Tomato leaf curl Hainan virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000885835.1 |
| Isolate |
China:Hainan province |
| Release date |
2015/2/22 |
| Submitter |
Zhang,H., Hu,G., Zhou,X., Zhou,X.P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAATGGTCCCCACCACTAACAAATGTGCTCCACTTAGAACGCTCCCTCAAATCCTATTTAATTCAAATCCATTATATATACTTGGTCCCCAAGTACTCACGTCAAACATGTGGGATCCTTTACTAAACGAGTTTCCCGAAACCGTACACGGTTTTAGGTGTATGTTAGCCATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCTGATACATTAGGGTACGATTTGATTCGTGATTTAATTTCAGTTATTCGTGCTAAGGACTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTATGAACAGCGTCATGATGTAGCGCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAACGGGTTGACTCATCGTGTGGGAAAGAGGTTTTGTGTTAAGTCTGTTTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCACACTAATACTGTGATGTTTTTTTTAGTTCGTGATAGGAGACCATTTGGGACTCCACAGGATTTTGGTCAGGTTTTTAATATGTATGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATAACAGAGATCGCTTTCAAGTTCTACGCCGTTTTCAGGCGACTGTTACTGATGGTCAGTATGCAAGTAAGGAGCAGGCGTTGGTTAGGAAATTTATGAAGGTTAACAACCATGTGACCTATAACCATCAAGAAGCCGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATATTTGAATGTGTTACATATTCTGTTTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAGGTCTGAGGACGTAAATGAGTCCAGATCTGGAAGATTAGAAAACATTGGTGTATTCCCAACGCTTTCCTCAGGTTGTAATTGAATTGGACTTGTATTGTGATGATGTCGTGGTTCATCAGAAATGGTCTCTCGTCGTGGCTGATTATCTTGAAATATAGGGGATTTTTGACCGTCCAGATATATACGCCACTCTCTGCTTGAGCTGCAGTGATAGCTTCCCCTGTGCGAGAATCCATGATTGTGACAGCCTAGTGCAATGAAGTATGAACAGCCACAAGGGAGATCAACTCTCCGTCTCCTCGTTGCTTTCTTGGCGTTGCGGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGCGCTTTGGAGGGTGACGAAGATCGCATTTTTTATTGCCCAGTGTTTGAGTGCGCTGTTTTTCTCTTCGTCCAAGAATTCTTTATAGCTTGAATTGGGGCCGGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAACGGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCGACTATCGCCCTCTATGACTATACTTATTGGTCGTAATGGCCGCGCAGCGGCACTGACAACGTTCTCTGCAGCCCACTCTTCGAGTTCTTCTGGAACTCGATCAAACGAAGAGGAAGAAAAAGGAGAAACGTAAACCTCCATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGCTTTGACGTCTGTTGAGCTTTTAGCGCTCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTTCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAATTCCCTGCAGATTCGAATGAATAATTTATTGGTTGGTGTCGTTAGGGCTAAAAATTGGGAAAGTGCTTCTTCTTTGCTTAGTGAGCAATGTGGGTATGTGAGGAAATAGTTTTTGGCATTTATTAGAAATTTTTTGGGCGGAGGCATGTTGACTTGGTCAATCGGGTCCTCTCAAACTTAGCTATGCAATCGGGGAATGGGTCCTTATTTATATGTGAGGACCTAAATGGCACAATTGTAAATTACCAAAAGAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_003104746.1
|
|
Location
|
186-482 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTTAGCCATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCTGATACATTAGGGTACGATTTGATTCGTGATTTAATTTCAGTTATTCGTGCTAAGGACTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MLAIKYLQLVENTYSPDTLGYDLIRDLISVIRAKDYVEASRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGQSAHVPKAQDVQDVQKP |
|
NCBI Accession
|
YP_003104747.1
|
|
Location
|
292-1065 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTATGAACAGCGTCATGATGTAGCGCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAACGGGTTGACTCATCGTGTGGGAAAGAGGTTTTGTGTTAAGTCTGTTTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCACACTAATACTGTGATGTTTTTTTTAGTTCGTGATAGGAGACCATTTGGGACTCCACAGGATTTTGGTCAGGTTTTTAATATGTATGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATAACAGAGATCGCTTTCAAGTTCTACGCCGTTTTCAGGCGACTGTTACTGATGGTCAGTATGCAAGTAAGGAGCAGGCGTTGGTTAGGAAATTTATGAAGGTTAACAACCATGTGACCTATAACCATCAAGAAGCCGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSWVNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTDGQYASKEQALVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_003104748.1
|
|
Location
|
1062-1466 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAAACAGAATATGTAACACATTCAAATATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGEAITAAQAESGVYIWTVKNPLYFKIISHDERPFLMNHDIITIQVQFNYNLRKALGIHQCFLIFQIWTHLRPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVTHSNIIKFNLY |
|
NCBI Accession
|
YP_003104749.1
|
|
Location
|
1207-1611 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGATCTCCCTTGTGGCTGTTCATACTTCATTGCACTAGGCTGTCACAATCATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MRSSSPSKAHSTQVPIKVQHRNAKKATRRRRVDLPCGCSYFIALGCHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQPEESVGNTPMFSNLPDLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_003104750.1
|
|
Location
|
1514-2599 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGCCTCCGCCCAAAAAATTTCTAATAAATGCCAAAAACTATTTCCTCACATACCCACATTGCTCACTAAGCAAAGAAGAAGCACTTTCCCAATTTTTAGCCCTAACGACACCAACCAATAAATTATTCATTCGAATCTGCAGGGAATTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATGGAGGTTTACGTTTCTCCTTTTTCTTCCTCTTCGTTTGATCGAGTTCCAGAAGAACTCGAAGAGTGGGCTGCAGAGAACGTTGTCAGTGCCGCTGCGCGGCCATTACGACCAATAAGTATAGTCATAGAGGGCGATAGTCGGACGGGGAAGACGATGTGGGCTCGATCATTGGGTCCACACAATTATCTGTGTGGTCATCTTGATTTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAACCCGTTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCCGGCCCCAATTCAAGCTATAAAGAATTCTTGGACGAAGAGAAAAACAGCGCACTCAAACACTGGGCAATAAAAAATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGA |
|
Protein Sequence
|
MPPPKKFLINAKNYFLTYPHCSLSKEEALSQFLALTTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKHWAIKNAIFVTLQSALYSGSYQGATPQRQESNEETES |
|
NCBI Accession
|
YP_003104751.1
|
|
Location
|
2149-2442 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAA |
|
Protein Sequence
|
MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQQTSKPTWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKLRPSIY |