Genus | Begomovirus |
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NCBI Assembly | GCF_004787115.1 |
Isolate | India: Sonipet, Hariyana |
Release date | 2021/6/1 |
Submitter | Swarnalatha,S., Venkataravanappa,V., Jalali,S., Krishnareddy,M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_010084352.1 |
---|---|
Location | 146-502 |
Protein Name | AV2 |
Coding Region | ATGTGGGATCCATTATTGCACGAATTTCCAGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTGCAAGAGATAGAAAAGAACTATTCGCCAGACACAGTCGGATACGATCTTGTCCGAGATCTCATTCTTGTTCTGCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAG |
Protein Sequence | MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDKQADEQKTQNVQNVQKSRRA |
NCBI Accession | YP_010084353.1 |
---|---|
Location | 306-1076 |
Protein Name | AV1 |
Coding Region | ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAGGGGATGTGAAGGCCCTTGCAAGGTGCAGTCCTTTGAATCAAGGCACGATGTCTCTCATATTGGGAAAGTGATGTGCGTTAGTGATGTTACCCGAGGAACTGGACTCACACATCGCGTAGGAAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACGAAGAACCATACTAACAGTGTTATGTTTTTTTTGGTACGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGGGAAGTTTTTAACATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACATATGCATGTAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAA |
Protein Sequence | MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYACREQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKVRSYFYDSVTN |
NCBI Accession | YP_010084354.1 |
---|---|
Location | 1079-1483 |
Protein Name | AC3 |
Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTCTTAAGTATTTAAATAACTTAGGAGTTATCAGTATTAACACTGTAATTAAATCAGTTGATCATGTATTATGGAATGTATTACATCACGTTGTATATGTAGACCAATCATATTCAATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGEPITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMKEDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINTVIKSVDHVLWNVLHHVVYVDQSYSIKFNIY |
NCBI Accession | YP_010084355.1 |
---|---|
Location | 1224-1628 |
Protein Name | AC2 |
Coding Region | ATGCGATCTTCGTCACCCTCGAAGGCCCATTGTACTCAGGTTCCCATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGTGTTGATCTACCGTGCGGCTGTTCATACTTCATTGCATTAGCCTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA |
Protein Sequence | MRSSSPSKAHCTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHNHGFTHRGTHHCSSSTEWRVYLGDSKSPVFQDNRTPQQAIPNEGRHHHRSDTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGL |
NCBI Accession | YP_010084356.1 |
---|---|
Location | 1531-2616 |
Protein Name | AC1 |
Coding Region | ATGGCTCCGCCAAGTCGTTTTAGAATAAATGCGAAAAACTATTTTCTCACATATCTCAAGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTCCAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTTACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCCTTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCCAGAGACTTTCTATTTCAATTTCATAATTTAAATTCTAATTTAGATAGGTTTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTTATCTTCATCTTTTGATCAAGTTCCCGAAGAACTTGAGGAGTGGGCTGCAGAGAATGTGGTGAGATCCGCTGCGCGGCCTTTGAGACCCGTAAGTATAGTCATTGAGGGTGATAGTAGGACAGGGAAGACTATGTGGGCCAGATCACTGGGACCACATAATTATTTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAATAATGATGCCTGGTATAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATTCCAGCTATAAAGAGTTCTTGGATGAAGATAAGAATTCTGCACTAAAAAACTGGGCATTAAAAAATGCGATCTTCGTCACCCTCGAAGGCCCATTGTACTCAGGTTCCCATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGTGTTGA |
Protein Sequence | MAPPSRFRINAKNYFLTYLKCSLTKEEALSQLLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVLDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFLFQFHNLNSNLDRFFTPPMEVYVSPFLSSSFDQVPEELEEWAAENVVRSAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKNWALKNAIFVTLEGPLYSGSHQSAAQASQEGDQTSTC |
NCBI Accession | YP_010084357.1 |
---|---|
Location | 2166-2459 |
Protein Name | AC4 |
Coding Region | ATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTTACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCCTTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA |
Protein Sequence | MGLLTCMCSSSSKESSSAKTIDSSTLHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSTQGPKLRPSIY |
1 |
Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus. Chatchawankanphanich O, et al. Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637. PMID: 18944261 |
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2 |
Venkataravanappa V, et al. 3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2. PMID: 32550101 |
3 |
Venkataravanappa V, et al. Iran J Biotechnol. 2019 Jan 11;17(1):e2134. doi: 10.21859/ijb.2134. eCollection 2019 Jan. PMID: 31457044 |
4 |
A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India. Chakraborty S, et al. Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A. PMID: 30812767 |
5 |
Rathore S, et al. Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0719-PDN. PMID: 30708408 |
6 |
Chakraborty S, et al. Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485. PMID: 18943612 |
7 |
Banks GK, et al. Plant Dis. 2001 Feb;85(2):231. doi: 10.1094/PDIS.2001.85.2.231C. PMID: 30831961 |
8 |
Venkataravanappa V, et al. Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1. PMID: 35991698 |
9 |
Venkataravanappa V, et al. Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28. PMID: 37119939 |
10 |
Venkataravanappa V, et al. Microb Pathog. 2023 Jan;174:105892. doi: 10.1016/j.micpath.2022.105892. Epub 2022 Dec 9. PMID: 36502993 |