Tomato leaf curl Hainan virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000885835.1
Isolate China:Hainan province
Release date 2015/2/22
Submitter Zhang,H., Hu,G., Zhou,X., Zhou,X.P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_013102
ACCGGATGGCCGCGATTTTTTTTAAAATGGTCCCCACCACTAACAAATGTGCTCCACTTAGAACGCTCCCTCAAATCCTATTTAATTCAAATCCATTATATATACTTGGTCCCCAAGTACTCACGTCAAACATGTGGGATCCTTTACTAAACGAGTTTCCCGAAACCGTACACGGTTTTAGGTGTATGTTAGCCATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCTGATACATTAGGGTACGATTTGATTCGTGATTTAATTTCAGTTATTCGTGCTAAGGACTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTATGAACAGCGTCATGATGTAGCGCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAACGGGTTGACTCATCGTGTGGGAAAGAGGTTTTGTGTTAAGTCTGTTTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCACACTAATACTGTGATGTTTTTTTTAGTTCGTGATAGGAGACCATTTGGGACTCCACAGGATTTTGGTCAGGTTTTTAATATGTATGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATAACAGAGATCGCTTTCAAGTTCTACGCCGTTTTCAGGCGACTGTTACTGATGGTCAGTATGCAAGTAAGGAGCAGGCGTTGGTTAGGAAATTTATGAAGGTTAACAACCATGTGACCTATAACCATCAAGAAGCCGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATATTTGAATGTGTTACATATTCTGTTTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAGGTCTGAGGACGTAAATGAGTCCAGATCTGGAAGATTAGAAAACATTGGTGTATTCCCAACGCTTTCCTCAGGTTGTAATTGAATTGGACTTGTATTGTGATGATGTCGTGGTTCATCAGAAATGGTCTCTCGTCGTGGCTGATTATCTTGAAATATAGGGGATTTTTGACCGTCCAGATATATACGCCACTCTCTGCTTGAGCTGCAGTGATAGCTTCCCCTGTGCGAGAATCCATGATTGTGACAGCCTAGTGCAATGAAGTATGAACAGCCACAAGGGAGATCAACTCTCCGTCTCCTCGTTGCTTTCTTGGCGTTGCGGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGCGCTTTGGAGGGTGACGAAGATCGCATTTTTTATTGCCCAGTGTTTGAGTGCGCTGTTTTTCTCTTCGTCCAAGAATTCTTTATAGCTTGAATTGGGGCCGGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAACGGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCGACTATCGCCCTCTATGACTATACTTATTGGTCGTAATGGCCGCGCAGCGGCACTGACAACGTTCTCTGCAGCCCACTCTTCGAGTTCTTCTGGAACTCGATCAAACGAAGAGGAAGAAAAAGGAGAAACGTAAACCTCCATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGCTTTGACGTCTGTTGAGCTTTTAGCGCTCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTTCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAATTCCCTGCAGATTCGAATGAATAATTTATTGGTTGGTGTCGTTAGGGCTAAAAATTGGGAAAGTGCTTCTTCTTTGCTTAGTGAGCAATGTGGGTATGTGAGGAAATAGTTTTTGGCATTTATTAGAAATTTTTTGGGCGGAGGCATGTTGACTTGGTCAATCGGGTCCTCTCAAACTTAGCTATGCAATCGGGGAATGGGTCCTTATTTATATGTGAGGACCTAAATGGCACAATTGTAAATTACCAAAAGAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_003104746.1
Location 186-482
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTTAGCCATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCTGATACATTAGGGTACGATTTGATTCGTGATTTAATTTCAGTTATTCGTGCTAAGGACTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGA
Protein Sequence MLAIKYLQLVENTYSPDTLGYDLIRDLISVIRAKDYVEASRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGQSAHVPKAQDVQDVQKP

NCBI Accession YP_003104747.1
Location 292-1065
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTATGAACAGCGTCATGATGTAGCGCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAACGGGTTGACTCATCGTGTGGGAAAGAGGTTTTGTGTTAAGTCTGTTTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCACACTAATACTGTGATGTTTTTTTTAGTTCGTGATAGGAGACCATTTGGGACTCCACAGGATTTTGGTCAGGTTTTTAATATGTATGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATAACAGAGATCGCTTTCAAGTTCTACGCCGTTTTCAGGCGACTGTTACTGATGGTCAGTATGCAAGTAAGGAGCAGGCGTTGGTTAGGAAATTTATGAAGGTTAACAACCATGTGACCTATAACCATCAAGAAGCCGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSWVNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTDGQYASKEQALVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_003104748.1
Location 1062-1466
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAAACAGAATATGTAACACATTCAAATATAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEAITAAQAESGVYIWTVKNPLYFKIISHDERPFLMNHDIITIQVQFNYNLRKALGIHQCFLIFQIWTHLRPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVTHSNIIKFNLY

NCBI Accession YP_003104749.1
Location 1207-1611
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGATCTCCCTTGTGGCTGTTCATACTTCATTGCACTAGGCTGTCACAATCATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAG
Protein Sequence MRSSSPSKAHSTQVPIKVQHRNAKKATRRRRVDLPCGCSYFIALGCHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQPEESVGNTPMFSNLPDLDSFTSSDLAFLKSI

NCBI Accession YP_003104750.1
Location 1514-2599
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGCCTCCGCCCAAAAAATTTCTAATAAATGCCAAAAACTATTTCCTCACATACCCACATTGCTCACTAAGCAAAGAAGAAGCACTTTCCCAATTTTTAGCCCTAACGACACCAACCAATAAATTATTCATTCGAATCTGCAGGGAATTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATGGAGGTTTACGTTTCTCCTTTTTCTTCCTCTTCGTTTGATCGAGTTCCAGAAGAACTCGAAGAGTGGGCTGCAGAGAACGTTGTCAGTGCCGCTGCGCGGCCATTACGACCAATAAGTATAGTCATAGAGGGCGATAGTCGGACGGGGAAGACGATGTGGGCTCGATCATTGGGTCCACACAATTATCTGTGTGGTCATCTTGATTTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAACCCGTTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCCGGCCCCAATTCAAGCTATAAAGAATTCTTGGACGAAGAGAAAAACAGCGCACTCAAACACTGGGCAATAAAAAATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGA
Protein Sequence MPPPKKFLINAKNYFLTYPHCSLSKEEALSQFLALTTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKHWAIKNAIFVTLQSALYSGSYQGATPQRQESNEETES

NCBI Accession YP_003104751.1
Location 2149-2442
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAA
Protein Sequence MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQQTSKPTWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production.

Cai L, et al.  aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep.

PMID: 37970471
2

Molecular characterization and pathogenicity of an infectious clone of tomato leaf curl New Delhi virus isolate infecting Cucumis melo.

Mei Y, et al.  Stress Biol. 2023 Nov 23;3(1):51. doi: 10.1007/s44154-023-00128-8.

PMID: 37994930
3

A plant virus manipulates both its host plant and the insect that facilitates its transmission.

Liang P, et al.  Sci Adv. 2025 Feb 28;11(9):eadr4563. doi: 10.1126/sciadv.adr4563. Epub 2025 Feb 28.

PMID: 40020061
4

First Report of Ageratum yellow vein virus Causing Tobacco Leaf Curl Disease in Fujian Province, China.

Liu Z, et al.  Plant Dis. 2008 Jan;92(1):177. doi: 10.1094/PDIS-92-1-0177B.

PMID: 30786379
5

Tomato leaf disease detection method based on improved YOLOv8n.

Chen M, et al.  Sci Rep. 2025 Jul 16;15(1):25837. doi: 10.1038/s41598-025-00405-8.

PMID: 40670395
6

Complete nucleotide sequence of a novel monopartite begomovirus infecting Ageratum conyzoides in China.

Li P, et al.  Arch Virol. 2018 Dec;163(12):3443-3446. doi: 10.1007/s00705-018-4004-6. Epub 2018 Aug 25.

PMID: 30145682