Tomato leaf curl Joydebpur virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000864425.1
Isolate Bangladesh:Gazipur, Joydebpur
Release date 2015/2/13
Submitter Maruthi,M.N., Rekha,A.R., Alam,S.N., Kader,K.A., Cork,A., Colvin,J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_007723
ACCGGATGGCCGCGATTTTTTTCAAGTGGGCCCCACCACGCACGTGCTGACAAGGACAATTGGACCAATCAGAAATGCCGCTCAAAGCTTAATTGTTTCGTGGTCCCCTATATAAACTTGGGCTCCAAGTAGTGCACTCATACCAATGTGGGATCCGTTAGTAAACGACTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTCTCGGGTACGATTTAATCCGGGATTTAATTTCAGTTATCAGGGCCAGAAATTATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTTGAGTCTAGACATGATGTCCAACACATAGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTACTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACCGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCAACTGTGACTGGTGGTCAATATGCATCGAAGGAGCAAGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAAAACCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTATGCTTGAACTTTGTACATAAATTGTTTGCGCTAATACATTCCATAATACATGATCGACTGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAAAACTTGGGTCCTAAAGACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGTGATGATGTCGTGGTTCATTAGGAATGGCCGGTGGTGGTGCTCGGTTATCTTGAAATAGAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCGGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTCGTGGCAGCGTAATGCGATGAAGTATGAACAGCCGCAGTCCAGGTCAACGCGACGACGCCTGGTCCCCCTCTTGGCTAGCCTGTGCTGGACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTCAAAGCCCAATTTTTGAGTGCGCTATTTTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGAGGATCAACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTACACCTTTGGGCTAAGGTCGAGATGACCACACAAATAATTGTGTGGACCTAGTGACCTCGCCCACACCGTCTTGCCCGTTCGACTATCACCCTGTATGACTACACTTACGGGTCGTAATGGCCGCGCAGCGGCAGACACCACATTCTCGGTAGCCCATTCTTCAAGTTCCTCGGGAACTTGATCAAAAGAAGAGGAAGAAAAAGGAGAAACATAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAAAACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGCAGCTTTGGACCATGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGCTTTGACATCTGTAGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGGGATGGGGAAACGAGGTCGAAGAATCGGTGATTTTTGCATTGGAATTTTCCCTCAAATTGGAGGAGCACGTGTAGATGAGGTTCCCCATTTTCGTGTAGTTCTCTGCAAACCCTAATAAATAATTTATTTACTGGAGTTTCTAAATGTTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGAGAGCACTTGGGATATGTGAGGAAATAATTTTTGGCATTTATTCTGAATTTATTTGGAGGAGCCATTGACTTGGTCAATCGGTGTCCAGCAAACTTGGCTATGCAATTGGTGTCTGGTGTCTTATTTATATGTAGACACCGAATGGCATATGTGTAATTTTTGAAATAACTTTAATTCAAATTTCAAAATGCCCAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_459901.1
Location 146-502
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCGTTAGTAAACGACTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTCTCGGGTACGATTTAATCCGGGATTTAATTTCAGTTATCAGGGCCAGAAATTATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNDFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYGEATGRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS

NCBI Accession YP_459902.1
Location 306-1076
Gene Name AV1
Protein Name coat protein
Coding Region ATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTTGAGTCTAGACATGATGTCCAACACATAGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTACTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACCGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCAACTGTGACTGGTGGTCAATATGCATCGAAGGAGCAAGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAAAACCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MAKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWANRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_459903.1
Location 1073-1477
Gene Name AC3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCCGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAACCGAGCACCACCACCGGCCATTCCTAATGAACCACGACATCATCACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAGGACCCAAGTTTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCAGTCGATCATGTATTATGGAATGTATTAGCGCAAACAATTTATGTACAAAGTTCAAGCATAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDIITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINNVIRAVDHVLWNVLAQTIYVQSSSIIKFNIY

NCBI Accession YP_459904.1
Location 1218-1622
Gene Name AC2
Protein Name transcriptional activator protein (TrAP)
Coding Region ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTCCAGCACAGGCTAGCCAAGAGGGGGACCAGGCGTCGTCGCGTTGACCTGGACTGCGGCTGTTCATACTTCATCGCATTACGCTGCCACGACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCCGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAACCGAGCACCACCACCGGCCATTCCTAATGAACCACGACATCATCACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAG
Protein Sequence MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALRCHDYGFTHRGTHHCSSGREWRVYLGDNKSPLFQDNRAPPPAIPNEPRHHHSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGL

NCBI Accession YP_459905.1
Location 1525-2610
Gene Name AC1
Protein Name replication protein
Coding Region ATGGCTCCTCCAAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCCAAGTGCTCTCTTACTAAAGAAGAGGCACTTTCCCAATTACAACATTTAGAAACTCCAGTAAATAAATTATTTATTAGGGTTTGCAGAGAACTACACGAAAATGGGGAACCTCATCTACACGTGCTCCTCCAATTTGAGGGAAAATTCCAATGCAAAAATCACCGATTCTTCGACCTCGTTTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCTACAGATGTCAAAGCCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCATGGTCCAAAGCTGCGGCCCTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTTTCTCCTTTTTCTTCCTCTTCTTTTGATCAAGTTCCCGAGGAACTTGAAGAATGGGCTACCGAGAATGTGGTGTCTGCCGCTGCGCGGCCATTACGACCCGTAAGTGTAGTCATACAGGGTGATAGTCGAACGGGCAAGACGGTGTGGGCGAGGTCACTAGGTCCACACAATTATTTGTGTGGTCATCTCGACCTTAGCCCAAAGGTGTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTTGATCCTCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAAAATAGCGCACTCAAAAATTGGGCTTTGAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTCCAGCACAGGCTAGCCAAGAGGGGGACCAGGCGTCGTCGCGTTGA
Protein Sequence MAPPNKFRINAKNYFLTYPKCSLTKEEALSQLQHLETPVNKLFIRVCRELHENGEPHLHVLLQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSWSKAAALNILREKAPKDYVLQFHNLNANLDRIFTPPPEVYVSPFSSSSFDQVPEELEEWATENVVSAAARPLRPVSVVIQGDSRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSPAQASQEGDQASSR

NCBI Accession YP_459906.1
Location 2160-2453
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATCTACACGTGCTCCTCCAATTTGAGGGAAAATTCCAATGCAAAAATCACCGATTCTTCGACCTCGTTTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCTACAGATGTCAAAGCCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCATGGTCCAAAGCTGCGGCCCTCAATATTTTAA
Protein Sequence MGNLIYTCSSNLRENSNAKITDSSTSFPHPGQHISIRTFRELRALQMSKPTWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIHGPKLRPSIF

References More References in PubMed

1

Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana.

Vo TTB, et al.  Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907.

PMID: 38138051
2

Loop-mediated isothermal amplification assay for quicker detection of tomato leaf curl Joydebpur virus infection in chilli.

Krishnan N, et al.  J Virol Methods. 2022 Apr;302:114474. doi: 10.1016/j.jviromet.2022.114474. Epub 2022 Jan 22.

PMID: 35077721
3

Bottle gourd IC-0262269, a super-susceptible genotype to tomato leaf curl Palampur virus.

Nayaka SN, et al.  3 Biotech. 2024 Jan;14(1):8. doi: 10.1007/s13205-023-03838-y. Epub 2023 Dec 8.

PMID: 38074288
4

Tomato leaf curl Joydebpur virus: a monopartite begomovirus causing severe leaf curl in tomato in West Bengal.

Tiwari N, et al.  Arch Virol. 2013 Jan;158(1):1-10. doi: 10.1007/s00705-012-1440-6. Epub 2012 Aug 24.

PMID: 22918555
5

Silencing of tomato CTR1 provides enhanced tolerance against Tomato leaf curl virus infection.

Chandan RK, et al.  Plant Signal Behav. 2019;14(3):e1565595. doi: 10.1080/15592324.2019.1565595. Epub 2019 Jan 19.

PMID: 30661468
6

A New Begomovirus Species Causing Tomato Leaf Curl Disease in Patna, India.

Kumari P, et al.  Plant Dis. 2009 May;93(5):545. doi: 10.1094/PDIS-93-5-0545B.

PMID: 30764166
7

First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh.

Maruthi MN, et al.  Plant Dis. 2005 Sep;89(9):1011. doi: 10.1094/PD-89-1011C.

PMID: 30786642
8

Molecular characterization of a new species of Begomovirus and betasatellite causing leaf curl disease of tomato in India.

Kumari P, et al.  Virus Res. 2010 Sep;152(1-2):19-29. doi: 10.1016/j.virusres.2010.05.015. Epub 2010 Jun 9.

PMID: 20540978
9

Geographical distribution of tomato-infecting begomoviruses in major cucurbits in India: a diagnostic analysis using begomovirus species specific PCR.

Nayaka SN, et al.  Virusdisease. 2023 Sep;34(3):421-430. doi: 10.1007/s13337-023-00837-8. Epub 2023 Sep 8.

PMID: 37780909
10

Random distribution of nucleotide polymorphism throughout the genome of tomato-infecting begomovirus species occurring in India: implication in PCR based diagnosis.

Kumar P, et al.  Virusdisease. 2022 Sep;33(3):270-283. doi: 10.1007/s13337-022-00785-9. Epub 2022 Sep 10.

PMID: 36277410