Tomato leaf curl Karnataka virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840185.1
Release date 2015/2/12
Submitter Chatchawankanphanich,O., Chiang,B.-T., Green,S.K., Singh,S.J., Mehta,P., Maxwell,D.P.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003897
ACCGGATGGCCGCGAATTTTTTTGTGGGCCCCTCAACGCACTAACTGACAAGGACATGCTAACCAATCACATGACGCGCTCAAAGCTTAATTGTTTTGTGGTCCCCTATTTAAACTTCGGCACCAAGTATTGTATTTTGCACTATGTGGGATCCATTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAATTAGTAGAAAAGACCTATTCTCCCGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGCAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACCGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCATACGAACAGTGTCATGTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAAAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAATATTGAATTTTATTGAACATGTTTGGTCTACATATACAACGTGGTGTAATACATTCCATAATACATGATCAACGGCTCTAATTACATTGTTAATACTGATAACTCCTAAATTATTTAAGTACTTAAGCACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTAAGGTCATCCAGATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTGATGATGTCTTGGTTCATCAGGAATGGCCGGTTGTGATGCTCTGTTATCTTGAAATATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGACAGGCTAATGCTATGAAGTAAGAACAGCCGCACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGTACCTGAGTAGAGTGGGCCCTCGGGGGTGACGAAGGTCGCATTCTTTATAGCCCAGTTTTTTAGTTTAGAATTCTTTTCTTCATCCAAGAATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAATTACGTTATACCACGCATCATTACTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTTTCCCCGTCCTACTGTCACCCTCAATCACTATACTTACGGGCCTCAAAGGCCGCGCAGCGGCATTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAACCTGATCAAAGGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACATAATCTTTGGGAGCCTTCTCCCTTAATATATTGAGGGCCTCAATTTTTGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTAAGGTCGAAGAATCTATTGTTCTTGCACTGGAATTTTCCTTCGAACTGGATGAGAACATGTAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTAGAAGTTGGTGTTTGGAGATTTAAGAATTGGGAAAGTGCTTCTTCTTTAGTGAGGGAGCACTTGGGATAAGTGAGAAAATAATTTTTTGCATTTAATTTAAACCGATTTGGGGCTGCCATGTTGACTTAGTCAATCGGTGTCTCTCAATTTGTTCTATGTATCGGTGTACTGGAGTCCTATATATATGGAGACTCTAATGGCATAATTGTAATAATAGAACTTTAATTTGAAATTCAAAATAAAAGGCTAAACGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_632008.1
Location 144-500
Gene Name V2
Protein Name precoat protein
Coding Region ATGTGGGATCCATTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAATTAGTAGAAAAGACCTATTCTCCCGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP

NCBI Accession NP_632009.1
Location 304-1074
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGCAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACCGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCATACGAACAGTGTCATGTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAAAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAVAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession NP_632010.1
Location 1071-1475
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAGACCCAAGTGCTTAAGTACTTAAATAATTTAGGAGTTATCAGTATTAACAATGTAATTAGAGCCGTTGATCATGTATTATGGAATGTATTACACCACGTTGTATATGTAGACCAAACATGTTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDIITVQVQFNHNLRKVLGIHKCFLVYRIWMTLQPPTGRFLRVFKTQVLKYLNNLGVISINNVIRAVDHVLWNVLHHVVYVDQTCSIKFNIY

NCBI Accession NP_632011.1
Location 1216-1620
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGCGGCTGTTCTTACTTCATAGCATTAGCCTGTCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA
Protein Sequence MRPSSPPRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGI

NCBI Accession NP_632012.1
Location 1523-2608
Gene Name rep
Protein Name replication-associated protein
Coding Region ATGGCAGCCCCAAATCGGTTTAAATTAAATGCAAAAAATTATTTTCTCACTTATCCCAAGTGCTCCCTCACTAAAGAAGAAGCACTTTCCCAATTCTTAAATCTCCAAACACCAACTTCTAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAAGGGAGAAGGCTCCCAAAGATTATGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCCTTTGATCAGGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAATGCCGCTGCGCGGCCTTTGAGGCCCGTAAGTATAGTGATTGAGGGTGACAGTAGGACGGGGAAAACAATGTGGGCCAGATCACTGGGACCACATAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTCTACAGTAATGATGCGTGGTATAACGTAATTGATGACGTAGACCCCAACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATAGAAAGTACAATAAGCCAGTTCAAATTAAAGGCGGAATTCCCACAATCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATTCTTGGATGAAGAAAAGAATTCTAAACTAAAAAACTGGGCTATAAAGAATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA
Protein Sequence MAAPNRFKLNAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVNAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPNYLKHFKEFMGAQRDWQSNRKYNKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSKLKNWAIKNATFVTPEGPLYSGTNQSAAQASQEGDQTSTS

NCBI Accession NP_632013.1
Location 2158-2451
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAA
Protein Sequence MGLLTYMFSSSSKENSSARTIDSSTLPPQPGQHISIRTFRELKAQAMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGQKLRPSIY

References More References in PubMed

1

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575

2

Molecular analysis, infectivity and host range of Tomato leaf curl Karnataka virus associated with Corchorus yellow vein mosaic betasatellite.

Dokka N, et al.  Virus Res. 2021 Oct 2;303:198521. doi: 10.1016/j.virusres.2021.198521. Epub 2021 Jul 24.

PMID: 34314770

3

Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus.

Chatchawankanphanich O, et al.  Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637.

PMID: 18944261

4

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101

5

Molecular investigations reveal bitter gourd crop is more susceptible to tomato leaf curl New Delhi virus infection in diverse crop cultivation practices.

Kiran GVNSM, et al.  3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17.

PMID: 34881163

6

Association of Tomato Leaf Curl New Delhi Virus, Betasatellite, and Alphasatellite with Mosaic Disease of Spine Gourd (Momordica dioica Roxb. Willd) in India.

Venkataravanappa V, et al.  Iran J Biotechnol. 2019 Jan 11;17(1):e2134. doi: 10.21859/ijb.2134. eCollection 2019 Jan.

PMID: 31457044

7

Molecular evidence for the occurrence of tomato leaf curl New Delhi virus on chayote (Sechium edule) in southern India.

Nagendran K, et al.  Virusdisease. 2017 Dec;28(4):425-429. doi: 10.1007/s13337-017-0403-7. Epub 2017 Oct 9.

PMID: 29291235

8

Tomato leaf curl Gujarat virus, a New Begomovirus Species Causing a Severe Leaf Curl Disease of Tomato in Varanasi, India.

Chakraborty S, et al.  Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485.

PMID: 18943612

9

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India.

Chakraborty S, et al.  Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A.

PMID: 30812767

10

A New Begomovirus Species in Association with Betasatellite Causing Tomato Leaf Curl Disease in Gandhinagar, India.

Rathore S, et al.  Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0719-PDN.

PMID: 30708408