Genus | Begomovirus |
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NCBI Assembly | GCF_000842305.1 |
Isolate | Indonesia |
Release date | 2015/2/12 |
Submitter | Kon,T., Hidayat,S.H., Hase,S., Takahashi,H., Ikegami,M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_871716.1 |
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Location | 137-487 |
Gene Name | V2 |
Protein Name | V2 protein |
Coding Region | ATGTGGGATCCCCTCGTAAACGAATTCCCAGAGACTGTTCACGGTCTACGGTGTATGCTAGCCGTAAAATATCTTCAATTAGTTGAAGCTACGTATTCTCCTGATACGATTGGGTACGATCTTGTACGCGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA |
Protein Sequence | MWDPLVNEFPETVHGLRCMLAVKYLQLVEATYSPDTIGYDLVRDLISVIRARNYVEASRRYSHFHSRLEGTSSSELRHTRDEPCCCPHCPRHQQKKDMDQQAHVSQAQNVQNVQKP |
NCBI Accession | NP_871717.1 |
---|---|
Location | 297-1070 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTTAGTCACGTGGGTAAGGTCTGTTGTATAACTGACGTCACTAGGGGTTTAGGTTTGACACATAGGACGGGTAAGAGGTTTTGCGTTAAGTCCGTCTACATAATGGGCAAGGTCTGGATGGATGAGAATATCAAGACCAAGAATCACACTAACACAGTTATGTTTTTTCTAGTCCGTGATCGAAGACCTTATTCAAGTCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGACAATGAGCCAAGTACAGCTACTGTCAAGAACGATATGCGAGATCGTTTTCAGGTCTTACGGAAATTCACATCAACTGTTACTGGTGGTCAGTATGCATGCAAGGAGCAGTCTCTCGTCAAACGTTTTTTTAGAGTTAATAATCATGTAGTTTATAATCATCAAGAGGCGGGAAAGTATGAGAACCATACTGAGAACGCTCTTTTATTATATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAA |
Protein Sequence | MSKRPADIVISTPASKVRRRLNFDTPAMSRAAAPTVLVTNKRRTWTNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVSHVGKVCCITDVTRGLGLTHRTGKRFCVKSVYIMGKVWMDENIKTKNHTNTVMFFLVRDRRPYSSPQDFGQVFNMYDNEPSTATVKNDMRDRFQVLRKFTSTVTGGQYACKEQSLVKRFFRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession | NP_871718.1 |
---|---|
Location | 1067-1471 |
Gene Name | C3 |
Protein Name | C3 protein |
Coding Region | ATGGATTTACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTCTATTTCAAGATAATCAAGCACCACGAGAGAATATTCAACACCAACCACGACGTCATAACGATCCGAATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTTTTATGGGATGTATTGGAAAACACAGAATATGTAACACAATCTCATATAATAAAATTTAATCTTTATTAA |
Protein Sequence | MDLRTGELLTATQCESGVYTWTIKNPLYFKIIKHHERIFNTNHDVITIRIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLENTEYVTQSHIIKFNLY |
NCBI Accession | NP_871719.1 |
---|---|
Location | 1212-1619 |
Gene Name | C2 |
Protein Name | C2 protein |
Coding Region | ATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGTAGAATTGATCTAACGTGCGGGTGTTCTTACTACTTCGGAATAGACTGTGCAAATCATGGATTTACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTCTATTTCAAGATAATCAAGCACCACGAGAGAATATTCAACACCAACCACGACGTCATAACGATCCGAATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
Protein Sequence | MQNSSPSTAHCTQVPIKVQHRIAKRRPVRRRRIDLTCGCSYYFGIDCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRENIQHQPRRHNDPNTVQSQPEESVGNTPVFSDLPDLDSLTTSDLAFLKSI |
NCBI Accession | NP_871720.1 |
---|---|
Location | 1525-2607 |
Gene Name | C1 |
Protein Name | replication initiation protein |
Coding Region | ATGGCACCTCCCAAACGTTTTTTAATAAATGCCAAAAATTATTTCCTCACATACCCACAGTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAACACCCCAACAAATAAAAAATTCATCAAAATCTGCAGAGAACTCCATGAAGATGGGAGCCCTCATCTGCACGTGCTTATCCAGTTCGAAGGGAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTTACATCCCCTACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCTTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGAAGAAGTGCTCGAGGAGGTCAACAGACGGCTAACGACACAGCTGCAAAGGCCCTAAATTCAGGTTCAGCCGAAGCAGCTTTAGCTATTATTAGAGAGGAGCTCCCTAAAGATTTTATTTTTCAATATCATAATATTAAAGCTAATTTAGATAGGATTTTTACACCTCGTGCAGAGGTTTTTGTTTGTCCATTTCTTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAGTGCTGGGTTTCCGAAAACGTAAGGGATGCCGCTGCGCGGCCATGGAGACCTGTTAGTATTGTCATAGAGGGTGAGAGCCGTACAGGGAAGACGATGTGGGCTCGTTCTTTAGGCCCACATAATTATTTGTGCGGTCATTTAGATCTGAGCCCAAAGGTATACAGCAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTACTTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTTTGCAATCCAGGCCCAACATCATCATATAAAGAGTACTTGGACGAAGAGAAGAATTCGGCATTAAAAGAGTGGGCTATAAAGAATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGTAG |
Protein Sequence | MAPPKRFLINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKFIKICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGQQTANDTAAKALNSGSAEAALAIIREELPKDFIFQYHNIKANLDRIFTPRAEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWAIKNAEFVTLNSPLYSGTNQSATQNSQEEASSQA |
NCBI Accession | NP_871721.1 |
---|---|
Location | 2193-2456 |
Gene Name | C4 |
Protein Name | C4 protein |
Coding Region | ATGAAGATGGGAGCCCTCATCTGCACGTGCTTATCCAGTTCGAAGGGAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTTACATCCCCTACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCTTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGAAGAAGTGCTCGAGGAGGTCAACAGACGGCTAACGACACAGCTGCAAAGGCCCTAA |
Protein Sequence | MKMGALICTCLSSSKGNSSAKITDSSTLHPLPGQHISIRTFRELNQAPTSSLISTRTETHWNGENSRSTEEVLEEVNRRLTTQLQRP |
1 |
Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China. Li R, et al. Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print. PMID: 36281022 |
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2 |
Koeda S, et al. Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12. PMID: 33044916 |
3 |
Kesumawati E, et al. Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15. PMID: 31203434 |
4 |
Complete Genome Sequence of Tomato Leaf Curl New Delhi Virus from Luffa in Indonesia. Wilisiani F, et al. Microbiol Resour Announc. 2019 Apr 11;8(15):e01605-18. doi: 10.1128/MRA.01605-18. PMID: 30975814 |
5 |
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6 |
Sharma P, et al. Virology. 2010 Jan 5;396(1):85-93. doi: 10.1016/j.virol.2009.10.012. Epub 2009 Nov 6. PMID: 19896687 |
7 |
First Report of Tomato leaf curl New Delhi virus Infecting Cucumber in Central Java, Indonesia. Mizutani T, et al. Plant Dis. 2011 Nov;95(11):1485. doi: 10.1094/PDIS-03-11-0196. PMID: 30731770 |
8 |
Neriya Y, et al. Microbiol Resour Announc. 2020 Jun 18;9(25):e00486-20. doi: 10.1128/MRA.00486-20. PMID: 32554790 |
9 |
Kon T, et al. Arch Virol. 2007;152(6):1147-57. doi: 10.1007/s00705-006-0928-3. Epub 2007 Feb 12. PMID: 17294343 |
10 |
Shahid MS, et al. Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189. PMID: 24424499 |