Genus | Begomovirus |
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NCBI Assembly | GCF_000864425.1 |
Isolate | Bangladesh:Gazipur, Joydebpur |
Release date | 2015/2/13 |
Submitter | Maruthi,M.N., Rekha,A.R., Alam,S.N., Kader,K.A., Cork,A., Colvin,J. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_459901.1 |
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Location | 146-502 |
Gene Name | AV2 |
Protein Name | AV2 protein |
Coding Region | ATGTGGGATCCGTTAGTAAACGACTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTCTCGGGTACGATTTAATCCGGGATTTAATTTCAGTTATCAGGGCCAGAAATTATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAG |
Protein Sequence | MWDPLVNDFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYGEATGRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS |
NCBI Accession | YP_459902.1 |
---|---|
Location | 306-1076 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTTGAGTCTAGACATGATGTCCAACACATAGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTACTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACCGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCAACTGTGACTGGTGGTCAATATGCATCGAAGGAGCAAGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAAAACCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA |
Protein Sequence | MAKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWANRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession | YP_459903.1 |
---|---|
Location | 1073-1477 |
Gene Name | AC3 |
Protein Name | replication enhancer |
Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCCGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAACCGAGCACCACCACCGGCCATTCCTAATGAACCACGACATCATCACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAGGACCCAAGTTTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCAGTCGATCATGTATTATGGAATGTATTAGCGCAAACAATTTATGTACAAAGTTCAAGCATAATAAAATTCAATATTTATTAA |
Protein Sequence | MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDIITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINNVIRAVDHVLWNVLAQTIYVQSSSIIKFNIY |
NCBI Accession | YP_459904.1 |
---|---|
Location | 1218-1622 |
Gene Name | AC2 |
Protein Name | transcriptional activator protein (TrAP) |
Coding Region | ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTCCAGCACAGGCTAGCCAAGAGGGGGACCAGGCGTCGTCGCGTTGACCTGGACTGCGGCTGTTCATACTTCATCGCATTACGCTGCCACGACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCCGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAACCGAGCACCACCACCGGCCATTCCTAATGAACCACGACATCATCACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAG |
Protein Sequence | MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALRCHDYGFTHRGTHHCSSGREWRVYLGDNKSPLFQDNRAPPPAIPNEPRHHHSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGL |
NCBI Accession | YP_459905.1 |
---|---|
Location | 1525-2610 |
Gene Name | AC1 |
Protein Name | replication protein |
Coding Region | ATGGCTCCTCCAAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCCAAGTGCTCTCTTACTAAAGAAGAGGCACTTTCCCAATTACAACATTTAGAAACTCCAGTAAATAAATTATTTATTAGGGTTTGCAGAGAACTACACGAAAATGGGGAACCTCATCTACACGTGCTCCTCCAATTTGAGGGAAAATTCCAATGCAAAAATCACCGATTCTTCGACCTCGTTTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCTACAGATGTCAAAGCCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCATGGTCCAAAGCTGCGGCCCTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTTTCTCCTTTTTCTTCCTCTTCTTTTGATCAAGTTCCCGAGGAACTTGAAGAATGGGCTACCGAGAATGTGGTGTCTGCCGCTGCGCGGCCATTACGACCCGTAAGTGTAGTCATACAGGGTGATAGTCGAACGGGCAAGACGGTGTGGGCGAGGTCACTAGGTCCACACAATTATTTGTGTGGTCATCTCGACCTTAGCCCAAAGGTGTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTTGATCCTCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAAAATAGCGCACTCAAAAATTGGGCTTTGAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTCCAGCACAGGCTAGCCAAGAGGGGGACCAGGCGTCGTCGCGTTGA |
Protein Sequence | MAPPNKFRINAKNYFLTYPKCSLTKEEALSQLQHLETPVNKLFIRVCRELHENGEPHLHVLLQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSWSKAAALNILREKAPKDYVLQFHNLNANLDRIFTPPPEVYVSPFSSSSFDQVPEELEEWATENVVSAAARPLRPVSVVIQGDSRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSPAQASQEGDQASSR |
NCBI Accession | YP_459906.1 |
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Location | 2160-2453 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGGAACCTCATCTACACGTGCTCCTCCAATTTGAGGGAAAATTCCAATGCAAAAATCACCGATTCTTCGACCTCGTTTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCTACAGATGTCAAAGCCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCATGGTCCAAAGCTGCGGCCCTCAATATTTTAA |
Protein Sequence | MGNLIYTCSSNLRENSNAKITDSSTSFPHPGQHISIRTFRELRALQMSKPTWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIHGPKLRPSIF |
1 |
Krishnan N, et al. J Virol Methods. 2022 Apr;302:114474. doi: 10.1016/j.jviromet.2022.114474. Epub 2022 Jan 22. PMID: 35077721 |
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2 |
Silencing of tomato CTR1 provides enhanced tolerance against Tomato leaf curl virus infection. Chandan RK, et al. Plant Signal Behav. 2019;14(3):e1565595. doi: 10.1080/15592324.2019.1565595. Epub 2019 Jan 19. PMID: 30661468 |
3 |
Tiwari N, et al. Arch Virol. 2013 Jan;158(1):1-10. doi: 10.1007/s00705-012-1440-6. Epub 2012 Aug 24. PMID: 22918555 |
4 |
First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh. Maruthi MN, et al. Plant Dis. 2005 Sep;89(9):1011. doi: 10.1094/PD-89-1011C. PMID: 30786642 |
5 |
A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, India. Kumari P, et al. Plant Dis. 2009 May;93(5):545. doi: 10.1094/PDIS-93-5-0545B. PMID: 30764166 |
6 |
Kumari P, et al. Virus Res. 2010 Sep;152(1-2):19-29. doi: 10.1016/j.virusres.2010.05.015. Epub 2010 Jun 9. PMID: 20540978 |
7 |
Nayaka SN, et al. Virusdisease. 2023 Sep;34(3):421-430. doi: 10.1007/s13337-023-00837-8. Epub 2023 Sep 8. PMID: 37780909 |
8 |
Kumar P, et al. Virusdisease. 2022 Sep;33(3):270-283. doi: 10.1007/s13337-022-00785-9. Epub 2022 Sep 10. PMID: 36277410 |
9 |
Ranjan P, et al. Virus Genes. 2014 Apr;48(2):334-42. doi: 10.1007/s11262-013-1031-y. Epub 2014 Jan 3. PMID: 24384936 |
10 |
Maruthi MN, et al. Phytopathology. 2005 Dec;95(12):1472-81. doi: 10.1094/PHYTO-95-1472. PMID: 18943559 |