Tomato leaf curl Iran virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000845745.1
Isolate Iran: Iranshahr
Release date 2015/2/12
Submitter Behjatnia,A., Izadpanah,K., Dry,I.B., Rezaian,A.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_005842
ACCGGATGGCCGCGAATTTTTTGTGGGCCCTTCAACGTACTAACTGACAAGGACATGCGAACCAATCATATGACGCGCTCAAAGCCTAATTATTTTGTGGTCCCCTATTTAAACTTCGTCCCTAAGTAGTATCTTTTGTACTATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGACTTATTCCCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGTTTCGAAGGTACGCCGTCGTCTCAGCTTCGACAGCCCATATGTGAACCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAGGCAAAGGCATGGGCGAACAGGCCCATGTACCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCCAAGGGATGTGAAGGCCCATGTAAGGTCCAATCTTTCGATGCTAAGAACGATATTGGTCATATGGGTAAGGTTATATGTTTGTCTGATGTCACGAGGGGAATGGGTTTGACCCATCGAGTAGGGAAACGTTTCTGTGTGAAGTCTTTGTATTTTGTCGGCAAGATTTGGATGGACGAGAACATCAAAACCAAGAACCATACTAATACTGTTTTGTTCTGGATTGTGAGAGACAGGCGTCCTACAGGAACCCCAAATGATTTCCAACAAGTGTTCAATGTTTATGATAATGAGCCTTCTACGGCTACTGTGAAGAACGACCAGCGTGATCGTTTTCAGGTGCTGAGGAGGTTTCAAGCAACAGTCACAGGCGGTCAATATGCTGCTAAGGAACAAGCTATAATTAGGAAGTTCTATCGTGTTAATAACTATGTGGTTTATAATCATCAAGAAGCTGGGAAGTATGAGAATCACACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAAGATTAATAAAGATTGAATTTTATTGAATATGATTGGTCTACATATACAACGTGGTGTAATACATTCCATAATACATGATCAACTGCTCTATTTACATTGTTAATACTTATAACTCTTAAATTATTTAAATACTTAAGTATTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGATGTCATCCAGATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTGATGATGTCTTGGTTCATCAGGAATGGCCGGTTGTGGTGTTCTGTTATCTTGAAATATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTCGTGGCAGGCTAATGCTATGAAGTAAGAGCAGCCACACGGTAGATCAACTCGTCGACGCCTGGTCCCTCTCTTGGCTAGCCTGTGTTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTCAAAGCCCAGTTTTTAAGTGCAAAATTCTTGTCTTCATCCAAGAACTCTTTATAACTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCATTCTCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGATGTTGTACCAGGCATCATTACTGTAGATTTTTGGGCTAAGGTCTAGATGACCACATAGATAATTATGTGGACCCAACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACTCTCAATAACAATACTTATGGGCCTAATGGGCCGCGCAGTGGTATCGGCAATATTTTCGCAAGCCCACTCTTCAAGTTCTACTGGAACTTGATCGAATGAAGAGGAAGAAAAAGGTGAAACATAAGGAGCTGGTGGCTCCTGAAAATATCTATCTAAATTTGAATTTAAATTATGAAATTGAAGTAGAAAGTCTCTAGGAGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATATAGGATTTGACATCGCTTGAACTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTGTTGTTTTTGCACTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCTTCATGAAGCTCTCTGCAAATTCTAATAAATTTTTTGGAAGTGGGTGTTTGTAGATTTAATGATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCATTTGGGAAAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGCTGCCATATTGACTTGGTCAATCGGAGTCTCTCAACTCTTTCTATGTATTGGTGTATTGGAGTCCTATATATATGGAGACTCCAATGGCATATATGTAAATATTGTACTTTAATTCAAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_006422.1
Location 143-490
Protein Name V1 protein
Coding Region ATGTGGGATCCATTGTTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGCAGAAAAGACTTATTCCCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTAATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGTTTCGAAGGTACGCCGTCGTCTCAGCTTCGACAGCCCATATGTGAACCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAGGCAAAGGCATGGGCGAACAGGCCCATGTACCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLAEKTYSPDTLGYDLIRDLISVIRARNYVEASSRYNHFHARFEGTPSSQLRQPICEPCCCPHCPRHQGKGMGEQAHVPEAQNVQDVQKP

NCBI Accession YP_006423.1
Location 303-1073
Protein Name V2 protein
Coding Region ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGTTTCGAAGGTACGCCGTCGTCTCAGCTTCGACAGCCCATATGTGAACCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAGGCAAAGGCATGGGCGAACAGGCCCATGTACCGGAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCCAAGGGATGTGAAGGCCCATGTAAGGTCCAATCTTTCGATGCTAAGAACGATATTGGTCATATGGGTAAGGTTATATGTTTGTCTGATGTCACGAGGGGAATGGGTTTGACCCATCGAGTAGGGAAACGTTTCTGTGTGAAGTCTTTGTATTTTGTCGGCAAGATTTGGATGGACGAGAACATCAAAACCAAGAACCATACTAATACTGTTTTGTTCTGGATTGTGAGAGACAGGCGTCCTACAGGAACCCCAAATGATTTCCAACAAGTGTTCAATGTTTATGATAATGAGCCTTCTACGGCTACTGTGAAGAACGACCAGCGTGATCGTTTTCAGGTGCTGAGGAGGTTTCAAGCAACAGTCACAGGCGGTCAATATGCTGCTAAGGAACAAGCTATAATTAGGAAGTTCTATCGTGTTAATAACTATGTGGTTTATAATCATCAAGAAGCTGGGAAGTATGAGAATCACACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACTTTGAAAGTTAGGAGTTACTTCTACGATTCTGTAACAAATTAA
Protein Sequence MSKRPADIIISTPVSKVRRRLSFDSPYVNRAAAPIVRVTKAKAWANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGMGLTHRVGKRFCVKSLYFVGKIWMDENIKTKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEPSTATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession YP_006424.1
Location 1076-1480
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAACACCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACATCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAGACCCAAATACTTAAGTATTTAAATAATTTAAGAGTTATAAGTATTAACAATGTAAATAGAGCAGTTGATCATGTATTATGGAATGTATTACACCACGTTGTATATGTAGACCAATCATATTCAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDIITVQVQFNHNLRKVLGIHKCFLVYRIWMTSQPPTGRFLRVFKTQILKYLNNLRVISINNVNRAVDHVLWNVLHHVVYVDQSYSIKFNLY

NCBI Accession YP_006425.1
Location 1221-1625
Protein Name C2 protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAGAGGGACCAGGCGTCGACGAGTTGATCTACCGTGTGGCTGCTCTTACTTCATAGCATTAGCCTGCCACGACCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAACACCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACATCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRTPQPAIPDEPRHHHRPSTVQSQPEESVGDTQMFPSLPNLDDITASDWSFLKGI

NCBI Accession YP_006426.1
Location 1528-2613
Protein Name C1 protein
Coding Region ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTTTCCCAAATGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATCATTAAATCTACAAACACCCACTTCCAAAAAATTTATTAGAATTTGCAGAGAGCTTCATGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAACAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGTTCAAGCGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCTAGAGACTTTCTACTTCAATTTCATAATTTAAATTCAAATTTAGATAGATATTTTCAGGAGCCACCAGCTCCTTATGTTTCACCTTTTTCTTCCTCTTCATTCGATCAAGTTCCAGTAGAACTTGAAGAGTGGGCTTGCGAAAATATTGCCGATACCACTGCGCGGCCCATTAGGCCCATAAGTATTGTTATTGAGAGTGATAGTCGTACTGGTAAAACAATGTGGGCTAGGTCGTTGGGTCCACATAATTATCTATGTGGTCATCTAGACCTTAGCCCAAAAATCTACAGTAATGATGCCTGGTACAACATCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGAGAATGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCCAGTTATAAAGAGTTCTTGGATGAAGACAAGAATTTTGCACTTAAAAACTGGGCTTTGAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGGCTAGCCAAGAGAGGGACCAGGCGTCGACGAGTTGA
Protein Sequence MAAPNRFKINAKNYFLTFPKCSLTKEEALSQSLNLQTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFLLQFHNLNSNLDRYFQEPPAPYVSPFSSSSFDQVPVELEEWACENIADTTARPIRPISIVIESDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNIIDDVDPHYLKHFKEFMGAQREWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNFALKNWALKNAIFVTLEGPLYSGSNQSATQASQERDQASTS

NCBI Accession YP_006427.1
Location 2163-2462
Protein Name C4 protein
Coding Region ATGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAACAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGTTCAAGCGATGTCAAATCCTATATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA
Protein Sequence MKMGLLTCMCSSSSKESSSAKTTDSSTSHPQPGQHISIRTFRELRVQAMSNPIWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022

2

First Report of Tomato Yellow Leaf Curl Virus Infecting Pepper and Tomato in Oklahoma.

Paslay C, et al.  Plant Dis. 2022 Aug 12. doi: 10.1094/PDIS-04-22-0927-PDN. Online ahead of print.

PMID: 35961018

3

No Evidence for Seed Transmission of Tomato Yellow Leaf Curl Sardinia Virus in Tomato.

Tabein S, et al.  Cells. 2021 Jul 2;10(7):1673. doi: 10.3390/cells10071673.

PMID: 34359841

4

Virus-induced CRISPR-Cas9 system improved resistance against tomato yellow leaf curl virus.

Ghorbani Faal P, et al.  Mol Biol Rep. 2020 May;47(5):3369-3376. doi: 10.1007/s11033-020-05409-3. Epub 2020 Apr 15.

PMID: 32297291

5

Natural Occurrence of Tomato leaf curl New Delhi virus in Iranian Cucurbit Crops.

Yazdani-Khameneh S, et al.  Plant Pathol J. 2016 Jun;32(3):201-8. doi: 10.5423/PPJ.OA.10.2015.0210. Epub 2016 Jun 1.

PMID: 27298595

6

First Report of Tomato leaf curl Palampur virus on Bitter Gourd in Pakistan.

Ali I, et al.  Plant Dis. 2010 Feb;94(2):276. doi: 10.1094/PDIS-94-2-0276A.

PMID: 30754274

7

Complete sequences of tomato leaf curl Palampur virus isolates infecting cucurbits in Iran.

Heydarnejad J, et al.  Arch Virol. 2009;154(6):1015-8. doi: 10.1007/s00705-009-0389-6. Epub 2009 May 8.

PMID: 19424773

8

Localized surface plasmon resonance biosensing of tomato yellow leaf curl virus.

Razmi A, et al.  J Virol Methods. 2019 May;267:1-7. doi: 10.1016/j.jviromet.2019.02.004. Epub 2019 Feb 13.

PMID: 30771384

9

Analysis of watermelon chlorotic stunt virus and tomato leaf curl Palampur virus mixed and pseudo-recombination infections.

Esmaeili M, et al.  Virus Genes. 2015 Dec;51(3):408-16. doi: 10.1007/s11262-015-1250-5. Epub 2015 Oct 3.

PMID: 26433951

10

Ongoing geographical spread of Tomato yellow leaf curl virus.

Mabvakure B, et al.  Virology. 2016 Nov;498:257-264. doi: 10.1016/j.virol.2016.08.033. Epub 2016 Sep 15.

PMID: 27619929