTAAGTGCTTTGGCGTAAGCGTCATTGGCTGTCTGTTGTCCTCCCCTTGCAGATCTTCCATCGATCTGAAACTCGCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTAACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGACACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAAATTTTGATATATTTTTTATTTGTTGGGGTTTGTAGGGTTTGTAATTGGGAAAGTGCTTCTTCCTTTGTGAGTGAGCACTGGGGATATGTAAGAAAATAATTTTTGGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAATTCTCTGCAATCGGGGGAACGGGGGGGCAATTTATATGTGCCCCCCAAATGGCATTCTCGTAATTCCCAAAAGAAATTCAAATTCAAATTCAAATTCCTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_803239.1
Location 133-483
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGACCCACTTTTGAACGAGTTCCCTGAGACTGTTCATGGTCTACGGTGTATGCTAGCCAAAAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGGTTGGGTACGATTTATTTTGTGATTTAATACATCTCTTAAACACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGLRCMLAKKYVQEVQKTYSPDTVGYDLFCDLIHLLNTKNYEQASSRYSHFYSRLQGTPPSELRHPLYQSCCCPHCPRHKQKTSMDSEAHVSETQNVQNVQKP

NCBI Accession NP_803240.1
Location 293-1066
Gene Name V1
Protein Name coat protein
Coding Region ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGAGCAGAGACATGATGTATCCCATGTGGGTAAAGTGTTGTGTGTTAGTGATGTCACTCGTGGAAATGGGCTTACCCATCGTGTGGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTGTTGGGCAAAATTTGGATGGATGAGAATATCAAGACTAAGAACCATACCAACACTGTAATGTTCTTTCTGGTCCGCGATAGAAGGCCCTTCGGTACTGCTATGGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCCAGTACTGCCACTGTGAAGAATGATATGAGAGATCGTTACCAGGTGCTAAGGAAGTTTACTGCAACTGTGACTGGTGGCCAGTATGCCTCTAAGGAGCAGGCGTTAGTTAGGAAGTTCATGAAAATTAATAACTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAATGCCCTTTTATTGTATATGGCATGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDTPYTSRAAVPTVLVTNKRRAWIQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDVSHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_803241.1
Location 1063-1467
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACCGGGGAACCCATCACTGCAACTCAAGCAGAGAGTGGCGCGTATATCTGGACGGTCCCAAATCCCCTCTATTTCAAGATAACCAAGCACATCGAGAGACCATTCTTCCGGGAACACGACATAATAACAGTCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCCAATCTGCCAAATCTGGACTCGTTTACATCCTCGGACTGGGCATTTCTTAAGAGTATTTAAATACCAATGTATGAAGTATTTAGATAGATTAGGAGTTATTAGCATTAACAATGTAATTAGGGCAATCAATCATGTATTGTACAATGTATTCGAAGGCACAATTGATGCTCAATTTTCATATATAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITATQAESGAYIWTVPNPLYFKITKHIERPFFREHDIITVQIQFNHNLRKALGIHQCFPICQIWTRLHPRTGHFLRVFKYQCMKYLDRLGVISINNVIRAINHVLYNVFEGTIDAQFSYIIKFNIY

NCBI Accession NP_803242.1
Location 1208-1615
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCAAGCACAGAATAGCCAAGAAGAGGCCAATTCGCAGACGTAGAGTTGATCTTCCCTGTGGATGCTCATACTTCATTAGCATCAACTGTCACAACCATGGATTCACGCACCGGGGAACCCATCACTGCAACTCAAGCAGAGAGTGGCGCGTATATCTGGACGGTCCCAAATCCCCTCTATTTCAAGATAACCAAGCACATCGAGAGACCATTCTTCCGGGAACACGACATAATAACAGTCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCCAATCTGCCAAATCTGGACTCGTTTACATCCTCGGACTGGGCATTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPSRSHCTQVPIKVKHRIAKKRPIRRRRVDLPCGCSYFISINCHNHGFTHRGTHHCNSSREWRVYLDGPKSPLFQDNQAHRETILPGTRHNNSPNTVQPQPEESVGDTPMFSNLPNLDSFTSSDWAFLKSI

NCBI Accession NP_803243.1
Location 1521-2603
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCCAAAAATTATTTTCTTACATATCCCCAGTGCTCACTCACAAAGGAAGAAGCACTTTCCCAATTACAAACCCTACAAACCCCAACAAATAAAAAATATATCAAAATTTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTTAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGGGGAGGACAACAGACAGCCAATGACGCTTACGCCAAAGCACTTAACAGCGGAAGTAAGTCAGAGGCTCTTAATGTAATTAAAGAATTAGCCCCCAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTGTCCGAGAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGGCCCAAAAGTATAGTCATCGAGGGAGAGAGCAGAACAGGAAAGACAATGTGGGCCAGGTCTTTAGGCCCACATAATTATTTGTGTGGGCACCTTGACTTGAGTCCAAAGGTGTACAGTAATGATGCATGGTACAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGATTGGCAAAGCAACACAAAGTACGGGAAGCCCATGCAAATTAAAGGTGGGATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACATCATCGTATAAAGAGTACTTGGACGAGGAAAAGAATTCAGCATTAAAAGACTGGGCAGTAAAGAATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCAAGCACAGAATAGCCAAGAAGAGGCCAATTCGCAGACGTAG
Protein Sequence MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLQTLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQTANDAYAKALNSGSKSEALNVIKELAPKDYVLQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVRDAAARPWRPKSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAVKNAEFITLTEPLYSGTHQSQAQNSQEEANSQT

NCBI Accession NP_803244.1
Location 2156-2446
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTTAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGGGGAGGACAACAGACAGCCAATGACGCTTACGCCAAAGCACTTAACAGCGGAAGTAAGTCAGAGGCTCTTAATGTAA
Protein Sequence MGLLISTCLSSSKGNTTARITDSSTWCPQPGQHISIRTFRELNQAQTLSPIWRRTETPSTGASFRSMEDLQGEDNRQPMTLTPKHLTAEVSQRLLM

References More References in PubMed

1

First Report of Tomato yellow leaf curl Kanchanaburi virus Infecting Eggplant in Laos.

Tang YF, et al.  Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0696-PDN.

PMID: 30708424

2

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, India.

Kumari P, et al.  Plant Dis. 2009 May;93(5):545. doi: 10.1094/PDIS-93-5-0545B.

PMID: 30764166

3

Molecular characterization of a new species of Begomovirus and betasatellite causing leaf curl disease of tomato in India.

Kumari P, et al.  Virus Res. 2010 Sep;152(1-2):19-29. doi: 10.1016/j.virusres.2010.05.015. Epub 2010 Jun 9.

PMID: 20540978

4

Molecular Characterization of Begomoviruses Associated with Leafcurl Diseases of Tomato in Bangladesh, Laos, Malaysia, Myanmar, and Vietnam.

Green SK, et al.  Plant Dis. 2001 Dec;85(12):1286. doi: 10.1094/PDIS.2001.85.12.1286A.

PMID: 30831796