Genus | Begomovirus |
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NCBI Assembly | GCF_000885835.1 |
Isolate | China:Hainan province |
Release date | 2015/2/22 |
Submitter | Zhang,H., Hu,G., Zhou,X., Zhou,X.P. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_003104746.1 |
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Location | 186-482 |
Gene Name | AV2 |
Protein Name | AV2 protein |
Coding Region | ATGTTAGCCATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCTGATACATTAGGGTACGATTTGATTCGTGATTTAATTTCAGTTATTCGTGCTAAGGACTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGA |
Protein Sequence | MLAIKYLQLVENTYSPDTLGYDLIRDLISVIRAKDYVEASRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGQSAHVPKAQDVQDVQKP |
NCBI Accession | YP_003104747.1 |
---|---|
Location | 292-1065 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTATGAACAGCGTCATGATGTAGCGCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAACGGGTTGACTCATCGTGTGGGAAAGAGGTTTTGTGTTAAGTCTGTTTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCACACTAATACTGTGATGTTTTTTTTAGTTCGTGATAGGAGACCATTTGGGACTCCACAGGATTTTGGTCAGGTTTTTAATATGTATGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATAACAGAGATCGCTTTCAAGTTCTACGCCGTTTTCAGGCGACTGTTACTGATGGTCAGTATGCAAGTAAGGAGCAGGCGTTGGTTAGGAAATTTATGAAGGTTAACAACCATGTGACCTATAACCATCAAGAAGCCGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA |
Protein Sequence | MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSWVNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTDGQYASKEQALVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession | YP_003104748.1 |
---|---|
Location | 1062-1466 |
Gene Name | AC3 |
Protein Name | AC3 protein |
Coding Region | ATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAAACAGAATATGTAACACATTCAAATATAATAAAATTCAATCTTTATTAA |
Protein Sequence | MDSRTGEAITAAQAESGVYIWTVKNPLYFKIISHDERPFLMNHDIITIQVQFNYNLRKALGIHQCFLIFQIWTHLRPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVTHSNIIKFNLY |
NCBI Accession | YP_003104749.1 |
---|---|
Location | 1207-1611 |
Gene Name | AC2 |
Protein Name | AC2 protein |
Coding Region | ATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGATCTCCCTTGTGGCTGTTCATACTTCATTGCACTAGGCTGTCACAATCATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAG |
Protein Sequence | MRSSSPSKAHSTQVPIKVQHRNAKKATRRRRVDLPCGCSYFIALGCHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQPEESVGNTPMFSNLPDLDSFTSSDLAFLKSI |
NCBI Accession | YP_003104750.1 |
---|---|
Location | 1514-2599 |
Gene Name | AC1 |
Protein Name | AC1 protein |
Coding Region | ATGCCTCCGCCCAAAAAATTTCTAATAAATGCCAAAAACTATTTCCTCACATACCCACATTGCTCACTAAGCAAAGAAGAAGCACTTTCCCAATTTTTAGCCCTAACGACACCAACCAATAAATTATTCATTCGAATCTGCAGGGAATTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATGGAGGTTTACGTTTCTCCTTTTTCTTCCTCTTCGTTTGATCGAGTTCCAGAAGAACTCGAAGAGTGGGCTGCAGAGAACGTTGTCAGTGCCGCTGCGCGGCCATTACGACCAATAAGTATAGTCATAGAGGGCGATAGTCGGACGGGGAAGACGATGTGGGCTCGATCATTGGGTCCACACAATTATCTGTGTGGTCATCTTGATTTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAACCCGTTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCCGGCCCCAATTCAAGCTATAAAGAATTCTTGGACGAAGAGAAAAACAGCGCACTCAAACACTGGGCAATAAAAAATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGA |
Protein Sequence | MPPPKKFLINAKNYFLTYPHCSLSKEEALSQFLALTTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKHWAIKNAIFVTLQSALYSGSYQGATPQRQESNEETES |
NCBI Accession | YP_003104751.1 |
---|---|
Location | 2149-2442 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAA |
Protein Sequence | MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQQTSKPTWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKLRPSIY |
1 |
Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production. Cai L, et al. aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep. PMID: 37970471 |
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2 |
Mei Y, et al. Stress Biol. 2023 Nov 23;3(1):51. doi: 10.1007/s44154-023-00128-8. PMID: 37994930 |
3 |
Liu Z, et al. Plant Dis. 2008 Jan;92(1):177. doi: 10.1094/PDIS-92-1-0177B. PMID: 30786379 |
4 |
Li P, et al. Arch Virol. 2018 Dec;163(12):3443-3446. doi: 10.1007/s00705-018-4004-6. Epub 2018 Aug 25. PMID: 30145682 |