Tomato leaf curl Karnataka virus 2

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004787115.1
Isolate India: Sonipet, Hariyana
Release date 2021/6/1
Submitter Swarnalatha,S., Venkataravanappa,V., Jalali,S., Krishnareddy,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055133
ACCGAATGGCCGCGCAAATTTTTACGTGGGCCCCTCAACGCATTAACTGACGAATGAAATTGCATCAATCACATGGCTTCTTCAAAGCTTAATTGTTTTGCGGACCTTTAAATATACTTGCTCACCAAGTATTGGATCCACAAACATGTGGGATCCATTATTGCACGAATTTCCAGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTGCAAGAGATAGAAAAGAACTATTCGCCAGACACAGTCGGATACGATCTTGTCCGAGATCTCATTCTTGTTCTGCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAGGGGATGTGAAGGCCCTTGCAAGGTGCAGTCCTTTGAATCAAGGCACGATGTCTCTCATATTGGGAAAGTGATGTGCGTTAGTGATGTTACCCGAGGAACTGGACTCACACATCGCGTAGGAAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACGAAGAACCATACTAACAGTGTTATGTTTTTTTTGGTACGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGGGAAGTTTTTAACATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACATATGCATGTAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAATATTAATAAATATTGAATTTTATTGAATATGATTGGTCTACATATACAACGTGATGTAATACATTCCATAATACATGATCAACTGATTTAATTACAGTGTTAATACTGATAACTCCTAAGTTATTTAAATACTTAAGAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGAACGGTGATGATGTCTTCCTTCATTAGGAATGGCCTGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTGTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGGCTAATGCAATGAAGTATGAACAGCCGCACGGTAGATCAACACGTCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATGGGAACCTGAGTACAATGGGCCTTCGAGGGTGACGAAGATCGCATTTTTTAATGCCCAGTTTTTTAGTGCAGAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATTATTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAAATAATTATGTGGTCCCAGTGATCTGGCCCACATAGTCTTCCCTGTCCTACTATCACCCTCAATGACTATACTTACGGGTCTCAAAGGCCGCGCAGCGGATCTCACCACATTCTCTGCAGCCCACTCCTCAAGTTCTTCGGGAACTTGATCAAAAGATGAAGATAAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAAACCTATCTAAATTAGAATTTAAATTATGAAATTGAAATAGAAAGTCTCTGGGAGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACTCCATGATCAAGGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTAAGGTCGAAGAATCTATTGTTTTTGCACTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTGGAAGTGGGTGTTTGGAGATTTAATAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACTTGAGATATGTGAGAAAATAGTTTTTCGCATTTATTCTAAAACGACTTGGCGGAGCCATAAAACTTGTCGTTTCGATCCGGTGTCTCTCAACTTTCTCTATGTAATTGGTGTCTGGAGTCCCATATATAGGTAAGACACCATATGGCAGAATTGTAATTTTGAAAAGAAAATTACTTTAATTCAAAATCCCTAAAGCGGCCATTCGTATAATATT

Gene Information

NCBI Accession YP_010084352.1
Location 146-502
Protein Name AV2
Coding Region ATGTGGGATCCATTATTGCACGAATTTCCAGAAAGCGTTCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTGCAAGAGATAGAAAAGAACTATTCGCCAGACACAGTCGGATACGATCTTGTCCGAGATCTCATTCTTGTTCTGCGAGCAAAGAACTATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAG
Protein Sequence MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVLRAKNYGEATSRYHHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDKQADEQKTQNVQNVQKSRRA

NCBI Accession YP_010084353.1
Location 306-1076
Protein Name AV1
Coding Region ATGGCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAAGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGAAGTCCCGACGTGCCTAGGGGATGTGAAGGCCCTTGCAAGGTGCAGTCCTTTGAATCAAGGCACGATGTCTCTCATATTGGGAAAGTGATGTGCGTTAGTGATGTTACCCGAGGAACTGGACTCACACATCGCGTAGGAAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACGAAGAACCATACTAACAGTGTTATGTTTTTTTTGGTACGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGGGAAGTTTTTAACATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACATATGCATGTAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAA
Protein Sequence MAKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYACREQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession YP_010084354.1
Location 1079-1483
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTCTTAAGTATTTAAATAACTTAGGAGTTATCAGTATTAACACTGTAATTAAATCAGTTGATCATGTATTATGGAATGTATTACATCACGTTGTATATGTAGACCAATCATATTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAQNGVFIWEIQNPLYFKITEHHNRPFLMKEDIITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINTVIKSVDHVLWNVLHHVVYVDQSYSIKFNIY

NCBI Accession YP_010084355.1
Location 1224-1628
Protein Name AC2
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCATTGTACTCAGGTTCCCATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGTGTTGATCTACCGTGCGGCTGTTCATACTTCATTGCATTAGCCTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCACAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTGTATTTCAAGATAACAGAACACCACAACAGGCCATTCCTAATGAAGGAAGACATCATCACCGTTCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MRSSSPSKAHCTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHNHGFTHRGTHHCSSSTEWRVYLGDSKSPVFQDNRTPQQAIPNEGRHHHRSDTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGL

NCBI Accession YP_010084356.1
Location 1531-2616
Protein Name AC1
Coding Region ATGGCTCCGCCAAGTCGTTTTAGAATAAATGCGAAAAACTATTTTCTCACATATCTCAAGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTCCAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTTACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCCTTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCCAGAGACTTTCTATTTCAATTTCATAATTTAAATTCTAATTTAGATAGGTTTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTTATCTTCATCTTTTGATCAAGTTCCCGAAGAACTTGAGGAGTGGGCTGCAGAGAATGTGGTGAGATCCGCTGCGCGGCCTTTGAGACCCGTAAGTATAGTCATTGAGGGTGATAGTAGGACAGGGAAGACTATGTGGGCCAGATCACTGGGACCACATAATTATTTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAATAATGATGCCTGGTATAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATTCCAGCTATAAAGAGTTCTTGGATGAAGATAAGAATTCTGCACTAAAAAACTGGGCATTAAAAAATGCGATCTTCGTCACCCTCGAAGGCCCATTGTACTCAGGTTCCCATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGTGTTGA
Protein Sequence MAPPSRFRINAKNYFLTYLKCSLTKEEALSQLLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVLDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFLFQFHNLNSNLDRFFTPPMEVYVSPFLSSSFDQVPEELEEWAAENVVRSAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKNWALKNAIFVTLEGPLYSGSHQSAAQASQEGDQTSTC

NCBI Accession YP_010084357.1
Location 2166-2459
Protein Name AC4
Coding Region ATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTTACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCCTTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA
Protein Sequence MGLLTCMCSSSSKESSSAKTIDSSTLHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSTQGPKLRPSIY

References More References in PubMed

1

Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus.

Chatchawankanphanich O, et al.  Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637.

PMID: 18944261
2

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101
3

Association of Tomato Leaf Curl New Delhi Virus, Betasatellite, and Alphasatellite with Mosaic Disease of Spine Gourd (Momordica dioica Roxb. Willd) in India.

Venkataravanappa V, et al.  Iran J Biotechnol. 2019 Jan 11;17(1):e2134. doi: 10.21859/ijb.2134. eCollection 2019 Jan.

PMID: 31457044
4

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India.

Chakraborty S, et al.  Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A.

PMID: 30812767
5

A New Begomovirus Species in Association with Betasatellite Causing Tomato Leaf Curl Disease in Gandhinagar, India.

Rathore S, et al.  Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0719-PDN.

PMID: 30708408
6

Tomato leaf curl Gujarat virus, a New Begomovirus Species Causing a Severe Leaf Curl Disease of Tomato in Varanasi, India.

Chakraborty S, et al.  Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485.

PMID: 18943612
7

First Report of the Bemisia tabaci B Biotype in India and an Associated Tomato leaf curl virus Disease Epidemic.

Banks GK, et al.  Plant Dis. 2001 Feb;85(2):231. doi: 10.1094/PDIS.2001.85.2.231C.

PMID: 30831961
8

Molecular characterization of novel bipartite begomovirus associated with enation leaf disease of Garden croton (Codiaeum variegatum L.).

Venkataravanappa V, et al.  Virusdisease. 2022 Jun;33(2):194-207. doi: 10.1007/s13337-022-00772-0. Epub 2022 Jul 1.

PMID: 35991698
9

Diversity and phylogeography of begomoviruses and DNA satellites associated with the leaf curl and mosaic disease complex of eggplant.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jul;180:106127. doi: 10.1016/j.micpath.2023.106127. Epub 2023 Apr 28.

PMID: 37119939
10

Unraveling different begomoviruses, DNA satellites and cryptic species of Bemisia tabaci and their endosymbionts in vegetable ecosystem.

Venkataravanappa V, et al.  Microb Pathog. 2023 Jan;174:105892. doi: 10.1016/j.micpath.2022.105892. Epub 2022 Dec 9.

PMID: 36502993