Tomato leaf curl Karnataka virus

Basic Information

Genus	Begomovirus
NCBI Assembly	GCF_000840185.1
Release date	2015/2/12
Submitter	Chatchawankanphanich,O., Chiang,B.-T., Green,S.K., Singh,S.J., Mehta,P., Maxwell,D.P.
Download	Genome \|GFF3 \|PEP \|CDS

Genomic Organization

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Genome

NC_003897

ACCGGATGGCCGCGAATTTTTTTGTGGGCCCCTCAACGCACTAACTGACAAGGACATGCTAACCAATCACATGACGCGCTCAAAGCTTAATTGTTTTGTGGTCCCCTATTTAAACTTCGGCACCAAGTATTGTATTTTGCACTATGTGGGATCCATTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAATTAGTAGAAAAGACCTATTCTCCCGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGCAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACCGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCATACGAACAGTGTCATGTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAAAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAATATTGAATTTTATTGAACATGTTTGGTCTACATATACAACGTGGTGTAATACATTCCATAATACATGATCAACGGCTCTAATTACATTGTTAATACTGATAACTCCTAAATTATTTAAGTACTTAAGCACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTAAGGTCATCCAGATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTGATGATGTCTTGGTTCATCAGGAATGGCCGGTTGTGATGCTCTGTTATCTTGAAATATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGACAGGCTAATGCTATGAAGTAAGAACAGCCGCACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGTACCTGAGTAGAGTGGGCCCTCGGGGGTGACGAAGGTCGCATTCTTTATAGCCCAGTTTTTTAGTTTAGAATTCTTTTCTTCATCCAAGAATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAATTACGTTATACCACGCATCATTACTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTTTCCCCGTCCTACTGTCACCCTCAATCACTATACTTACGGGCCTCAAAGGCCGCGCAGCGGCATTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAACCTGATCAAAGGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACATAATCTTTGGGAGCCTTCTCCCTTAATATATTGAGGGCCTCAATTTTTGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTAAGGTCGAAGAATCTATTGTTCTTGCACTGGAATTTTCCTTCGAACTGGATGAGAACATGTAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTAGAAGTTGGTGTTTGGAGATTTAAGAATTGGGAAAGTGCTTCTTCTTTAGTGAGGGAGCACTTGGGATAAGTGAGAAAATAATTTTTTGCATTTAATTTAAACCGATTTGGGGCTGCCATGTTGACTTAGTCAATCGGTGTCTCTCAATTTGTTCTATGTATCGGTGTACTGGAGTCCTATATATATGGAGACTCTAATGGCATAATTGTAATAATAGAACTTTAATTTGAAATTCAAAATAAAAGGCTAAACGGCCATCCGTATAATATT

Gene Information

NCBI Accession	NP_632008.1
Location	144-500
Gene Name	V2
Protein Name	precoat protein
Coding Region	ATGTGGGATCCATTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAATTAGTAGAAAAGACCTATTCTCCCGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence	MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP

NCBI Accession	NP_632009.1
Location	304-1074
Gene Name	V1
Protein Name	coat protein
Coding Region	ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGTTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGTCCAGACACGATGTAGTCCATATAGGCAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACCGGGCTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCTGTTTACGTTTTGGGGAAGATATGGATGGATGAGAACATCAAGACCAAGAATCATACGAACAGTGTCATGTTTTTTCTTGTTCGTGACCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACCGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATACTGAAAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA
Protein Sequence	MSKRPADIIISTPASKVRRRLNFDSPYVSRAVAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession	NP_632010.1
Location	1071-1475
Gene Name	C3
Protein Name	C3 protein
Coding Region	ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAGACCCAAGTGCTTAAGTACTTAAATAATTTAGGAGTTATCAGTATTAACAATGTAATTAGAGCCGTTGATCATGTATTATGGAATGTATTACACCACGTTGTATATGTAGACCAAACATGTTCAATAAAATTCAATATTTATTAA
Protein Sequence	MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDIITVQVQFNHNLRKVLGIHKCFLVYRIWMTLQPPTGRFLRVFKTQVLKYLNNLGVISINNVIRAVDHVLWNVLHHVVYVDQTCSIKFNIY

NCBI Accession	NP_632011.1
Location	1216-1620
Gene Name	C2
Protein Name	C2 protein
Coding Region	ATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGCGGCTGTTCTTACTTCATAGCATTAGCCTGTCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCATCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACCTTACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA
Protein Sequence	MRPSSPPRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGI

NCBI Accession	NP_632012.1
Location	1523-2608
Gene Name	rep
Protein Name	replication-associated protein
Coding Region	ATGGCAGCCCCAAATCGGTTTAAATTAAATGCAAAAAATTATTTTCTCACTTATCCCAAGTGCTCCCTCACTAAAGAAGAAGCACTTTCCCAATTCTTAAATCTCCAAACACCAACTTCTAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAAGGGAGAAGGCTCCCAAAGATTATGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCCTTTGATCAGGTTCCAGAAGAACTTGAGGAATGGGCTGCCGAGAACGTCGTCAATGCCGCTGCGCGGCCTTTGAGGCCCGTAAGTATAGTGATTGAGGGTGACAGTAGGACGGGGAAAACAATGTGGGCCAGATCACTGGGACCACATAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTCTACAGTAATGATGCGTGGTATAACGTAATTGATGACGTAGACCCCAACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATAGAAAGTACAATAAGCCAGTTCAAATTAAAGGCGGAATTCCCACAATCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATTCTTGGATGAAGAAAAGAATTCTAAACTAAAAAACTGGGCTATAAAGAATGCGACCTTCGTCACCCCCGAGGGCCCACTCTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA
Protein Sequence	MAAPNRFKLNAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVNAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPNYLKHFKEFMGAQRDWQSNRKYNKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSKLKNWAIKNATFVTPEGPLYSGTNQSAAQASQEGDQTSTS

NCBI Accession	NP_632013.1
Location	2158-2451
Gene Name	C4
Protein Name	C4 protein
Coding Region	ATGGGACTCCTCACTTACATGTTCTCATCCAGTTCGAAGGAAAATTCCAGTGCAAGAACAATAGATTCTTCGACCTTACCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAACGCAGGGTCAAAAATTGAGGCCCTCAATATATTAA
Protein Sequence	MGLLTYMFSSSSKENSSARTIDSSTLPPQPGQHISIRTFRELKAQAMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGQKLRPSIY

References More References in PubMed

1	Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods. Naganur P, et al. Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490. PMID: 36771575
2	Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus. Chatchawankanphanich O, et al. Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637. PMID: 18944261
3	Molecular analysis, infectivity and host range of Tomato leaf curl Karnataka virus associated with Corchorus yellow vein mosaic betasatellite. Dokka N, et al. Virus Res. 2021 Oct 2;303:198521. doi: 10.1016/j.virusres.2021.198521. Epub 2021 Jul 24. PMID: 34314770
4	Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana. Vo TTB, et al. Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907. PMID: 38138051
5	Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection. Venkataravanappa V, et al. 3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2. PMID: 32550101
6	A New Begomovirus Species Causing Tomato Leaf Curl Disease in Varanasi, India. Chakraborty S, et al. Plant Dis. 2003 Mar;87(3):313. doi: 10.1094/PDIS.2003.87.3.313A. PMID: 30812767
7	Molecular investigations reveal bitter gourd crop is more susceptible to tomato leaf curl New Delhi virus infection in diverse crop cultivation practices. Kiran GVNSM, et al. 3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17. PMID: 34881163
8	Tomato leaf curl Gujarat virus, a New Begomovirus Species Causing a Severe Leaf Curl Disease of Tomato in Varanasi, India. Chakraborty S, et al. Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485. PMID: 18943612
9	Molecular characterization of begomovirus and DNA satellites associated with mosaic and leaf curl disease of Jamaica cherry (Muntingia calabura) in India: Uncovering a new host for chilli leaf curl India virus. Prasad KSUD, et al. Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16. PMID: 39464737
10	Molecular evidence for the occurrence of tomato leaf curl New Delhi virus on chayote (Sechium edule) in southern India. Nagendran K, et al. Virusdisease. 2017 Dec;28(4):425-429. doi: 10.1007/s13337-017-0403-7. Epub 2017 Oct 9. PMID: 29291235