Tomato leaf curl Karnataka virus 3

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004787135.1
Isolate India: Rauke, Punjab
Release date 2021/6/1
Submitter Swarnalatha,P., Venkataravanappa,V., Jalali,S., KrishnaReddy,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055134
ACCGGATGGCCGCGATTTTTTTGTGGGCCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTTTTGGTACCTTATTTAAACTTCGTCCCCAAGTAGTTCTTTTGCACCTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAGGGGCTGTGAAGGCCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGCGTTAGTGATGTTACTCGAGGAACTGGACTCACACATCGCGTGGGGAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTTTAGTTCGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGTGAAGTTTTTAACATGTTTGACAATGAACCGAGTACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACTTATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCAGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATACGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCGAGTTTTATATCATATGAAGTCCATACATCAATCGTCTGTTCCAATACATTATCCAACACATGATACACTGCTCGTATTACATTATATATTCCTATGACACCTAACATATCCAGGTACTTAAGGACCTGGGTTTTAAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGAATCTTGATGATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCGAATTTCCCAGGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCATGATCGTGGCAGTTGATCGATATGTAATACGAACACCCACACGGCAGATCAACTCGCCTCCTGCGAATGCTCTTCTTCTTCTTCTGCGGGAGCGATGTTTTCGCGACCGGAATAGAGTGGTTCTTCGAGTGTGATGAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCATTTTTTTCTTCGTCCAGATATTCCTTATAGCTGCTGTTTGGACCTTTATTGCACAGGAAGATAGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCGTACTTGGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCATGCATCATTGCTGTAGATCTTTGGGCTAAGGTCCAGATGACCACACAGATAATTATGTGAACCCAATGACCTGGCCCACATTGTTTTACCAGTACTACTATCACCCTCAATAACAATACTTATGGGTCTAATTGGCCGCGCAGCGGCATCGACAATGTTTTCGCAAGCCCACTCTTCAAGTTCTTCGGGAACTTGGTCGAAAGAAGAAGATGAAAAAGGAGAAATATACAGAGCTGGTGGATCCTGAAAATATCTATCTAAATTTGAATTTAAATTATGAAATTGAAGTACAAAGTCTCTGGGAGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTATTGTTTTTGCACTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTTGAAGTGGGTGTATGTATATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCACTTCGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGCTGCCATATTGACTTGGTCAATTGGAGTCTCTCAACTCTTTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCTAATGGCATAAATGTAAATATTTTACTTTAATTCAAAACCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_010084358.1
Location 143-499
Protein Name AV2
Coding Region ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAG
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQKTQNVQNVQESRRS

NCBI Accession YP_010084359.1
Location 303-1073
Protein Name AV1
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAGGGGCTGTGAAGGCCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGCGTTAGTGATGTTACTCGAGGAACTGGACTCACACATCGCGTGGGGAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTTTAGTTCGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGTGAAGTTTTTAACATGTTTGACAATGAACCGAGTACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACTTATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCAGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATACGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010084360.1
Location 1070-1474
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTCATAGGAATATATAATGTAATACGAGCAGTGTATCATGTGTTGGATAATGTATTGGAACAGACGATTGATGTATGGACTTCATATGATATAAAACTCGATATTTATTAA
Protein Sequence MDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGIYNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY

NCBI Accession YP_010084361.1
Location 1215-1619
Protein Name AC2
Coding Region ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTGCCGTGTGGGTGTTCGTATTACATATCGATCAACTGCCACGATCATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAA
Protein Sequence MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISINCHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTVQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESL

NCBI Accession YP_010084362.1
Location 1522-2607
Protein Name AC1
Coding Region ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCGAAGTGCTCTCTAACTAAAGAAGAAGCACTTTCCCAATTATTAAATATACATACACCCACTTCAAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCCAGAGACTTTGTACTTCAATTTCATAATTTAAATTCAAATTTAGATAGATATTTTCAGGATCCACCAGCTCTGTATATTTCTCCTTTTTCATCTTCTTCTTTCGACCAAGTTCCCGAAGAACTTGAAGAGTGGGCTTGCGAAAACATTGTCGATGCCGCTGCGCGGCCAATTAGACCCATAAGTATTGTTATTGAGGGTGATAGTAGTACTGGTAAAACAATGTGGGCCAGGTCATTGGGTTCACATAATTATCTGTGTGGTCATCTGGACCTTAGCCCAAAGATCTACAGCAATGATGCATGGTACAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACCAAGTACGGAAAGCCAGTCATGATTAAAGGTGGAATTCCCACTATCTTCCTGTGCAATAAAGGTCCAAACAGCAGCTATAAGGAATATCTGGACGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA
Protein Sequence MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNIHTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFVLQFHNLNSNLDRYFQDPPALYISPFSSSSFDQVPEELEEWACENIVDAAARPIRPISIVIEGDSSTGKTMWARSLGSHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPAEEEEEHSQEAS

NCBI Accession YP_010084363.1
Location 2157-2450
Protein Name AC4
Coding Region ATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA
Protein Sequence MGLLTCMCSSSSKESSSAKTIDSSTSHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575
2

Geographical distribution of tomato-infecting begomoviruses in major cucurbits in India: a diagnostic analysis using begomovirus species specific PCR.

Nayaka SN, et al.  Virusdisease. 2023 Sep;34(3):421-430. doi: 10.1007/s13337-023-00837-8. Epub 2023 Sep 8.

PMID: 37780909
3

Unraveling different begomoviruses, DNA satellites and cryptic species of Bemisia tabaci and their endosymbionts in vegetable ecosystem.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jan;174:105892. doi: 10.1016/j.micpath.2022.105892. Epub 2022 Dec 9.

PMID: 36502993
4

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101
5

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India.

Chakraborty S, et al.  Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A.

PMID: 30812767
6

Molecular characterization of begomovirus and DNA satellites associated with mosaic and leaf curl disease of Jamaica cherry (Muntingia calabura) in India: Uncovering a new host for chilli leaf curl India virus.

Prasad KSUD, et al.  Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16.

PMID: 39464737
7

Molecular investigations reveal bitter gourd crop is more susceptible to tomato leaf curl New Delhi virus infection in diverse crop cultivation practices.

Kiran GVNSM, et al.  3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17.

PMID: 34881163
8

A New Begomovirus Species in Association with Betasatellite Causing Tomato Leaf Curl Disease in Gandhinagar, India.

Rathore S, et al.  Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0719-PDN.

PMID: 30708408
9

First Report of the Bemisia tabaci B Biotype in India and an Associated Tomato leaf curl virus Disease Epidemic.

Banks GK, et al.  Plant Dis. 2001 Feb;85(2):231. doi: 10.1094/PDIS.2001.85.2.231C.

PMID: 30831961
10

Cross species transmission and recombination dynamics of chilli leaf curl virus: implications for host range expansion and LAMP-based detection.

Devaraj, et al.  3 Biotech. 2025 Aug;15(8):260. doi: 10.1007/s13205-025-04434-y. Epub 2025 Jul 19.

PMID: 40693173