Tomato leaf curl Kerala virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000881415.1 |
| Isolate | India |
| Release date | 2015/2/22 |
| Submitter | Mukhopadhyay,S., Pandey,P., Nazeem,P.A., Mukherjee,S.K. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_011135
ACCGGATGGCCGCGAATTTTTTTGTGGGCCCCACAACGCACTAACTGACAACGACTAGTGGACCAATCACATGACGCGCTCAAAGCTTAATTGTTTTGTGGTCCCCTATTTATACTTCGGCACTAAGTATTGTACATTGCAAAATGTGGGATCCATTGTTAAACGAATTTCCCGACACTGTTCACGGTTTTAGATGTATGTTAGCAATTAAATATCTACAGTTAGTAGAAAACACTTATTCTCCTGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACACCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGTCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTACAATCATTTGAGCAAAGGCATGATATTTCTCATATTGGGAAGGTCATGTGTATTAGTGACGTTACTCGTGGGATTGGGCTAACTCATAGGGTTGGTAAGCGTTTCTGTGTTAAATCCGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGATCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGCACTGCTACTGTGAAGAATGTGCATCGAGATCGTTATCATGTTTTGAGGAAGTGGCATGCAACTGTCACTGGTGGTCAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAACGTAATAATTTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAATTCTGTGTACGCTACGCTGAAGATACGTATCTACTTCTATGATTCTGTAACAAACTGAATTAATAAAGATTGTATTTTATTGAATATGATTGGTCTACATATACAATGTGGTGTAATACATTCCATAATACATGATCAACAGCTCTAATTACATTGTTAATACTGATGACTCCTAAATTATTTAAATATTTATACACTTGGGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAGGTCATCCAGATTCGGAAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTGATGATGTCTTGGTTCATCAGGAATGGCCGGTTGTGGTGTTCTGTTATCTTGAAAAATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGGCTAATGCAATGAAGTATGAACAGCCGCACGGTAGATCAACACGTCGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGTACCTGAGTACAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAGTTTTTTAGTGCAGAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATTACTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATAGTCTTTCCCGTACTACTATCACCCCTCATGACTATACTTACAGGTCTCAAAGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCACTCTTCAAGTTCTTCTGGAACTTGATCAAGGAAGAAAGAAAAAAAGGGGGAAACATAACCTTCTTTAGGAAGTGTAAAATCCCTATCTAAATTAAGATCTAATAATGGAAATTGGAAAACAAAACCTTGGGGTGCTAATTCTTTAATTACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCATCATACGCTGACTGTGACCCCCCCTCTGCAGATCTCCATTCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTGGCACTTGTATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAGCTCTCTGCAGATTTTTATGTATTTTTTGTTGGTTGGTGTTGCTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTGGTGAGAGAGCATTTGGGATATGTTAGGAAATAATTTTTGGAGTTAATAAGGAAACGCTTTGGAGGCATGTTGACTAAGATAGAGGACCCGATTGACTGCTCTTGCAACTCTCCCCTGTATATCAGGTCTCAATATATAGTGAGACCCAAATGGCATAATGGTAATTAAAAAAACATTAATTTGAAATTCAAAACAAAAGGCTAAAGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | YP_002124294.1 |
|---|---|
| Location | 144-500 |
| Gene Name | AV2 |
| Protein Name | pre-coat protein |
| Coding Region | ATGTGGGATCCATTGTTAAACGAATTTCCCGACACTGTTCACGGTTTTAGATGTATGTTAGCAATTAAATATCTACAGTTAGTAGAAAACACTTATTCTCCTGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACACCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGTCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAG |
| Protein Sequence | MWDPLLNEFPDTVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHTRFEGTPPSQLRQPICQPCCCPHCPRHKVKSMGEQAHEQKAQDVQDVQKPRCP |
| NCBI Accession | YP_002124295.1 |
|---|---|
| Location | 304-1074 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACACCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGTCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTACAATCATTTGAGCAAAGGCATGATATTTCTCATATTGGGAAGGTCATGTGTATTAGTGACGTTACTCGTGGGATTGGGCTAACTCATAGGGTTGGTAAGCGTTTCTGTGTTAAATCCGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGATCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGCACTGCTACTGTGAAGAATGTGCATCGAGATCGTTATCATGTTTTGAGGAAGTGGCATGCAACTGTCACTGGTGGTCAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAACGTAATAATTTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAATTCTGTGTACGCTACGCTGAAGATACGTATCTACTTCTATGATTCTGTAACAAACTGA |
| Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKSRAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYHVLRKWHATVTGGQYASKEQALVKKFVNVIIYVVYNQQEAGKYENHSENALMLYMACTHASNSVYATLKIRIYFYDSVTN |
| NCBI Accession | YP_002124296.1 |
|---|---|
| Location | 1076-1480 |
| Gene Name | AC3 |
| Protein Name | AC3 |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATTTTTCAAGATAACAGAACACCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTTCCGAATCTGGATGACCTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAAGACCCAAGTGTATAAATATTTAAATAATTTAGGAGTCATCAGTATTAACAATGTAATTAGAGCTGTTGATCATGTATTATGGAATGTATTACACCACATTGTATATGTAGACCAATCATATTCAATAAAATACAATCTTTATTAA |
| Protein Sequence | MDSRTGEPITAAQAENGVFIWEIQNPLFFKITEHHNRPFLMNQDIITVQVQFNHNLRKVLGIHKCFLVFRIWMTSQPQTGRFLRVFKTQVYKYLNNLGVISINNVIRAVDHVLWNVLHHIVYVDQSYSIKYNLY |
| NCBI Accession | YP_002124297.1 |
|---|---|
| Location | 1221-1625 |
| Gene Name | AC2 |
| Protein Name | AC2 |
| Coding Region | ATGCGATCTTCGTCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGTGTTGATCTACCGTGCGGCTGTTCATACTTCATTGCATTAGCCTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATTTTTCAAGATAACAGAACACCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTTCCGAATCTGGATGACCTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAA |
| Protein Sequence | MRSSSPSKAHCTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHNHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRTPQPAIPDEPRHHHRPSTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKSL |
| NCBI Accession | YP_002124298.1 |
|---|---|
| Location | 1528-2610 |
| Gene Name | AC1 |
| Protein Name | AC1 |
| Coding Region | ATGCCTCCAAAGCGTTTCCTTATTAACTCCAAAAATTATTTCCTAACATATCCCAAATGCTCTCTCACCAAAGAAGAAGCACTTTCCCAATTACAAAACCTAGCAACACCAACCAACAAAAAATACATAAAAATCTGCAGAGAGCTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGAATGGAGATCTGCAGAGGGGGGGTCACAGTCAGCGTATGATGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTAATTAAAGAATTAGCACCCCAAGGTTTTGTTTTCCAATTTCCATTATTAGATCTTAATTTAGATAGGGATTTTACACTTCCTAAAGAAGGTTATGTTTCCCCCTTTTTTTCTTTCTTCCTTGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCTGCTGAGAACGTCGTCAGTGCCGCTGCGCGGCCTTTGAGACCTGTAAGTATAGTCATGAGGGGTGATAGTAGTACGGGAAAGACTATGTGGGCCAGATCACTGGGACCACATAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAGTAATGATGCCTGGTATAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATTCCAGCTATAAAGAGTTCTTGGATGAAGATAAGAATTCTGCACTAAAAAACTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGTGTTGA |
| Protein Sequence | MPPKRFLINSKNYFLTYPKCSLTKEEALSQLQNLATPTNKKYIKICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIEWRSAEGGSQSAYDAYAAALNAGSKSEALRVIKELAPQGFVFQFPLLDLNLDRDFTLPKEGYVSPFFSFFLDQVPEELEEWAAENVVSAAARPLRPVSIVMRGDSSTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKNWALKNAIFVTLEGPLYSGTNQSAAQASQEGDQASTC |
| NCBI Accession | YP_002124299.1 |
|---|---|
| Location | 2166-2462 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGAATGGAGATCTGCAGAGGGGGGGTCACAGTCAGCGTATGATGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTAA |
| Protein Sequence | MKMGNLIFTCSSSSKENTSAKITDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSNGDLQRGGHSQRMMLTPQRLTQAVSQRLLE |
References More References in PubMed
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Jeevalatha A, et al. 3 Biotech. 2021 Apr;11(4):203. doi: 10.1007/s13205-021-02752-5. Epub 2021 Mar 30. PMID: 33927993 |
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| 2 |
Arutselvan R, et al. Virusdisease. 2017 Sep;28(3):303-308. doi: 10.1007/s13337-017-0385-5. Epub 2017 Jun 13. PMID: 29291217 |
| 3 |
Pasumarthy KK, et al. Virol J. 2010 Jun 14;7:128. doi: 10.1186/1743-422X-7-128. PMID: 20546567 |
| 4 |
Jeevalatha A, et al. Funct Integr Genomics. 2023 Jun 30;23(3):215. doi: 10.1007/s10142-023-01138-5. PMID: 37389664 |
| 5 |
Genome editing (CRISPR-Cas)-mediated virus resistance in potato (Solanum tuberosum L.). Tiwari JK, et al. Mol Biol Rep. 2022 Dec;49(12):12109-12119. doi: 10.1007/s11033-022-07704-7. Epub 2022 Jun 28. PMID: 35764748 |
| 6 |
Recombinase polymerase amplification applied to plant virus detection and potential implications. Babu B, et al. Anal Biochem. 2018 Apr 1;546:72-77. doi: 10.1016/j.ab.2018.01.021. Epub 2018 Jan 31. PMID: 29408177 |
| 7 |
Rathore S, et al. Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0719-PDN. PMID: 30708408 |
| 8 |
Pasumarthy KK, et al. Virol J. 2011 Apr 18;8:178. doi: 10.1186/1743-422X-8-178. PMID: 21496351 |
| 9 |
Tomato auxin biosynthesis/signaling is reprogrammed by the geminivirus to enhance its pathogenicity. Vinutha T, et al. Planta. 2020 Sep 17;252(4):51. doi: 10.1007/s00425-020-03452-9. PMID: 32940767 |
| 10 |
Venkataravanappa V, et al. Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1. PMID: 35991698 |