Genus | Begomovirus |
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NCBI Assembly | GCF_004787135.1 |
Isolate | India: Rauke, Punjab |
Release date | 2021/6/1 |
Submitter | Swarnalatha,P., Venkataravanappa,V., Jalali,S., KrishnaReddy,M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_010084358.1 |
---|---|
Location | 143-499 |
Protein Name | AV2 |
Coding Region | ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAG |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQKTQNVQNVQESRRS |
NCBI Accession | YP_010084359.1 |
---|---|
Location | 303-1073 |
Protein Name | AV1 |
Coding Region | ATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAGGGGCTGTGAAGGCCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGCGTTAGTGATGTTACTCGAGGAACTGGACTCACACATCGCGTGGGGAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTTTAGTTCGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGTGAAGTTTTTAACATGTTTGACAATGAACCGAGTACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACTTATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCAGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATACGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession | YP_010084360.1 |
---|---|
Location | 1070-1474 |
Protein Name | AC3 |
Coding Region | ATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTCATAGGAATATATAATGTAATACGAGCAGTGTATCATGTGTTGGATAATGTATTGGAACAGACGATTGATGTATGGACTTCATATGATATAAAACTCGATATTTATTAA |
Protein Sequence | MDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGIYNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY |
NCBI Accession | YP_010084361.1 |
---|---|
Location | 1215-1619 |
Protein Name | AC2 |
Coding Region | ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTGCCGTGTGGGTGTTCGTATTACATATCGATCAACTGCCACGATCATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAA |
Protein Sequence | MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISINCHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTVQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESL |
NCBI Accession | YP_010084362.1 |
---|---|
Location | 1522-2607 |
Protein Name | AC1 |
Coding Region | ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCGAAGTGCTCTCTAACTAAAGAAGAAGCACTTTCCCAATTATTAAATATACATACACCCACTTCAAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCCAGAGACTTTGTACTTCAATTTCATAATTTAAATTCAAATTTAGATAGATATTTTCAGGATCCACCAGCTCTGTATATTTCTCCTTTTTCATCTTCTTCTTTCGACCAAGTTCCCGAAGAACTTGAAGAGTGGGCTTGCGAAAACATTGTCGATGCCGCTGCGCGGCCAATTAGACCCATAAGTATTGTTATTGAGGGTGATAGTAGTACTGGTAAAACAATGTGGGCCAGGTCATTGGGTTCACATAATTATCTGTGTGGTCATCTGGACCTTAGCCCAAAGATCTACAGCAATGATGCATGGTACAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACCAAGTACGGAAAGCCAGTCATGATTAAAGGTGGAATTCCCACTATCTTCCTGTGCAATAAAGGTCCAAACAGCAGCTATAAGGAATATCTGGACGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA |
Protein Sequence | MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNIHTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFVLQFHNLNSNLDRYFQDPPALYISPFSSSSFDQVPEELEEWACENIVDAAARPIRPISIVIEGDSSTGKTMWARSLGSHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPAEEEEEHSQEAS |
NCBI Accession | YP_010084363.1 |
---|---|
Location | 2157-2450 |
Protein Name | AC4 |
Coding Region | ATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA |
Protein Sequence | MGLLTCMCSSSSKESSSAKTIDSSTSHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY |
1 |
Naganur P, et al. Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490. PMID: 36771575 |
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2 |
Venkataravanappa V, et al. 3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2. PMID: 32550101 |
3 |
A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India. Chakraborty S, et al. Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A. PMID: 30812767 |
4 |
Rathore S, et al. Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0719-PDN. PMID: 30708408 |
5 |
Kiran GVNSM, et al. 3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17. PMID: 34881163 |
6 |
Banks GK, et al. Plant Dis. 2001 Feb;85(2):231. doi: 10.1094/PDIS.2001.85.2.231C. PMID: 30831961 |
7 |
Venkataravanappa V, et al. Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1. PMID: 35991698 |
8 |
Nayaka SN, et al. Virusdisease. 2023 Sep;34(3):421-430. doi: 10.1007/s13337-023-00837-8. Epub 2023 Sep 8. PMID: 37780909 |
9 |
Venkataravanappa V, et al. Microb Pathog. 2023 Jan;174:105892. doi: 10.1016/j.micpath.2022.105892. Epub 2022 Dec 9. PMID: 36502993 |
10 |
Molecular Characterization of a New Tomato Begomovirus from India. Shih SL, et al. Plant Dis. 2003 May;87(5):598. doi: 10.1094/PDIS.2003.87.5.598A. PMID: 30812965 |