Genus | Begomovirus |
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NCBI Assembly | GCF_000840185.1 |
Release date | 2015/2/12 |
Submitter | Chatchawankanphanich,O., Chiang,B.-T., Green,S.K., Singh,S.J., Mehta,P., Maxwell,D.P. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_632008.1 |
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Location | 144-500 |
Gene Name | V2 |
Protein Name | precoat protein |
Coding Region | ATGTGGGATCCATTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAATTAGTAGAAAAGACCTATTCTCCCGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP |
NCBI Accession | NP_632009.1 |
---|---|
Location | 304-1074 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGCAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACCGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCATACGAACAGTGTCATGTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAAAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYVSRAVAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession | NP_632010.1 |
---|---|
Location | 1071-1475 |
Gene Name | C3 |
Protein Name | C3 protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAGACCCAAGTGCTTAAGTACTTAAATAATTTAGGAGTTATCAGTATTAACAATGTAATTAGAGCCGTTGATCATGTATTATGGAATGTATTACACCACGTTGTATATGTAGACCAAACATGTTCAATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDIITVQVQFNHNLRKVLGIHKCFLVYRIWMTLQPPTGRFLRVFKTQVLKYLNNLGVISINNVIRAVDHVLWNVLHHVVYVDQTCSIKFNIY |
NCBI Accession | NP_632011.1 |
---|---|
Location | 1216-1620 |
Gene Name | C2 |
Protein Name | C2 protein |
Coding Region | ATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGCGGCTGTTCTTACTTCATAGCATTAGCCTGTCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA |
Protein Sequence | MRPSSPPRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGI |
NCBI Accession | NP_632012.1 |
---|---|
Location | 1523-2608 |
Gene Name | rep |
Protein Name | replication-associated protein |
Coding Region | ATGGCAGCCCCAAATCGGTTTAAATTAAATGCAAAAAATTATTTTCTCACTTATCCCAAGTGCTCCCTCACTAAAGAAGAAGCACTTTCCCAATTCTTAAATCTCCAAACACCAACTTCTAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAAGGGAGAAGGCTCCCAAAGATTATGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCCTTTGATCAGGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAATGCCGCTGCGCGGCCTTTGAGGCCCGTAAGTATAGTGATTGAGGGTGACAGTAGGACGGGGAAAACAATGTGGGCCAGATCACTGGGACCACATAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTCTACAGTAATGATGCGTGGTATAACGTAATTGATGACGTAGACCCCAACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATAGAAAGTACAATAAGCCAGTTCAAATTAAAGGCGGAATTCCCACAATCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATTCTTGGATGAAGAAAAGAATTCTAAACTAAAAAACTGGGCTATAAAGAATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA |
Protein Sequence | MAAPNRFKLNAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVNAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPNYLKHFKEFMGAQRDWQSNRKYNKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSKLKNWAIKNATFVTPEGPLYSGTNQSAAQASQEGDQTSTS |
NCBI Accession | NP_632013.1 |
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Location | 2158-2451 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAA |
Protein Sequence | MGLLTYMFSSSSKENSSARTIDSSTLPPQPGQHISIRTFRELKAQAMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGQKLRPSIY |
1 |
Naganur P, et al. Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490. PMID: 36771575 |
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2 |
Dokka N, et al. Virus Res. 2021 Oct 2;303:198521. doi: 10.1016/j.virusres.2021.198521. Epub 2021 Jul 24. PMID: 34314770 |
3 |
Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus. Chatchawankanphanich O, et al. Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637. PMID: 18944261 |
4 |
Venkataravanappa V, et al. 3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2. PMID: 32550101 |
5 |
Kiran GVNSM, et al. 3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17. PMID: 34881163 |
6 |
Venkataravanappa V, et al. Iran J Biotechnol. 2019 Jan 11;17(1):e2134. doi: 10.21859/ijb.2134. eCollection 2019 Jan. PMID: 31457044 |
7 |
Nagendran K, et al. Virusdisease. 2017 Dec;28(4):425-429. doi: 10.1007/s13337-017-0403-7. Epub 2017 Oct 9. PMID: 29291235 |
8 |
Chakraborty S, et al. Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485. PMID: 18943612 |
9 |
A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India. Chakraborty S, et al. Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A. PMID: 30812767 |
10 |
Rathore S, et al. Plant Dis. 2014 Mar;98(3):428. doi: 10.1094/PDIS-07-13-0719-PDN. PMID: 30708408 |