Tomato leaf curl Japan virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004786335.1
Isolate Japan: Miyazaki
Release date 2021/6/1
Submitter Ueda,S., Onuki,M., Hanada,K., Takanami,Y.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055124
ACCGGATGGGCGCCCGAAATTTCGTATTGGGCCCCCCTTGTCGGCCAATGATGTTCGTGCCTTGAACGCTAGATAAGTGGATAGTGACATCACTTTTGTCTTTATATACGTCAGCCCTAATTTTAAAGGTATAACATGTGGGATCCTTTACTTAACGATTTCCCTGAAACCGTTCACGGTTTCAGGTGTATGCTAGCGGTTAAGTACCTTCTACTCGTTGAAGCTACCTACTCTCCGGATACTATAGGTTACGATCTGATTCGTGATCTTGTGGGTGTTGTTCGTGCCAAGAACTATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACTCCCGTCTCCAGAGCACGACGCCGTCTGAACTTCGACAGCCCGTTGCTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAAGAGATCATGGGCTCAGAGGCCCATGTATCGGAAGCCCAAGATGTACAGAATGTACAGAAGTCCTGATATCCCCAAGGGGTGTGAAGGCCCGTGTAAGGTCCAGTCTTTCGAGAAGAAAGACGATGTTGGTCATTCTGGTAAAATGCTCTGTATTTCTGATATCACCCGTGGCAACGGACTTAATCACCGTGTTGGGAAGAGATTTGGTATAAAATCTGTTTACATTATGGGAAAGATCTGGATGGATGAGAATATTAAGCTTAAAAATCACACTAACAACGTTTTATTTTGGTTAGTTAGAGATAGACGCCCTGTTACTACCCCTTATGCATTCCAAGAGGCATTTAATATGTTTGAGATGGAACCCAGTACGGCTACTATCAAGCAGGATTTGAGAGATCGGTTGCAGGTCTTACACAAGTTCAGTGCTACTGTCACTGGTGGACAGTATGCGTCCAGGGAGCAAGCTCTTATCAAGAGATTCTGGAAGTTGAATCATCATGTCACTTACAATCATCAAGAAGCTGCTAAATATGAGAATCACACTGAAAATGCTTTGTTATTGTATATGGCTTGCACTCATGCCAGTAATCCAGTGTATGCAACATTAAAAATTAGAGTGTATTTCTATGATTCAGAACAGAATTAATAAAGTTTGAATTTTATATCAGTAAATTGTTGAACAAACTCCGTTCCTTCTAATACATCATACAATACATATTCAACTGCCCTTATTACATTGTTAATTGAAATAACACCCAAGTTATCTAAATACATCAACACATGTTCCCTAAATAAATTCAAGAAATGCGAGTTCTGATGATGTGAGAGAGTCCAAATCTTGAAAGTCAGGAAGCACTTGTGTAAATCCAGCTGAGATCGGAGGTTGTGGTTGAATTGTATCTGTACTGTGATTATGTCCTGATTCATGTTGAATGGCCGTTGGGCGTGATTCGTGATTTTGAAATATAGGGGATTTGGCACTGTCCAAGTATACGCGCCACTCTGTGCCTGAGCTGCAGTGATGGTGACCCCTGTGCGTGAATCCATAATTTGCACACCCTAAGCTAACGTATATAGAACACCCGCAGTTTAGATCAATCCTCCTCCTGCGGGGTTGTCTCTTCTTCCCTATCTTGTGCTGGACTTTGATGGGTACCTGAGTAGAGTGGGCCGTAGAGGGTGACGAAGGTTGCATTTTTAATTGCCCAGTGTTTCAAAGATGCATTCTTCTCCTCGTTTAAATACTCAGTGTATGATGACGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGTAGTGGGGATCCACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTGTAAACCTTGGGGCTTAAGTCAAGGTGGCCGCAAAGGTAGTTATGACGTGGATGTAGAGATCTGGCCCACATAGTCTTCCCTGTCCTGCTATCCCCTTCAATCACAATACTCATGGGCCTCCACGGCCGCGCAGCGGAATCCCTGACGTTCTCGGCAGCCCATTCTTCAAGTTGCTCTGGAACTTGATCAAAGGAAGAAGATAAAAAAGGAGAAACAAATTCCTCCAACAGAGGAGCAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAATATAATCTTTGGGAGCTTTCTCCCTTAATATAGACAAGGCCGATGACTTGGACCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGACTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCAAAATCAAGGATGTCCCCGTCTTTTTCCATGTAGGTCTTGACATCTGACGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGATACGAGATCGAAGAATCGTTGATTTCGGCATGTATATTTTCCTTCGAATTGGATGAGGACGTGGAGATGAGGGCTCCCATCTTCGTGTAGTTCACGACAAATTCGGATGAATAATTTATTAGTTGGGGTTTGTAGGGCTTGTATTTGGGAGAGAGCCTCTTCTTTTGTAAGAGAGCAGTGTGGGTATGTGAGAAAATAATTCTTGGCATTTATTTTAAAACGATTTGGGGTAGGCATGTTGACTGGTCAATCGGGAGGCTCTCAATCTTTCTATGCAATTGGGGGCATTGGGGGCTTATTTATATGGTAGCCTCTAATGGCATATTTGTAATTTTGAAATTCAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCCGTATAATATT

Gene Information

NCBI Accession YP_010084308.1
Location 136-486
Gene Name V2
Protein Name V2
Coding Region ATGTGGGATCCTTTACTTAACGATTTCCCTGAAACCGTTCACGGTTTCAGGTGTATGCTAGCGGTTAAGTACCTTCTACTCGTTGAAGCTACCTACTCTCCGGATACTATAGGTTACGATCTGATTCGTGATCTTGTGGGTGTTGTTCGTGCCAAGAACTATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACTCCCGTCTCCAGAGCACGACGCCGTCTGAACTTCGACAGCCCGTTGCTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAAGAGATCATGGGCTCAGAGGCCCATGTATCGGAAGCCCAAGATGTACAGAATGTACAGAAGTCCTGA
Protein Sequence MWDPLLNDFPETVHGFRCMLAVKYLLLVEATYSPDTIGYDLIRDLVGVVRAKNYVEASCRYRNFHSRLQSTTPSELRQPVAQPCECPHCPRHKQKEIMGSEAHVSEAQDVQNVQKS

NCBI Accession YP_010084309.1
Location 296-1069
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCAGATATAGGAATTTTCACTCCCGTCTCCAGAGCACGACGCCGTCTGAACTTCGACAGCCCGTTGCTCAGCCGTGCGAGTGCCCCCATTGCCCTCGTCACAAACAAAAAGAGATCATGGGCTCAGAGGCCCATGTATCGGAAGCCCAAGATGTACAGAATGTACAGAAGTCCTGATATCCCCAAGGGGTGTGAAGGCCCGTGTAAGGTCCAGTCTTTCGAGAAGAAAGACGATGTTGGTCATTCTGGTAAAATGCTCTGTATTTCTGATATCACCCGTGGCAACGGACTTAATCACCGTGTTGGGAAGAGATTTGGTATAAAATCTGTTTACATTATGGGAAAGATCTGGATGGATGAGAATATTAAGCTTAAAAATCACACTAACAACGTTTTATTTTGGTTAGTTAGAGATAGACGCCCTGTTACTACCCCTTATGCATTCCAAGAGGCATTTAATATGTTTGAGATGGAACCCAGTACGGCTACTATCAAGCAGGATTTGAGAGATCGGTTGCAGGTCTTACACAAGTTCAGTGCTACTGTCACTGGTGGACAGTATGCGTCCAGGGAGCAAGCTCTTATCAAGAGATTCTGGAAGTTGAATCATCATGTCACTTACAATCATCAAGAAGCTGCTAAATATGAGAATCACACTGAAAATGCTTTGTTATTGTATATGGCTTGCACTCATGCCAGTAATCCAGTGTATGCAACATTAAAAATTAGAGTGTATTTCTATGATTCAGAACAGAATTAA
Protein Sequence MSKRPADIGIFTPVSRARRRLNFDSPLLSRASAPIALVTNKKRSWAQRPMYRKPKMYRMYRSPDIPKGCEGPCKVQSFEKKDDVGHSGKMLCISDITRGNGLNHRVGKRFGIKSVYIMGKIWMDENIKLKNHTNNVLFWLVRDRRPVTTPYAFQEAFNMFEMEPSTATIKQDLRDRLQVLHKFSATVTGGQYASREQALIKRFWKLNHHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSEQN

NCBI Accession YP_010084310.1
Location 1066-1470
Gene Name C3
Protein Name C3
Coding Region ATGGATTCACGCACAGGGGTCACCATCACTGCAGCTCAGGCACAGAGTGGCGCGTATACTTGGACAGTGCCAAATCCCCTATATTTCAAAATCACGAATCACGCCCAACGGCCATTCAACATGAATCAGGACATAATCACAGTACAGATACAATTCAACCACAACCTCCGATCTCAGCTGGATTTACACAAGTGCTTCCTGACTTTCAAGATTTGGACTCTCTCACATCATCAGAACTCGCATTTCTTGAATTTATTTAGGGAACATGTGTTGATGTATTTAGATAACTTGGGTGTTATTTCAATTAACAATGTAATAAGGGCAGTTGAATATGTATTGTATGATGTATTAGAAGGAACGGAGTTTGTTCAACAATTTACTGATATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGVTITAAQAQSGAYTWTVPNPLYFKITNHAQRPFNMNQDIITVQIQFNHNLRSQLDLHKCFLTFKIWTLSHHQNSHFLNLFREHVLMYLDNLGVISINNVIRAVEYVLYDVLEGTEFVQQFTDIKFKLY

NCBI Accession YP_010084311.1
Location 1211-1618
Gene Name C2
Protein Name C2
Coding Region ATGCAACCTTCGTCACCCTCTACGGCCCACTCTACTCAGGTACCCATCAAAGTCCAGCACAAGATAGGGAAGAAGAGACAACCCCGCAGGAGGAGGATTGATCTAAACTGCGGGTGTTCTATATACGTTAGCTTAGGGTGTGCAAATTATGGATTCACGCACAGGGGTCACCATCACTGCAGCTCAGGCACAGAGTGGCGCGTATACTTGGACAGTGCCAAATCCCCTATATTTCAAAATCACGAATCACGCCCAACGGCCATTCAACATGAATCAGGACATAATCACAGTACAGATACAATTCAACCACAACCTCCGATCTCAGCTGGATTTACACAAGTGCTTCCTGACTTTCAAGATTTGGACTCTCTCACATCATCAGAACTCGCATTTCTTGAATTTATTTAG
Protein Sequence MQPSSPSTAHSTQVPIKVQHKIGKKRQPRRRRIDLNCGCSIYVSLGCANYGFTHRGHHHCSSGTEWRVYLDSAKSPIFQNHESRPTAIQHESGHNHSTDTIQPQPPISAGFTQVLPDFQDLDSLTSSELAFLEFI

NCBI Accession YP_010084312.1
Location 1518-2609
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCTACCCCAAATCGTTTTAAAATAAATGCCAAGAATTATTTTCTCACATACCCACACTGCTCTCTTACAAAAGAAGAGGCTCTCTCCCAAATACAAGCCCTACAAACCCCAACTAATAAATTATTCATCCGAATTTGTCGTGAACTACACGAAGATGGGAGCCCTCATCTCCACGTCCTCATCCAATTCGAAGGAAAATATACATGCCGAAATCAACGATTCTTCGATCTCGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGATGTCAAGACCTACATGGAAAAAGACGGGGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAGTCATCGGCCTTGTCTATATTAAGGGAGAAAGCTCCCAAAGATTATATTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTGCTCCTCTGTTGGAGGAATTTGTTTCTCCTTTTTTATCTTCTTCCTTTGATCAAGTTCCAGAGCAACTTGAAGAATGGGCTGCCGAGAACGTCAGGGATTCCGCTGCGCGGCCGTGGAGGCCCATGAGTATTGTGATTGAAGGGGATAGCAGGACAGGGAAGACTATGTGGGCCAGATCTCTACATCCACGTCATAACTACCTTTGCGGCCACCTTGACTTAAGCCCCAAGGTTTACAGCAACGAGGCCTGGTACAACGTCATTGATGACGTGGATCCCCACTACCTAAAACACTTTAAAGAATTCATGGGGGCCCAGAGAGACTGGCAAAGCAACACCAAGTACGGGAAACCAATTCAAATTAAAGGTGGTATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACGTCATCATACACTGAGTATTTAAACGAGGAGAAGAATGCATCTTTGAAACACTGGGCAATTAAAAATGCAACCTTCGTCACCCTCTACGGCCCACTCTACTCAGGTACCCATCAAAGTCCAGCACAAGATAGGGAAGAAGAGACAACCCCGCAGGAGGAGGATTGA
Protein Sequence MPTPNRFKINAKNYFLTYPHCSLTKEEALSQIQALQTPTNKLFIRICRELHEDGSPHLHVLIQFEGKYTCRNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDILDFGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDYILQFHNLNSNLDRIFAPLLEEFVSPFLSSSFDQVPEQLEEWAAENVRDSAARPWRPMSIVIEGDSRTGKTMWARSLHPRHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYTEYLNEEKNASLKHWAIKNATFVTLYGPLYSGTHQSPAQDREEETTPQEED

NCBI Accession YP_010084313.1
Location 2159-2581
Gene Name C4
Protein Name C4
Coding Region ATGCCAAGAATTATTTTCTCACATACCCACACTGCTCTCTTACAAAAGAAGAGGCTCTCTCCCAAATACAAGCCCTACAAACCCCAACTAATAAATTATTCATCCGAATTTGTCGTGAACTACACGAAGATGGGAGCCCTCATCTCCACGTCCTCATCCAATTCGAAGGAAAATATACATGCCGAAATCAACGATTCTTCGATCTCGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGATGTCAAGACCTACATGGAAAAAGACGGGGACATCCTTGATTTTGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAGTCTGCCAACGACGCATATGCCGAGGCAATCAACTCAGGGTCCAAGTCATCGGCCTTGTCTATATTAA
Protein Sequence MPRIIFSHTHTALLQKKRLSPKYKPYKPQLINYSSEFVVNYTKMGALISTSSSNSKENIHAEINDSSISYPQLGQHISIRTFRELRARQMSRPTWKKTGTSLILEFSKSMEDQLEEVASLPTTHMPRQSTQGPSHRPCLY

References More References in PubMed

1

Breakdown of Ty-1-Based Resistance to Tomato Yellow Leaf Curl Virus in Tomato Plants at High Temperatures.

Koeda S, et al.  Phytopathology. 2024 Jan;114(1):294-303. doi: 10.1094/PHYTO-04-23-0119-R. Epub 2024 Feb 12.

PMID: 37321561
2

Identification of Tomato yellow leaf curl virus Naturally Infecting Common Bean in Japan.

Shahid MS, et al.  Plant Dis. 2014 Oct;98(10):1447. doi: 10.1094/PDIS-03-14-0316-PDN.

PMID: 30703986
3

Complete Genome Sequence of Tomato Leaf Curl New Delhi Virus from Luffa in Indonesia.

Wilisiani F, et al.  Microbiol Resour Announc. 2019 Apr 11;8(15):e01605-18. doi: 10.1128/MRA.01605-18.

PMID: 30975814
4

Pepper yellow leaf curl Aceh virus: a novel bipartite begomovirus isolated from chili pepper, tomato, and tobacco plants in Indonesia.

Kesumawati E, et al.  Arch Virol. 2019 Sep;164(9):2379-2383. doi: 10.1007/s00705-019-04316-8. Epub 2019 Jun 15.

PMID: 31203434
5

Ty-2 and Ty-3a Conferred Resistance are Insufficient Against Tomato Yellow Leaf Curl Kanchanaburi Virus from Southeast Asia in Single or Mixed Infections of Tomato.

Koeda S, et al.  Plant Dis. 2020 Dec;104(12):3221-3229. doi: 10.1094/PDIS-03-20-0613-RE. Epub 2020 Oct 12.

PMID: 33044916
6

Resistance to the Insect Vector Bemisia tabaci Enhances the Robustness and Durability of Tomato Yellow Leaf Curl Virus Resistance Conferred by Ty-1.

Koeda S, et al.  Plant Dis. 2025 Feb;109(2):399-409. doi: 10.1094/PDIS-06-24-1281-RE. Epub 2025 Feb 5.

PMID: 39306688
7

First Report of Tomato yellow leaf curl virus in China.

Wu JB, et al.  Plant Dis. 2006 Oct;90(10):1359. doi: 10.1094/PD-90-1359C.

PMID: 30780951
8

Interaction of tomato yellow leaf curl virus with diverse betasatellites enhances symptom severity.

Ito T, et al.  Arch Virol. 2009;154(8):1233-9. doi: 10.1007/s00705-009-0431-8. Epub 2009 Jul 3.

PMID: 19575277
9

First Report of Tomato yellow leaf curl virus Infecting Eustoma (Eustoma grandiflorum) in Korea.

Kil EJ, et al.  Plant Dis. 2014 Aug;98(8):1163. doi: 10.1094/PDIS-02-14-0162-PDN.

PMID: 30708805
10

Association of an alphasatellite with tomato yellow leaf curl virus and ageratum yellow vein virus in Japan is suggestive of a recent introduction.

Shahid MS, et al.  Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189.

PMID: 24424499