Tomato leaf curl Java virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000842305.1 |
| Isolate |
Indonesia |
| Release date |
2015/2/12 |
| Submitter |
Kon,T., Hidayat,S.H., Hase,S., Takahashi,H., Ikegami,M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGATTTTTTTAAAGTGTCCCCCCCACTAACAAATGTCCCCCAATCAGAACGCGCCCTCAAAGCTAAATTATTAACTGGTCCCCTATTTATACTTAGTCTCCAAGTATTATGTTAAACATGTGGGATCCCCTCGTAAACGAATTCCCAGAGACTGTTCACGGTCTACGGTGTATGCTAGCCGTAAAATATCTTCAATTAGTTGAAGCTACGTATTCTCCTGATACGATTGGGTACGATCTTGTACGCGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTTAGTCACGTGGGTAAGGTCTGTTGTATAACTGACGTCACTAGGGGTTTAGGTTTGACACATAGGACGGGTAAGAGGTTTTGCGTTAAGTCCGTCTACATAATGGGCAAGGTCTGGATGGATGAGAATATCAAGACCAAGAATCACACTAACACAGTTATGTTTTTTCTAGTCCGTGATCGAAGACCTTATTCAAGTCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGACAATGAGCCAAGTACAGCTACTGTCAAGAACGATATGCGAGATCGTTTTCAGGTCTTACGGAAATTCACATCAACTGTTACTGGTGGTCAGTATGCATGCAAGGAGCAGTCTCTCGTCAAACGTTTTTTTAGAGTTAATAATCATGTAGTTTATAATCATCAAGAGGCGGGAAAGTATGAGAACCATACTGAGAACGCTCTTTTATTATATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAATAAAGATTAAATTTTATTATATGAGATTGTGTTACATATTCTGTGTTTTCCAATACATCCCATAAAACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATTCGGATCGTTATGACGTCGTGGTTGGTGTTGAATATTCTCTCGTGGTGCTTGATTATCTTGAAATAGAGGGGATTTTTGATCGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTAAATCCATGATTTGCACAGTCTATTCCGAAGTAGTAAGAACACCCGCACGTTAGATCAATTCTACGCCTGCGAACTGGCCTCCTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGACGAATTCTGCATTCTTTATAGCCCACTCTTTTAATGCCGAATTCTTCTCTTCGTCCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTGCTGTATACCTTTGGGCTCAGATCTAAATGACCGCACAAATAATTATGTGGGCCTAAAGAACGAGCCCACATCGTCTTCCCTGTACGGCTCTCACCCTCTATGACAATACTAACAGGTCTCCATGGCCGCGCAGCGGCATCCCTTACGTTTTCGGAAACCCAGCACTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAAGAAATGGACAAACAAAAACCTCTGCACGAGGTGTAAAAATCCTATCTAAATTAGCTTTAATATTATGATATTGAAAAATAAAATCTTTAGGGAGCTCCTCTCTAATAATAGCTAAAGCTGCTTCGGCTGAACCTGAATTTAGGGCCTTTGCAGCTGTGTCGTTAGCCGTCTGTTGACCTCCTCGAGCACTTCTTCCGTCGACCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATATAAGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTAGGGGATGTAAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTCCCTTCGAACTGGATAAGCACGTGCAGATGAGGGCTCCCATCTTCATGGAGTTCTCTGCAGATTTTGATGAATTTTTTATTTGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAATAATTTTTGGCATTTATTAAAAAACGTTTGGGAGGTGCCATTTGACTTGGTCAATCGGGTCTCAACAAACTTGCGTTAGCAATCGGGGAATGGGTCTCAATATATAGTGAGGACCTAAATGGCATTATTGTAATTCTCGAAAGTAATTCAAATTTCAAATTTTGAATCCAATAGCGGCCATCCGTA
Gene Information
|
NCBI Accession
|
NP_871716.1
|
|
Location
|
137-487 |
|
Gene Name
|
V2 |
|
Protein Name
|
V2 protein |
|
Coding Region
|
ATGTGGGATCCCCTCGTAAACGAATTCCCAGAGACTGTTCACGGTCTACGGTGTATGCTAGCCGTAAAATATCTTCAATTAGTTGAAGCTACGTATTCTCCTGATACGATTGGGTACGATCTTGTACGCGATTTAATTTCAGTAATTCGTGCTCGCAATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLVNEFPETVHGLRCMLAVKYLQLVEATYSPDTIGYDLVRDLISVIRARNYVEASRRYSHFHSRLEGTSSSELRHTRDEPCCCPHCPRHQQKKDMDQQAHVSQAQNVQNVQKP |
|
NCBI Accession
|
NP_871717.1
|
|
Location
|
297-1070 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCCTCGAAGGTACGTCGTCGTCTGAACTTCGACACACCCGCGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGAAGGACATGGACCAACAGGCCCATGTATCGCAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACACGATGTTAGTCACGTGGGTAAGGTCTGTTGTATAACTGACGTCACTAGGGGTTTAGGTTTGACACATAGGACGGGTAAGAGGTTTTGCGTTAAGTCCGTCTACATAATGGGCAAGGTCTGGATGGATGAGAATATCAAGACCAAGAATCACACTAACACAGTTATGTTTTTTCTAGTCCGTGATCGAAGACCTTATTCAAGTCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGACAATGAGCCAAGTACAGCTACTGTCAAGAACGATATGCGAGATCGTTTTCAGGTCTTACGGAAATTCACATCAACTGTTACTGGTGGTCAGTATGCATGCAAGGAGCAGTCTCTCGTCAAACGTTTTTTTAGAGTTAATAATCATGTAGTTTATAATCATCAAGAGGCGGGAAAGTATGAGAACCATACTGAGAACGCTCTTTTATTATATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDTPAMSRAAAPTVLVTNKRRTWTNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVSHVGKVCCITDVTRGLGLTHRTGKRFCVKSVYIMGKVWMDENIKTKNHTNTVMFFLVRDRRPYSSPQDFGQVFNMYDNEPSTATVKNDMRDRFQVLRKFTSTVTGGQYACKEQSLVKRFFRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
NP_871718.1
|
|
Location
|
1067-1471 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTTACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTCTATTTCAAGATAATCAAGCACCACGAGAGAATATTCAACACCAACCACGACGTCATAACGATCCGAATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTTTTATGGGATGTATTGGAAAACACAGAATATGTAACACAATCTCATATAATAAAATTTAATCTTTATTAA |
|
Protein Sequence
|
MDLRTGELLTATQCESGVYTWTIKNPLYFKIIKHHERIFNTNHDVITIRIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLENTEYVTQSHIIKFNLY |
|
NCBI Accession
|
NP_871719.1
|
|
Location
|
1212-1619 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGTAGAATTGATCTAACGTGCGGGTGTTCTTACTACTTCGGAATAGACTGTGCAAATCATGGATTTACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTCTATTTCAAGATAATCAAGCACCACGAGAGAATATTCAACACCAACCACGACGTCATAACGATCCGAATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQNSSPSTAHCTQVPIKVQHRIAKRRPVRRRRIDLTCGCSYYFGIDCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRENIQHQPRRHNDPNTVQSQPEESVGNTPVFSDLPDLDSLTTSDLAFLKSI |
|
NCBI Accession
|
NP_871720.1
|
|
Location
|
1525-2607 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication initiation protein |
|
Coding Region
|
ATGGCACCTCCCAAACGTTTTTTAATAAATGCCAAAAATTATTTCCTCACATACCCACAGTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAACACCCCAACAAATAAAAAATTCATCAAAATCTGCAGAGAACTCCATGAAGATGGGAGCCCTCATCTGCACGTGCTTATCCAGTTCGAAGGGAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTTACATCCCCTACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCTTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGAAGAAGTGCTCGAGGAGGTCAACAGACGGCTAACGACACAGCTGCAAAGGCCCTAAATTCAGGTTCAGCCGAAGCAGCTTTAGCTATTATTAGAGAGGAGCTCCCTAAAGATTTTATTTTTCAATATCATAATATTAAAGCTAATTTAGATAGGATTTTTACACCTCGTGCAGAGGTTTTTGTTTGTCCATTTCTTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAGTGCTGGGTTTCCGAAAACGTAAGGGATGCCGCTGCGCGGCCATGGAGACCTGTTAGTATTGTCATAGAGGGTGAGAGCCGTACAGGGAAGACGATGTGGGCTCGTTCTTTAGGCCCACATAATTATTTGTGCGGTCATTTAGATCTGAGCCCAAAGGTATACAGCAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTACTTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTTTGCAATCCAGGCCCAACATCATCATATAAAGAGTACTTGGACGAAGAGAAGAATTCGGCATTAAAAGAGTGGGCTATAAAGAATGCAGAATTCGTCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGTAG |
|
Protein Sequence
|
MAPPKRFLINAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKFIKICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGQQTANDTAAKALNSGSAEAALAIIREELPKDFIFQYHNIKANLDRIFTPRAEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWAIKNAEFVTLNSPLYSGTNQSATQNSQEEASSQA |
|
NCBI Accession
|
NP_871721.1
|
|
Location
|
2193-2456 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGAAGATGGGAGCCCTCATCTGCACGTGCTTATCCAGTTCGAAGGGAAATTCAAGTGCCAAAATAACAGATTCTTCGACCTTACATCCCCTACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCTTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGAAGAAGTGCTCGAGGAGGTCAACAGACGGCTAACGACACAGCTGCAAAGGCCCTAA |
|
Protein Sequence
|
MKMGALICTCLSSSKGNSSAKITDSSTLHPLPGQHISIRTFRELNQAPTSSLISTRTETHWNGENSRSTEEVLEEVNRRLTTQLQRP |