Tomato leaf curl Karnataka virus 2

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004787115.1
Isolate India: Sonipet, Hariyana
Release date 2021/6/1
Submitter Swarnalatha,S., Venkataravanappa,V., Jalali,S., Krishnareddy,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055133
ACCGAATGGCCGCGCAAATTTTTACGTGGGCCCCTCAACGCATTAACTGACGAATGAAATTGCATCAATCACATGGCTTCTTCAAAGCTTAATTGTTTTGCGGACCTTTAAATATACTTGCTCACCAAGTATTGGATCCACAAACATGTGGGATCCATTATTGCACGAATTTCCAGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTGCAAGAGATAGAAAAGAACTATTCGCCAGACACAGTCGGATACGATCTTGTCCGAGATCTCATTCTTGTTCTGCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAGGGGATGTGAAGGCCCTTGCAAGGTGCAGTCCTTTGAATCAAGGCACGATGTCTCTCATATTGGGAAAGTGATGTGCGTTAGTGATGTTACCCGAGGAACTGGACTCACACATCGCGTAGGAAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACGAAGAACCATACTAACAGTGTTATGTTTTTTTTGGTACGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGGGAAGTTTTTAACATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACATATGCATGTAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAATATTAATAAATATTGAATTTTATTGAATATGATTGGTCTACATATACAACGTGATGTAATACATTCCATAATACATGATCAACTGATTTAATTACAGTGTTAATACTGATAACTCCTAAGTTATTTAAATACTTAAGAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGAACGGTGATGATGTCTTCCTTCATTAGGAATGGCCTGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTGTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGGCTAATGCAATGAAGTATGAACAGCCGCACGGTAGATCAACACGTCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATGGGAACCTGAGTACAATGGGCCTTCGAGGGTGACGAAGATCGCATTTTTTAATGCCCAGTTTTTTAGTGCAGAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATTATTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAAATAATTATGTGGTCCCAGTGATCTGGCCCACATAGTCTTCCCTGTCCTACTATCACCCTCAATGACTATACTTACGGGTCTCAAAGGCCGCGCAGCGGATCTCACCACATTCTCTGCAGCCCACTCCTCAAGTTCTTCGGGAACTTGATCAAAAGATGAAGATAAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAAACCTATCTAAATTAGAATTTAAATTATGAAATTGAAATAGAAAGTCTCTGGGAGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACTCCATGATCAAGGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTAAGGTCGAAGAATCTATTGTTTTTGCACTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTGGAAGTGGGTGTTTGGAGATTTAATAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACTTGAGATATGTGAGAAAATAGTTTTTCGCATTTATTCTAAAACGACTTGGCGGAGCCATAAAACTTGTCGTTTCGATCCGGTGTCTCTCAACTTTCTCTATGTAATTGGTGTCTGGAGTCCCATATATAGGTAAGACACCATATGGCAGAATTGTAATTTTGAAAAGAAAATTACTTTAATTCAAAATCCCTAAAGCGGCCATTCGTATAATATT

Gene Information

NCBI Accession YP_010084352.1
Location 146-502
Protein Name AV2
Coding Region ATGTGGGATCCATTATTGCACGAATTTCCAGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTGCAAGAGATAGAAAAGAACTATTCGCCAGACACAGTCGGATACGATCTTGTCCGAGATCTCATTCTTGTTCTGCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAG
Protein Sequence MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDKQADEQKTQNVQNVQKSRRA

NCBI Accession YP_010084353.1
Location 306-1076
Protein Name AV1
Coding Region ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAGGGGATGTGAAGGCCCTTGCAAGGTGCAGTCCTTTGAATCAAGGCACGATGTCTCTCATATTGGGAAAGTGATGTGCGTTAGTGATGTTACCCGAGGAACTGGACTCACACATCGCGTAGGAAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACGAAGAACCATACTAACAGTGTTATGTTTTTTTTGGTACGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGGGAAGTTTTTAACATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACATATGCATGTAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAA
Protein Sequence MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYACREQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession YP_010084354.1
Location 1079-1483
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTCTTAAGTATTTAAATAACTTAGGAGTTATCAGTATTAACACTGTAATTAAATCAGTTGATCATGTATTATGGAATGTATTACATCACGTTGTATATGTAGACCAATCATATTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMKEDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINTVIKSVDHVLWNVLHHVVYVDQSYSIKFNIY

NCBI Accession YP_010084355.1
Location 1224-1628
Protein Name AC2
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCATTGTACTCAGGTTCCCATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGTGTTGATCTACCGTGCGGCTGTTCATACTTCATTGCATTAGCCTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MRSSSPSKAHCTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHNHGFTHRGTHHCSSSTEWRVYLGDSKSPVFQDNRTPQQAIPNEGRHHHRSDTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGL

NCBI Accession YP_010084356.1
Location 1531-2616
Protein Name AC1
Coding Region ATGGCTCCGCCAAGTCGTTTTAGAATAAATGCGAAAAACTATTTTCTCACATATCTCAAGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTCCAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTTACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCCTTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCCAGAGACTTTCTATTTCAATTTCATAATTTAAATTCTAATTTAGATAGGTTTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTTATCTTCATCTTTTGATCAAGTTCCCGAAGAACTTGAGGAGTGGGCTGCAGAGAATGTGGTGAGATCCGCTGCGCGGCCTTTGAGACCCGTAAGTATAGTCATTGAGGGTGATAGTAGGACAGGGAAGACTATGTGGGCCAGATCACTGGGACCACATAATTATTTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAATAATGATGCCTGGTATAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATTCCAGCTATAAAGAGTTCTTGGATGAAGATAAGAATTCTGCACTAAAAAACTGGGCATTAAAAAATGCGATCTTCGTCACCCTCGAAGGCCCATTGTACTCAGGTTCCCATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGTGTTGA
Protein Sequence MAPPSRFRINAKNYFLTYLKCSLTKEEALSQLLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVLDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFLFQFHNLNSNLDRFFTPPMEVYVSPFLSSSFDQVPEELEEWAAENVVRSAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKNWALKNAIFVTLEGPLYSGSHQSAAQASQEGDQTSTC

NCBI Accession YP_010084357.1
Location 2166-2459
Protein Name AC4
Coding Region ATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTTACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCCTTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA
Protein Sequence MGLLTCMCSSSSKESSSAKTIDSSTLHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSTQGPKLRPSIY

References More References in PubMed

1

First Report of the Bemisia tabaci B Biotype in India and an Associated Tomato leaf curl virus Disease Epidemic.

Banks GK, et al.  Plant Dis. 2001 Feb;85(2):231. doi: 10.1094/PDIS.2001.85.2.231C.

PMID: 30831961
2

Molecular characterization of novel bipartite begomovirus associated with enation leaf disease of Garden croton (Codiaeum variegatum L.).

Venkataravanappa V, et al.  Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1.

PMID: 35991698
3

A Geminivirus-Satellite Complex is Associated with Leaf Deformity of Mentha (Mint) Plants in Punjab.

Borah BK, et al.  Indian J Virol. 2010 Oct;21(2):103-9. doi: 10.1007/s13337-010-0018-8. Epub 2011 Jan 11.

PMID: 23637488
4

Survey, symptomatology, transmission, host range and characterization of begomovirus associated with yellow mosaic disease of ridge gourd in southern India.

Patil CV, et al.  Virusdisease. 2017 Jun;28(2):146-155. doi: 10.1007/s13337-017-0376-6. Epub 2017 May 15.

PMID: 28770240