Tomato leaf curl Karnataka virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840185.1
Release date 2015/2/12
Submitter Chatchawankanphanich,O., Chiang,B.-T., Green,S.K., Singh,S.J., Mehta,P., Maxwell,D.P.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003897
ACCGGATGGCCGCGAATTTTTTTGTGGGCCCCTCAACGCACTAACTGACAAGGACATGCTAACCAATCACATGACGCGCTCAAAGCTTAATTGTTTTGTGGTCCCCTATTTAAACTTCGGCACCAAGTATTGTATTTTGCACTATGTGGGATCCATTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAATTAGTAGAAAAGACCTATTCTCCCGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGCAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACCGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCATACGAACAGTGTCATGTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAAAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAATATTGAATTTTATTGAACATGTTTGGTCTACATATACAACGTGGTGTAATACATTCCATAATACATGATCAACGGCTCTAATTACATTGTTAATACTGATAACTCCTAAATTATTTAAGTACTTAAGCACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTAAGGTCATCCAGATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTGATGATGTCTTGGTTCATCAGGAATGGCCGGTTGTGATGCTCTGTTATCTTGAAATATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGACAGGCTAATGCTATGAAGTAAGAACAGCCGCACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGTACCTGAGTAGAGTGGGCCCTCGGGGGTGACGAAGGTCGCATTCTTTATAGCCCAGTTTTTTAGTTTAGAATTCTTTTCTTCATCCAAGAATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAATTACGTTATACCACGCATCATTACTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTTTCCCCGTCCTACTGTCACCCTCAATCACTATACTTACGGGCCTCAAAGGCCGCGCAGCGGCATTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAACCTGATCAAAGGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACATAATCTTTGGGAGCCTTCTCCCTTAATATATTGAGGGCCTCAATTTTTGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTAAGGTCGAAGAATCTATTGTTCTTGCACTGGAATTTTCCTTCGAACTGGATGAGAACATGTAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTAGAAGTTGGTGTTTGGAGATTTAAGAATTGGGAAAGTGCTTCTTCTTTAGTGAGGGAGCACTTGGGATAAGTGAGAAAATAATTTTTTGCATTTAATTTAAACCGATTTGGGGCTGCCATGTTGACTTAGTCAATCGGTGTCTCTCAATTTGTTCTATGTATCGGTGTACTGGAGTCCTATATATATGGAGACTCTAATGGCATAATTGTAATAATAGAACTTTAATTTGAAATTCAAAATAAAAGGCTAAACGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_632008.1
Location 144-500
Gene Name V2
Protein Name precoat protein
Coding Region ATGTGGGATCCATTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAATTAGTAGAAAAGACCTATTCTCCCGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP

NCBI Accession NP_632009.1
Location 304-1074
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGCAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACCGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCATACGAACAGTGTCATGTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAAAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAVAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession NP_632010.1
Location 1071-1475
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAGACCCAAGTGCTTAAGTACTTAAATAATTTAGGAGTTATCAGTATTAACAATGTAATTAGAGCCGTTGATCATGTATTATGGAATGTATTACACCACGTTGTATATGTAGACCAAACATGTTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDIITVQVQFNHNLRKVLGIHKCFLVYRIWMTLQPPTGRFLRVFKTQVLKYLNNLGVISINNVIRAVDHVLWNVLHHVVYVDQTCSIKFNIY

NCBI Accession NP_632011.1
Location 1216-1620
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGCGGCTGTTCTTACTTCATAGCATTAGCCTGTCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA
Protein Sequence MRPSSPPRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGI

NCBI Accession NP_632012.1
Location 1523-2608
Gene Name rep
Protein Name replication-associated protein
Coding Region ATGGCAGCCCCAAATCGGTTTAAATTAAATGCAAAAAATTATTTTCTCACTTATCCCAAGTGCTCCCTCACTAAAGAAGAAGCACTTTCCCAATTCTTAAATCTCCAAACACCAACTTCTAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAAGGGAGAAGGCTCCCAAAGATTATGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCCTTTGATCAGGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAATGCCGCTGCGCGGCCTTTGAGGCCCGTAAGTATAGTGATTGAGGGTGACAGTAGGACGGGGAAAACAATGTGGGCCAGATCACTGGGACCACATAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTCTACAGTAATGATGCGTGGTATAACGTAATTGATGACGTAGACCCCAACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATAGAAAGTACAATAAGCCAGTTCAAATTAAAGGCGGAATTCCCACAATCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATTCTTGGATGAAGAAAAGAATTCTAAACTAAAAAACTGGGCTATAAAGAATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA
Protein Sequence MAAPNRFKLNAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVNAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPNYLKHFKEFMGAQRDWQSNRKYNKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSKLKNWAIKNATFVTPEGPLYSGTNQSAAQASQEGDQTSTS

NCBI Accession NP_632013.1
Location 2158-2451
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAA
Protein Sequence MGLLTYMFSSSSKENSSARTIDSSTLPPQPGQHISIRTFRELKAQAMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGQKLRPSIY

References More References in PubMed

1

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575
2

Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana.

Vo TTB, et al.  Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907.

PMID: 38138051
3

Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus.

Chatchawankanphanich O, et al.  Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637.

PMID: 18944261
4

Molecular analysis, infectivity and host range of Tomato leaf curl Karnataka virus associated with Corchorus yellow vein mosaic betasatellite.

Dokka N, et al.  Virus Res. 2021 Oct 2;303:198521. doi: 10.1016/j.virusres.2021.198521. Epub 2021 Jul 24.

PMID: 34314770
5

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101
6

Endophyte profiling of tomato leaf curl virus (ToLCV) resistant and susceptible tomato genotypes: Insights into microbial diversity and growth promotion.

Chethan D, et al.  Sci Rep. 2026 Jan 25;16(1):5348. doi: 10.1038/s41598-026-37677-7.

PMID: 41582242
7

Identification and validation of QTLs associated with resistance to tomato leaf curl Bangalore virus disease using QTL-seq analysis in tomato (Solanum spp.).

Chidambara B, et al.  Mol Biol Rep. 2025 Dec 11;53(1):187. doi: 10.1007/s11033-025-11355-9.

PMID: 41379240
8

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India.

Chakraborty S, et al.  Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A.

PMID: 30812767
9

Molecular investigations reveal bitter gourd crop is more susceptible to tomato leaf curl New Delhi virus infection in diverse crop cultivation practices.

Kiran GVNSM, et al.  3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17.

PMID: 34881163
10

Tomato leaf curl Gujarat virus, a New Begomovirus Species Causing a Severe Leaf Curl Disease of Tomato in Varanasi, India.

Chakraborty S, et al.  Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485.

PMID: 18943612