Tomato leaf curl Java virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842305.1
Isolate Indonesia
Release date 2015/2/12
Submitter Kon,T., Hidayat,S.H., Hase,S., Takahashi,H., Ikegami,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_005031
TAATATTACCGGATGGCCGCGATTTTTTTAAAGTGTCCCCCCCACTAACAAATGTCCCCCAATCAGAACGCGCCCTCAAAGCTAAATTATTAACTGGTCCCCTATTTATACTTAGTCTCCAAGTATTATGTTAAACATGTGGGATCCCCTCGTAAACGAATTCCCAGAGACTGTTCACGGTCTACGGTGTATGCTAGCCGTAAAATATCTTCAATTAGTTGAAGCTACGTATTCTCCTGATACGATTGGGTACGATCTTGTACGCGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTTAGTCACGTGGGTAAGGTCTGTTGTATAACTGACGTCACTAGGGGTTTAGGTTTGACACATAGGACGGGTAAGAGGTTTTGCGTTAAGTCCGTCTACATAATGGGCAAGGTCTGGATGGATGAGAATATCAAGACCAAGAATCACACTAACACAGTTATGTTTTTTCTAGTCCGTGATCGAAGACCTTATTCAAGTCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGACAATGAGCCAAGTACAGCTACTGTCAAGAACGATATGCGAGATCGTTTTCAGGTCTTACGGAAATTCACATCAACTGTTACTGGTGGTCAGTATGCATGCAAGGAGCAGTCTCTCGTCAAACGTTTTTTTAGAGTTAATAATCATGTAGTTTATAATCATCAAGAGGCGGGAAAGTATGAGAACCATACTGAGAACGCTCTTTTATTATATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAATAAAGATTAAATTTTATTATATGAGATTGTGTTACATATTCTGTGTTTTCCAATACATCCCATAAAACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATTCGGATCGTTATGACGTCGTGGTTGGTGTTGAATATTCTCTCGTGGTGCTTGATTATCTTGAAATAGAGGGGATTTTTGATCGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTAAATCCATGATTTGCACAGTCTATTCCGAAGTAGTAAGAACACCCGCACGTTAGATCAATTCTACGCCTGCGAACTGGCCTCCTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGACGAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTATGTGGGCCTAAAGAACGAGCCCACATCGTCTTCCCTGTACGGCTCTCACCCTCTATGACAATACTAACAGGTCTCCATGGCCGCGCAGCGGCATCCCTTACGTTTTCGGAAACCCAGCACTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAAGAAATGGACAAACAAAAACCTCTGCACGAGGTGTAAAAATCCTATCTAAATTAGCTTTAATATTATGATATTGAAAAATAAAATCTTTAGGGAGCTCCTCTCTAATAATAGCTAAAGCTGCTTCGGCTGAACCTGAATTTAGGGCCTTTGCAGCTGTGTCGTTAGCCGTCTGTTGACCTCCTCGAGCACTTCTTCCGTCGACCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATATAAGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTAGGGGATGTAAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTCCCTTCGAACTGGATAAGCACGTGCAGATGAGGGCTCCCATCTTCATGGAGTTCTCTGCAGATTTTGATGAATTTTTTATTTGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAATAATTTTTGGCATTTATTAAAAAACGTTTGGGAGGTGCCATTTGACTTGGTCAATCGGGTCTCAACAAACTTGCGTTAGCAATCGGGGAATGGGTCTCAATATATAGTGAGGACCTAAATGGCATTATTGTAATTCTCGAAAGTAATTCAAATTTCAAATTTTGAATCCAATAGCGGCCATCCGTA

Gene Information

NCBI Accession NP_871716.1
Location 137-487
Gene Name V2
Protein Name V2 protein
Coding Region ATGTGGGATCCCCTCGTAAACGAATTCCCAGAGACTGTTCACGGTCTACGGTGTATGCTAGCCGTAAAATATCTTCAATTAGTTGAAGCTACGTATTCTCCTGATACGATTGGGTACGATCTTGTACGCGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPETVHGLRCMLAVKYLQLVEATYSPDTIGYDLVRDLISVIRARNYVEASRRYSHFHSRLEGTSSSELRHTRDEPCCCPHCPRHQQKKDMDQQAHVSQAQNVQNVQKP

NCBI Accession NP_871717.1
Location 297-1070
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTTAGTCACGTGGGTAAGGTCTGTTGTATAACTGACGTCACTAGGGGTTTAGGTTTGACACATAGGACGGGTAAGAGGTTTTGCGTTAAGTCCGTCTACATAATGGGCAAGGTCTGGATGGATGAGAATATCAAGACCAAGAATCACACTAACACAGTTATGTTTTTTCTAGTCCGTGATCGAAGACCTTATTCAAGTCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGACAATGAGCCAAGTACAGCTACTGTCAAGAACGATATGCGAGATCGTTTTCAGGTCTTACGGAAATTCACATCAACTGTTACTGGTGGTCAGTATGCATGCAAGGAGCAGTCTCTCGTCAAACGTTTTTTTAGAGTTAATAATCATGTAGTTTATAATCATCAAGAGGCGGGAAAGTATGAGAACCATACTGAGAACGCTCTTTTATTATATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDTPAMSRAAAPTVLVTNKRRTWTNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVSHVGKVCCITDVTRGLGLTHRTGKRFCVKSVYIMGKVWMDENIKTKNHTNTVMFFLVRDRRPYSSPQDFGQVFNMYDNEPSTATVKNDMRDRFQVLRKFTSTVTGGQYACKEQSLVKRFFRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession NP_871718.1
Location 1067-1471
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTCTATTTCAAGATAATCAAGCACCACGAGAGAATATTCAACACCAACCACGACGTCATAACGATCCGAATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTTTTATGGGATGTATTGGAAAACACAGAATATGTAACACAATCTCATATAATAAAATTTAATCTTTATTAA
Protein Sequence MDLRTGELLTATQCESGVYTWTIKNPLYFKIIKHHERIFNTNHDVITIRIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLENTEYVTQSHIIKFNLY

NCBI Accession NP_871719.1
Location 1212-1619
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGTAGAATTGATCTAACGTGCGGGTGTTCTTACTACTTCGGAATAGACTGTGCAAATCATGGATTTACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTCTATTTCAAGATAATCAAGCACCACGAGAGAATATTCAACACCAACCACGACGTCATAACGATCCGAATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG
Protein Sequence MQNSSPSTAHCTQVPIKVQHRIAKRRPVRRRRIDLTCGCSYYFGIDCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRENIQHQPRRHNDPNTVQSQPEESVGNTPVFSDLPDLDSLTTSDLAFLKSI

NCBI Accession NP_871720.1
Location 1525-2607
Gene Name C1
Protein Name replication initiation protein
Coding Region ATGGCACCTCCCAAACGTTTTTTAATAAATGCCAAAAATTATTTCCTCACATACCCACAGTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAACACCCCAACAAATAAAAAATTCATCAAAATCTGCAGAGAACTCCATGAAGATGGGAGCCCTCATCTGCACGTGCTTATCCAGTTCGAAGGGAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTTACATCCCCTACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCTTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGAAGAAGTGCTCGAGGAGGTCAACAGACGGCTAACGACACAGCTGCAAAGGCCCTAAATTCAGGTTCAGCCGAAGCAGCTTTAGCTATTATTAGAGAGGAGCTCCCTAAAGATTTTATTTTTCAATATCATAATATTAAAGCTAATTTAGATAGGATTTTTACACCTCGTGCAGAGGTTTTTGTTTGTCCATTTCTTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAGTGCTGGGTTTCCGAAAACGTAAGGGATGCCGCTGCGCGGCCATGGAGACCTGTTAGTATTGTCATAGAGGGTGAGAGCCGTACAGGGAAGACGATGTGGGCTCGTTCTTTAGGCCCACATAATTATTTGTGCGGTCATTTAGATCTGAGCCCAAAGGTATACAGCAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTACTTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTTTGCAATCCAGGCCCAACATCATCATATAAAGAGTACTTGGACGAAGAGAAGAATTCGGCATTAAAAGAGTGGGCTATAAAGAATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGTAG
Protein Sequence MAPPKRFLINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKFIKICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGQQTANDTAAKALNSGSAEAALAIIREELPKDFIFQYHNIKANLDRIFTPRAEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWAIKNAEFVTLNSPLYSGTNQSATQNSQEEASSQA

NCBI Accession NP_871721.1
Location 2193-2456
Gene Name C4
Protein Name C4 protein
Coding Region ATGAAGATGGGAGCCCTCATCTGCACGTGCTTATCCAGTTCGAAGGGAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTTACATCCCCTACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCTTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGAAGAAGTGCTCGAGGAGGTCAACAGACGGCTAACGACACAGCTGCAAAGGCCCTAA
Protein Sequence MKMGALICTCLSSSKGNSSAKITDSSTLHPLPGQHISIRTFRELNQAPTSSLISTRTETHWNGENSRSTEEVLEEVNRRLTTQLQRP

References More References in PubMed

1

Tomato yellow leaf curl viruses: menage a trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
2

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
3

Ty-2 and Ty-3a Conferred Resistance are Insufficient Against Tomato Yellow Leaf Curl Kanchanaburi Virus from Southeast Asia in Single or Mixed Infections of Tomato.

Koeda S, et al.  Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12.

PMID: 33044916
4

Association of an alphasatellite with tomato yellow leaf curl virus and ageratum yellow vein virus in Japan is suggestive of a recent introduction.

Shahid MS, et al.  Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189.

PMID: 24424499
5

Suppressor of RNA silencing encoded by the monopartite tomato leaf curl Java begomovirus.

Kon T, et al.  Arch Virol. 2007;152(7):1273-82. doi: 10.1007/s00705-007-0957-6. Epub 2007 Mar 26.

PMID: 17385070
6

First Report of Tomato leaf curl New Delhi virus Infecting Cucumber in Central Java, Indonesia.

Mizutani T, et al.  Plant Dis. 2011 Nov;95(11):1485. doi: 10.1094/PDIS-03-11-0196.

PMID: 30731770
7

Tomato leaf curl Java virus V2 protein is a determinant of virulence, hypersensitive response and suppression of posttranscriptional gene silencing.

Sharma P, et al.  Virology. 2010 Jan 5;396(1):85-93. doi: 10.1016/j.virol.2009.10.012. Epub 2009 Nov 6.

PMID: 19896687
8

A begomovirus associated with Ageratum yellow vein disease in Indonesia: evidence for natural recombination between tomato leaf curl Java virus and Ageratum yellow vein virus-[Java].

Kon T, et al.  Arch Virol. 2007;152(6):1147-57. doi: 10.1007/s00705-006-0928-3. Epub 2007 Feb 12.

PMID: 17294343
9

Strains of a new bipartite begomovirus, pepper yellow leaf curl Indonesia virus, in leaf-curl-diseased tomato and yellow-vein-diseased ageratum in Indonesia.

Sakata JJ, et al.  Arch Virol. 2008;153(12):2307-13. doi: 10.1007/s00705-008-0254-z. Epub 2008 Nov 18.

PMID: 19015934
10

Complete Genome Sequence of Tomato Leaf Curl New Delhi Virus from Luffa in Indonesia.

Wilisiani F, et al.  Microbiol Resour Announc. 2019 Apr 11;8(15):e01605-18. doi: 10.1128/MRA.01605-18.

PMID: 30975814